Wall clock time and date at job start Mon Mar 30 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48505 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99946 * 3 2 1 6 6 H 1.48495 * 109.47015 * 60.00377 * 3 2 1 7 7 C 1.37877 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.45907 * 180.02562 * 9 7 2 11 11 C 1.53188 * 109.31039 * 178.62363 * 10 9 7 12 12 N 1.46927 * 108.77680 * 54.63587 * 11 10 9 13 13 C 1.34772 * 120.63256 * 126.36269 * 12 11 10 14 14 O 1.21284 * 120.00075 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00210 * 180.02562 * 13 12 11 16 16 H 1.09005 * 110.81438 * 56.66664 * 15 13 12 17 17 C 1.54886 * 110.75908 * 180.02562 * 15 13 12 18 18 C 1.54264 * 104.19799 * 156.25724 * 17 15 13 19 19 H 1.09002 * 117.41204 * 116.36937 * 18 17 15 20 20 C 1.53002 * 118.19779 * 271.00250 * 18 17 15 21 21 C 1.53873 * 106.59802 * 336.39187 * 18 17 15 22 22 H 1.08998 * 121.33338 * 137.49992 * 21 18 17 23 23 C 1.54269 * 106.59751 * 359.97438 * 21 18 17 24 24 C 1.46925 * 118.73643 * 306.64373 * 12 11 10 25 25 C 1.52763 * 109.00859 * 53.30800 * 24 12 11 26 26 H 0.97004 * 120.00139 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.45839 * 299.96893 * 9 7 2 28 28 H 1.09006 * 109.49534 * 58.67644 * 10 9 7 29 29 H 1.08997 * 109.52577 * 298.59456 * 10 9 7 30 30 H 1.08995 * 109.59021 * 294.84983 * 11 10 9 31 31 H 1.08998 * 109.70378 * 174.48929 * 11 10 9 32 32 H 1.09008 * 110.48769 * 37.57890 * 17 15 13 33 33 H 1.08998 * 110.60327 * 274.99361 * 17 15 13 34 34 H 1.09004 * 117.45604 * 202.15086 * 20 18 17 35 35 H 1.08994 * 117.46305 * 346.94721 * 20 18 17 36 36 H 1.08993 * 110.48909 * 264.93126 * 23 21 18 37 37 H 1.09005 * 110.48469 * 142.28843 * 23 21 18 38 38 H 1.09008 * 109.58886 * 173.13987 * 24 12 11 39 39 H 1.08995 * 109.58832 * 293.56675 * 24 12 11 40 40 H 1.09003 * 109.56104 * 185.55280 * 25 24 12 41 41 H 1.08994 * 109.36216 * 65.50227 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9866 0.0342 12 7 0.5223 -5.0087 -1.0828 13 6 0.5122 -6.0344 -1.9570 14 8 1.2954 -6.9510 -1.8256 15 6 -0.4724 -6.0423 -3.0979 16 1 -0.3689 -5.1430 -3.7052 17 6 -0.2978 -7.3138 -3.9650 18 6 -1.6684 -7.4966 -4.6488 19 1 -1.7016 -7.4177 -5.7355 20 6 -2.7327 -8.3242 -3.9254 21 6 -2.7011 -6.7784 -3.7626 22 1 -3.4896 -6.1631 -4.1959 23 6 -1.9221 -6.1848 -2.5707 24 6 -0.4165 -3.8885 -1.2321 25 6 0.3702 -2.5790 -1.2494 26 1 -0.4850 0.8401 0.0004 27 1 0.6251 -2.5571 0.8901 28 1 2.8881 -3.5914 0.8773 29 1 2.8561 -3.6195 -0.9025 30 1 0.9370 -5.0712 0.9774 31 1 2.1735 -5.8189 -0.0641 32 1 -0.0667 -8.1747 -3.3375 33 1 0.4836 -7.1655 -4.7102 34 1 -3.5290 -8.7582 -4.5303 35 1 -2.4106 -8.9232 -3.0737 36 1 -1.9536 -6.8634 -1.7184 37 1 -2.3262 -5.2098 -2.2985 38 1 -0.9667 -3.9949 -2.1671 39 1 -1.1135 -3.8817 -0.3943 40 1 -0.3224 -1.7374 -1.2607 41 1 0.9977 -2.5462 -2.1400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597498243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:52 Heat of formation + Delta-G solvation = -23.909665 kcal Electronic energy + Delta-G solvation = -20492.977056 eV Core-core repulsion = 17565.692627 eV Total energy + Delta-G solvation = -2927.284429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36530 -38.53701 -36.72124 -33.56273 -32.21879 -30.85148 -29.99318 -28.24728 -26.34633 -24.14674 -22.62507 -22.15055 -20.90611 -19.79137 -19.44914 -18.19544 -16.97360 -16.34326 -16.07767 -15.46582 -14.74430 -14.55797 -13.90605 -13.41994 -13.19971 -13.13855 -13.00916 -12.75918 -12.51857 -12.19215 -11.64424 -11.57754 -11.39008 -11.25262 -11.09261 -11.03348 -10.96752 -10.62417 -10.38652 -10.12796 -10.07567 -9.79904 -9.63409 -9.28290 -9.18091 -8.91750 -8.40160 -7.99451 -6.05393 -4.11322 2.96617 3.25748 3.34411 3.38556 3.43868 3.54991 4.38289 4.39377 4.57992 4.73818 5.03401 5.08353 5.14606 5.24341 5.35822 5.41912 5.50624 5.61510 5.68982 5.69316 5.82113 5.91703 5.94963 6.05849 6.08402 6.11540 6.15036 6.15740 6.32987 6.35119 6.45793 6.65120 6.89136 7.02910 7.13810 7.26181 7.64676 7.89835 7.94640 8.02086 8.38311 8.58391 8.92356 9.54017 11.00199 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.004669 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.366165 B = 5995.839128 C = 6469.375271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.598 5.598 13 C 0.518 3.482 14 O -0.560 6.560 15 C -0.111 4.111 16 H 0.102 0.898 17 C -0.076 4.076 18 C -0.164 4.164 19 H 0.109 0.891 20 C -0.154 4.154 21 C -0.167 4.167 22 H 0.113 0.887 23 C -0.086 4.086 24 C 0.101 3.899 25 C -0.126 4.126 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 -11.348 -6.612 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.329 5.329 13 C 0.306 3.694 14 O -0.440 6.440 15 C -0.133 4.133 16 H 0.121 0.879 17 C -0.114 4.114 18 C -0.182 4.182 19 H 0.127 0.873 20 C -0.191 4.191 21 C -0.185 4.185 22 H 0.131 0.869 23 C -0.124 4.124 24 C -0.021 4.021 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.776 -11.672 -6.519 14.563 hybrid contribution 0.385 1.189 -0.079 1.252 sum -5.391 -10.483 -6.598 13.509 Atomic orbital electron populations 1.69842 1.05849 1.26354 1.51083 1.24953 0.94865 0.99051 0.95070 0.86566 0.80213 0.83844 0.77569 1.19832 1.21057 1.21034 1.21253 0.93000 0.90575 1.50104 0.92660 1.18639 0.92663 0.91751 0.93985 1.22003 0.98909 0.94250 1.00956 1.21691 0.91831 0.99661 0.87966 1.48231 1.35997 1.20930 1.27781 1.20394 0.84256 0.81748 0.82999 1.90623 1.41806 1.36482 1.75067 1.22439 0.94485 1.00766 0.95564 0.87948 1.21785 0.94775 0.97060 0.97804 1.23276 0.91498 1.05414 0.98012 0.87328 1.23426 1.00649 0.92542 1.02512 1.23599 1.01632 0.94001 0.99267 0.86915 1.22020 0.91990 1.01655 0.96722 1.22061 0.91777 0.87433 1.00811 1.21957 1.00138 0.94737 0.99574 0.93036 0.95455 0.92180 0.93003 0.92294 0.90419 0.90148 0.90990 0.88468 0.88971 0.91079 0.89900 0.91067 0.91992 0.87714 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.31 55.43 0.63 -23.59 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 10 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 11 C 0.11 2.05 6.44 -3.71 -0.02 2.02 16 12 N -0.60 -10.72 2.98 -173.03 -0.52 -11.23 16 13 C 0.52 9.05 7.06 -10.99 -0.08 8.97 16 14 O -0.56 -11.33 15.14 5.55 0.08 -11.25 16 15 C -0.11 -1.53 2.28 -89.77 -0.20 -1.74 16 16 H 0.10 1.36 7.55 -51.93 -0.39 0.97 16 17 C -0.08 -0.97 5.70 -25.07 -0.14 -1.11 16 18 C -0.16 -1.71 6.85 -89.50 -0.61 -2.33 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.15 -1.48 10.21 -25.42 -0.26 -1.74 16 21 C -0.17 -1.73 7.04 -88.19 -0.62 -2.35 16 22 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 23 C -0.09 -1.03 5.39 -25.06 -0.14 -1.17 16 24 C 0.10 1.77 5.56 -3.93 -0.02 1.75 16 25 C -0.13 -2.73 5.14 -26.84 -0.14 -2.87 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 32 H 0.08 1.14 7.44 -51.92 -0.39 0.75 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16 37 H 0.08 0.95 6.41 -51.93 -0.33 0.62 16 38 H 0.07 1.07 4.56 -51.92 -0.24 0.83 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -28.52 315.81 -9.66 -38.18 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.63 Total: 2.00 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.96 Total: -14.58 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.11 Total: -34.82 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.52 -9.66 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597498243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.270 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds