Wall clock time and date at job start Mon Mar 30 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99999 * 2 1 4 4 H 1.48505 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47129 * 299.99946 * 3 2 1 6 6 H 1.48495 * 109.47015 * 60.00377 * 3 2 1 7 7 C 1.37877 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.45907 * 180.02562 * 9 7 2 11 11 C 1.53188 * 109.31039 * 178.62363 * 10 9 7 12 12 N 1.46927 * 108.77680 * 54.63587 * 11 10 9 13 13 C 1.34772 * 120.63256 * 126.36269 * 12 11 10 14 14 O 1.21284 * 120.00075 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00210 * 180.02562 * 13 12 11 16 16 H 1.09005 * 110.81438 * 56.66664 * 15 13 12 17 17 C 1.54886 * 110.75908 * 180.02562 * 15 13 12 18 18 C 1.54264 * 104.19799 * 156.25724 * 17 15 13 19 19 H 1.09002 * 117.41204 * 116.36937 * 18 17 15 20 20 C 1.53002 * 118.19779 * 271.00250 * 18 17 15 21 21 C 1.53873 * 106.59802 * 336.39187 * 18 17 15 22 22 H 1.08998 * 121.33338 * 137.49992 * 21 18 17 23 23 C 1.54269 * 106.59751 * 359.97438 * 21 18 17 24 24 C 1.46925 * 118.73643 * 306.64373 * 12 11 10 25 25 C 1.52763 * 109.00859 * 53.30800 * 24 12 11 26 26 H 0.97004 * 120.00139 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.45839 * 299.96893 * 9 7 2 28 28 H 1.09006 * 109.49534 * 58.67644 * 10 9 7 29 29 H 1.08997 * 109.52577 * 298.59456 * 10 9 7 30 30 H 1.08995 * 109.59021 * 294.84983 * 11 10 9 31 31 H 1.08998 * 109.70378 * 174.48929 * 11 10 9 32 32 H 1.09008 * 110.48769 * 37.57890 * 17 15 13 33 33 H 1.08998 * 110.60327 * 274.99361 * 17 15 13 34 34 H 1.09004 * 117.45604 * 202.15086 * 20 18 17 35 35 H 1.08994 * 117.46305 * 346.94721 * 20 18 17 36 36 H 1.08993 * 110.48909 * 264.93126 * 23 21 18 37 37 H 1.09005 * 110.48469 * 142.28843 * 23 21 18 38 38 H 1.09008 * 109.58886 * 173.13987 * 24 12 11 39 39 H 1.08995 * 109.58832 * 293.56675 * 24 12 11 40 40 H 1.09003 * 109.56104 * 185.55280 * 25 24 12 41 41 H 1.08994 * 109.36216 * 65.50227 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4766 -4.9866 0.0342 12 7 0.5223 -5.0087 -1.0828 13 6 0.5122 -6.0344 -1.9570 14 8 1.2954 -6.9510 -1.8256 15 6 -0.4724 -6.0423 -3.0979 16 1 -0.3689 -5.1430 -3.7052 17 6 -0.2978 -7.3138 -3.9650 18 6 -1.6684 -7.4966 -4.6488 19 1 -1.7016 -7.4177 -5.7355 20 6 -2.7327 -8.3242 -3.9254 21 6 -2.7011 -6.7784 -3.7626 22 1 -3.4896 -6.1631 -4.1959 23 6 -1.9221 -6.1848 -2.5707 24 6 -0.4165 -3.8885 -1.2321 25 6 0.3702 -2.5790 -1.2494 26 1 -0.4850 0.8401 0.0004 27 1 0.6251 -2.5571 0.8901 28 1 2.8881 -3.5914 0.8773 29 1 2.8561 -3.6195 -0.9025 30 1 0.9370 -5.0712 0.9774 31 1 2.1735 -5.8189 -0.0641 32 1 -0.0667 -8.1747 -3.3375 33 1 0.4836 -7.1655 -4.7102 34 1 -3.5290 -8.7582 -4.5303 35 1 -2.4106 -8.9232 -3.0737 36 1 -1.9536 -6.8634 -1.7184 37 1 -2.3262 -5.2098 -2.2985 38 1 -0.9667 -3.9949 -2.1671 39 1 -1.1135 -3.8817 -0.3943 40 1 -0.3224 -1.7374 -1.2607 41 1 0.9977 -2.5462 -2.1400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597498243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:51 Heat of formation + Delta-G solvation = -37.911542 kcal Electronic energy + Delta-G solvation = -20493.584223 eV Core-core repulsion = 17565.692627 eV Total energy + Delta-G solvation = -2927.891596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61745 -39.68598 -38.29615 -35.35953 -33.59353 -32.41594 -31.52747 -29.19907 -28.12020 -25.57610 -24.16578 -23.62127 -21.95992 -21.03226 -20.57947 -19.65595 -18.58556 -17.90451 -17.18231 -16.91000 -16.48178 -16.06428 -15.20686 -14.93774 -14.66055 -14.45801 -14.30010 -14.23079 -13.85291 -13.66732 -13.26381 -13.03609 -12.81798 -12.55453 -12.44233 -12.24333 -12.18115 -12.09963 -11.99454 -11.89668 -11.48337 -11.01329 -11.00555 -10.82565 -10.69232 -10.48308 -10.38215 -9.55400 -8.08331 -6.21303 1.40128 1.43663 1.53430 1.59817 2.08043 2.44112 2.68851 3.18401 3.34708 3.69551 3.83054 3.90886 4.13256 4.18444 4.24914 4.28455 4.37156 4.46335 4.47167 4.52739 4.56635 4.65248 4.68950 4.76334 4.84872 4.94018 4.97379 5.04931 5.15205 5.17526 5.20342 5.25406 5.34665 5.42218 5.44375 5.55883 5.65504 5.98174 6.13058 6.39053 6.51422 6.87899 7.16755 7.46532 8.95390 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.004669 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.366165 B = 5995.839128 C = 6469.375271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.601 5.601 13 C 0.515 3.485 14 O -0.590 6.590 15 C -0.110 4.110 16 H 0.112 0.888 17 C -0.077 4.077 18 C -0.165 4.165 19 H 0.126 0.874 20 C -0.148 4.148 21 C -0.166 4.166 22 H 0.131 0.869 23 C -0.085 4.085 24 C 0.114 3.886 25 C -0.117 4.117 26 H 0.262 0.738 27 H 0.004 0.996 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 -11.645 -7.745 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.333 5.333 13 C 0.305 3.695 14 O -0.472 6.472 15 C -0.131 4.131 16 H 0.130 0.870 17 C -0.115 4.115 18 C -0.183 4.183 19 H 0.144 0.856 20 C -0.185 4.185 21 C -0.184 4.184 22 H 0.149 0.851 23 C -0.122 4.122 24 C -0.008 4.008 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.022 0.978 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.982 -11.972 -7.654 15.832 hybrid contribution 0.805 1.268 0.311 1.534 sum -6.177 -10.704 -7.343 14.376 Atomic orbital electron populations 1.69942 1.06750 1.27101 1.51234 1.25602 0.95690 1.01839 0.94792 0.85664 0.78968 0.80285 0.77664 1.19831 1.20517 1.20626 1.21566 0.92858 0.92306 1.50618 0.93630 1.18615 0.93051 0.91848 0.93852 1.21847 0.98336 0.94407 1.00525 1.21579 0.92060 0.98158 0.88942 1.48286 1.35915 1.21253 1.27811 1.21072 0.84293 0.80847 0.83289 1.90606 1.43189 1.37535 1.75844 1.22512 0.94521 1.01763 0.94292 0.86983 1.21753 0.96532 0.95710 0.97496 1.23266 0.89999 1.06205 0.98800 0.85579 1.23525 1.00669 0.92035 1.02275 1.23637 1.01789 0.94729 0.98225 0.85093 1.22004 0.90940 1.02080 0.97209 1.21936 0.91075 0.85083 1.02704 1.21734 0.99476 0.96353 0.97973 0.92867 0.97760 0.91889 0.94125 0.91223 0.90387 0.92095 0.90947 0.86212 0.89822 0.92068 0.89126 0.88006 0.91465 0.89979 0.95429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.66 11.31 21.45 0.24 -49.42 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.95 42.56 29.54 68.60 2.03 44.58 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -28.83 8.56 25.60 0.22 -28.61 16 8 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 9 C 0.04 2.15 2.07 -11.51 -0.02 2.13 16 10 C -0.11 -4.70 5.30 30.67 0.16 -4.53 16 11 C 0.12 4.23 6.44 86.36 0.56 4.79 16 12 N -0.60 -21.10 2.98 -819.74 -2.44 -23.55 16 13 C 0.52 17.59 7.06 87.66 0.62 18.21 16 14 O -0.59 -23.79 15.14 -3.04 -0.05 -23.84 16 15 C -0.11 -2.84 2.28 -10.24 -0.02 -2.87 16 16 H 0.11 2.72 7.55 -2.38 -0.02 2.70 16 17 C -0.08 -1.85 5.70 31.67 0.18 -1.67 16 18 C -0.16 -2.99 6.85 -10.07 -0.07 -3.06 16 19 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 20 C -0.15 -2.42 10.21 31.44 0.32 -2.09 16 21 C -0.17 -2.91 7.04 -9.22 -0.06 -2.98 16 22 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 23 C -0.08 -1.84 5.39 31.68 0.17 -1.67 16 24 C 0.11 3.86 5.56 86.22 0.48 4.34 16 25 C -0.12 -5.08 5.14 30.53 0.16 -4.93 16 26 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 27 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.88 7.00 -2.39 -0.02 2.86 16 32 H 0.06 1.70 7.44 -2.38 -0.02 1.68 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.46 8.04 -2.39 -0.02 1.44 16 37 H 0.09 1.82 6.41 -2.38 -0.02 1.80 16 38 H 0.10 2.83 4.56 -2.38 -0.01 2.82 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.08 3.99 6.03 -2.39 -0.01 3.97 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -61.13 315.81 3.92 -57.22 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.00 Total: 16.45 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.13 Total: -21.44 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -2.20 Total: -72.96 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.13 3.92 -57.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597498243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.304 kcal (2) G-P(sol) polarization free energy of solvation -61.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds