Wall clock time and date at job start Mon Mar 30 2020 06:20:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86803 * 119.99999 * 2 1
4 4 H 1.48505 * 109.46788 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47129 * 299.99946 * 3 2 1
6 6 H 1.48495 * 109.47015 * 60.00377 * 3 2 1
7 7 C 1.37877 * 119.99859 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00118 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00081 * 359.97438 * 7 2 1
10 10 C 1.53042 * 109.45907 * 180.02562 * 9 7 2
11 11 C 1.53188 * 109.31039 * 178.62363 * 10 9 7
12 12 N 1.46927 * 108.77680 * 54.63587 * 11 10 9
13 13 C 1.34772 * 120.63256 * 126.36269 * 12 11 10
14 14 O 1.21284 * 120.00075 * 0.02562 * 13 12 11
15 15 C 1.50704 * 120.00210 * 180.02562 * 13 12 11
16 16 H 1.09005 * 110.81438 * 56.66664 * 15 13 12
17 17 C 1.54886 * 110.75908 * 180.02562 * 15 13 12
18 18 C 1.54264 * 104.19799 * 156.25724 * 17 15 13
19 19 H 1.09002 * 117.41204 * 116.36937 * 18 17 15
20 20 C 1.53002 * 118.19779 * 271.00250 * 18 17 15
21 21 C 1.53873 * 106.59802 * 336.39187 * 18 17 15
22 22 H 1.08998 * 121.33338 * 137.49992 * 21 18 17
23 23 C 1.54269 * 106.59751 * 359.97438 * 21 18 17
24 24 C 1.46925 * 118.73643 * 306.64373 * 12 11 10
25 25 C 1.52763 * 109.00859 * 53.30800 * 24 12 11
26 26 H 0.97004 * 120.00139 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.45839 * 299.96893 * 9 7 2
28 28 H 1.09006 * 109.49534 * 58.67644 * 10 9 7
29 29 H 1.08997 * 109.52577 * 298.59456 * 10 9 7
30 30 H 1.08995 * 109.59021 * 294.84983 * 11 10 9
31 31 H 1.08998 * 109.70378 * 174.48929 * 11 10 9
32 32 H 1.09008 * 110.48769 * 37.57890 * 17 15 13
33 33 H 1.08998 * 110.60327 * 274.99361 * 17 15 13
34 34 H 1.09004 * 117.45604 * 202.15086 * 20 18 17
35 35 H 1.08994 * 117.46305 * 346.94721 * 20 18 17
36 36 H 1.08993 * 110.48909 * 264.93126 * 23 21 18
37 37 H 1.09005 * 110.48469 * 142.28843 * 23 21 18
38 38 H 1.09008 * 109.58886 * 173.13987 * 24 12 11
39 39 H 1.08995 * 109.58832 * 293.56675 * 24 12 11
40 40 H 1.09003 * 109.56104 * 185.55280 * 25 24 12
41 41 H 1.08994 * 109.36216 * 65.50227 * 25 24 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3965 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 6 2.2457 -3.6622 -0.0005
11 6 1.4766 -4.9866 0.0342
12 7 0.5223 -5.0087 -1.0828
13 6 0.5122 -6.0344 -1.9570
14 8 1.2954 -6.9510 -1.8256
15 6 -0.4724 -6.0423 -3.0979
16 1 -0.3689 -5.1430 -3.7052
17 6 -0.2978 -7.3138 -3.9650
18 6 -1.6684 -7.4966 -4.6488
19 1 -1.7016 -7.4177 -5.7355
20 6 -2.7327 -8.3242 -3.9254
21 6 -2.7011 -6.7784 -3.7626
22 1 -3.4896 -6.1631 -4.1959
23 6 -1.9221 -6.1848 -2.5707
24 6 -0.4165 -3.8885 -1.2321
25 6 0.3702 -2.5790 -1.2494
26 1 -0.4850 0.8401 0.0004
27 1 0.6251 -2.5571 0.8901
28 1 2.8881 -3.5914 0.8773
29 1 2.8561 -3.6195 -0.9025
30 1 0.9370 -5.0712 0.9774
31 1 2.1735 -5.8189 -0.0641
32 1 -0.0667 -8.1747 -3.3375
33 1 0.4836 -7.1655 -4.7102
34 1 -3.5290 -8.7582 -4.5303
35 1 -2.4106 -8.9232 -3.0737
36 1 -1.9536 -6.8634 -1.7184
37 1 -2.3262 -5.2098 -2.2985
38 1 -0.9667 -3.9949 -2.1671
39 1 -1.1135 -3.8817 -0.3943
40 1 -0.3224 -1.7374 -1.2607
41 1 0.9977 -2.5462 -2.1400
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597498243.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:20:51
Heat of formation + Delta-G solvation = -37.911542 kcal
Electronic energy + Delta-G solvation = -20493.584223 eV
Core-core repulsion = 17565.692627 eV
Total energy + Delta-G solvation = -2927.891596 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 263.163 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.61745 -39.68598 -38.29615 -35.35953 -33.59353 -32.41594 -31.52747 -29.19907
-28.12020 -25.57610 -24.16578 -23.62127 -21.95992 -21.03226 -20.57947 -19.65595
-18.58556 -17.90451 -17.18231 -16.91000 -16.48178 -16.06428 -15.20686 -14.93774
-14.66055 -14.45801 -14.30010 -14.23079 -13.85291 -13.66732 -13.26381 -13.03609
-12.81798 -12.55453 -12.44233 -12.24333 -12.18115 -12.09963 -11.99454 -11.89668
-11.48337 -11.01329 -11.00555 -10.82565 -10.69232 -10.48308 -10.38215 -9.55400
-8.08331 -6.21303 1.40128 1.43663 1.53430 1.59817 2.08043 2.44112
2.68851 3.18401 3.34708 3.69551 3.83054 3.90886 4.13256 4.18444
4.24914 4.28455 4.37156 4.46335 4.47167 4.52739 4.56635 4.65248
4.68950 4.76334 4.84872 4.94018 4.97379 5.04931 5.15205 5.17526
5.20342 5.25406 5.34665 5.42218 5.44375 5.55883 5.65504 5.98174
6.13058 6.39053 6.51422 6.87899 7.16755 7.46532 8.95390
Molecular weight = 263.16amu
Principal moments of inertia in cm(-1)
A = 0.032958 B = 0.004669 C = 0.004327
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.366165 B = 5995.839128 C = 6469.375271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.020 3.980
3 Si 0.948 3.052
4 H -0.274 1.274
5 H -0.279 1.279
6 H -0.280 1.280
7 C -0.535 4.535
8 H 0.045 0.955
9 C 0.045 3.955
10 C -0.113 4.113
11 C 0.115 3.885
12 N -0.601 5.601
13 C 0.515 3.485
14 O -0.590 6.590
15 C -0.110 4.110
16 H 0.112 0.888
17 C -0.077 4.077
18 C -0.165 4.165
19 H 0.126 0.874
20 C -0.148 4.148
21 C -0.166 4.166
22 H 0.131 0.869
23 C -0.085 4.085
24 C 0.114 3.886
25 C -0.117 4.117
26 H 0.262 0.738
27 H 0.004 0.996
28 H 0.062 0.938
29 H 0.040 0.960
30 H 0.070 0.930
31 H 0.078 0.922
32 H 0.060 0.940
33 H 0.072 0.928
34 H 0.120 0.880
35 H 0.083 0.917
36 H 0.061 0.939
37 H 0.090 0.910
38 H 0.102 0.898
39 H 0.067 0.933
40 H 0.082 0.918
41 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.253 -11.645 -7.745 15.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.179 4.179
3 Si 0.774 3.226
4 H -0.198 1.198
5 H -0.205 1.205
6 H -0.206 1.206
7 C -0.573 4.573
8 H 0.064 0.936
9 C 0.026 3.974
10 C -0.151 4.151
11 C -0.007 4.007
12 N -0.333 5.333
13 C 0.305 3.695
14 O -0.472 6.472
15 C -0.131 4.131
16 H 0.130 0.870
17 C -0.115 4.115
18 C -0.183 4.183
19 H 0.144 0.856
20 C -0.185 4.185
21 C -0.184 4.184
22 H 0.149 0.851
23 C -0.122 4.122
24 C -0.008 4.008
25 C -0.155 4.155
26 H 0.071 0.929
27 H 0.022 0.978
28 H 0.081 0.919
29 H 0.059 0.941
30 H 0.088 0.912
31 H 0.096 0.904
32 H 0.079 0.921
33 H 0.091 0.909
34 H 0.138 0.862
35 H 0.102 0.898
36 H 0.079 0.921
37 H 0.109 0.891
38 H 0.120 0.880
39 H 0.085 0.915
40 H 0.100 0.900
41 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -6.982 -11.972 -7.654 15.832
hybrid contribution 0.805 1.268 0.311 1.534
sum -6.177 -10.704 -7.343 14.376
Atomic orbital electron populations
1.69942 1.06750 1.27101 1.51234 1.25602 0.95690 1.01839 0.94792
0.85664 0.78968 0.80285 0.77664 1.19831 1.20517 1.20626 1.21566
0.92858 0.92306 1.50618 0.93630 1.18615 0.93051 0.91848 0.93852
1.21847 0.98336 0.94407 1.00525 1.21579 0.92060 0.98158 0.88942
1.48286 1.35915 1.21253 1.27811 1.21072 0.84293 0.80847 0.83289
1.90606 1.43189 1.37535 1.75844 1.22512 0.94521 1.01763 0.94292
0.86983 1.21753 0.96532 0.95710 0.97496 1.23266 0.89999 1.06205
0.98800 0.85579 1.23525 1.00669 0.92035 1.02275 1.23637 1.01789
0.94729 0.98225 0.85093 1.22004 0.90940 1.02080 0.97209 1.21936
0.91075 0.85083 1.02704 1.21734 0.99476 0.96353 0.97973 0.92867
0.97760 0.91889 0.94125 0.91223 0.90387 0.92095 0.90947 0.86212
0.89822 0.92068 0.89126 0.88006 0.91465 0.89979 0.95429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -49.66 11.31 21.45 0.24 -49.42 16
2 C 0.02 1.06 5.30 84.65 0.45 1.51 16
3 Si 0.95 42.56 29.54 68.60 2.03 44.58 16
4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
7 C -0.54 -28.83 8.56 25.60 0.22 -28.61 16
8 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16
9 C 0.04 2.15 2.07 -11.51 -0.02 2.13 16
10 C -0.11 -4.70 5.30 30.67 0.16 -4.53 16
11 C 0.12 4.23 6.44 86.36 0.56 4.79 16
12 N -0.60 -21.10 2.98 -819.74 -2.44 -23.55 16
13 C 0.52 17.59 7.06 87.66 0.62 18.21 16
14 O -0.59 -23.79 15.14 -3.04 -0.05 -23.84 16
15 C -0.11 -2.84 2.28 -10.24 -0.02 -2.87 16
16 H 0.11 2.72 7.55 -2.38 -0.02 2.70 16
17 C -0.08 -1.85 5.70 31.67 0.18 -1.67 16
18 C -0.16 -2.99 6.85 -10.07 -0.07 -3.06 16
19 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16
20 C -0.15 -2.42 10.21 31.44 0.32 -2.09 16
21 C -0.17 -2.91 7.04 -9.22 -0.06 -2.98 16
22 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16
23 C -0.08 -1.84 5.39 31.68 0.17 -1.67 16
24 C 0.11 3.86 5.56 86.22 0.48 4.34 16
25 C -0.12 -5.08 5.14 30.53 0.16 -4.93 16
26 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16
27 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16
28 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16
29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
31 H 0.08 2.88 7.00 -2.39 -0.02 2.86 16
32 H 0.06 1.70 7.44 -2.38 -0.02 1.68 16
33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
36 H 0.06 1.46 8.04 -2.39 -0.02 1.44 16
37 H 0.09 1.82 6.41 -2.38 -0.02 1.80 16
38 H 0.10 2.83 4.56 -2.38 -0.01 2.82 16
39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
40 H 0.08 3.99 6.03 -2.39 -0.01 3.97 16
41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -61.13 315.81 3.92 -57.22
By element:
Atomic # 1 Polarization: 15.45 SS G_CDS: 1.00 Total: 16.45 kcal
Atomic # 6 Polarization: -24.58 SS G_CDS: 3.13 Total: -21.44 kcal
Atomic # 7 Polarization: -70.77 SS G_CDS: -2.20 Total: -72.96 kcal
Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal
Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal
Total: -61.13 3.92 -57.22 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597498243.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.304 kcal
(2) G-P(sol) polarization free energy of solvation -61.131 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds