Wall clock time and date at job start Mon Mar 30 2020 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47114 * 119.99964 * 2 1 4 4 C 1.50694 * 120.00054 * 355.68605 * 3 2 1 5 5 C 1.32876 * 119.99787 * 175.68047 * 3 2 1 6 6 C 1.50700 * 119.99939 * 6.36122 * 5 3 2 7 7 C 1.50699 * 109.47267 * 125.99294 * 6 5 3 8 8 O 1.21282 * 119.99826 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00475 * 179.97438 * 7 6 5 10 10 C 1.46962 * 120.65140 * 359.82283 * 9 7 6 11 11 C 1.53196 * 108.88702 * 233.53270 * 10 9 7 12 12 C 1.53036 * 109.31067 * 305.44107 * 11 10 9 13 13 C 1.53035 * 109.53983 * 61.36742 * 12 11 10 14 14 H 1.09000 * 109.49807 * 58.58419 * 13 12 11 15 15 C 1.50705 * 109.52708 * 178.66494 * 13 12 11 16 16 H 1.07997 * 119.99580 * 25.25438 * 15 13 12 17 17 C 1.37875 * 120.00062 * 205.25933 * 15 13 12 18 18 N 1.31507 * 119.99990 * 185.15709 * 17 15 13 19 19 Si 1.86803 * 120.00178 * 5.15649 * 17 15 13 20 20 H 1.48499 * 109.47058 * 94.79965 * 19 17 15 21 21 H 1.48497 * 109.47205 * 214.80490 * 19 17 15 22 22 H 1.48501 * 109.47057 * 334.80250 * 19 17 15 23 23 C 1.46920 * 120.63379 * 180.02562 * 9 7 6 24 24 H 1.08001 * 119.99962 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.99672 * 359.97438 * 1 2 3 26 26 H 1.08009 * 119.99807 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47010 * 269.99609 * 4 3 2 28 28 H 1.08994 * 109.47589 * 29.99547 * 4 3 2 29 29 H 1.09004 * 109.46858 * 149.99911 * 4 3 2 30 30 H 1.07994 * 119.99893 * 186.36145 * 5 3 2 31 31 H 1.08999 * 109.47472 * 5.99679 * 6 5 3 32 32 H 1.09001 * 109.47292 * 245.99497 * 6 5 3 33 33 H 1.08993 * 109.46628 * 113.74874 * 10 9 7 34 34 H 1.09006 * 109.59640 * 353.39263 * 10 9 7 35 35 H 1.09007 * 109.49351 * 185.48959 * 11 10 9 36 36 H 1.08997 * 109.49971 * 65.39237 * 11 10 9 37 37 H 1.09000 * 109.46086 * 301.34458 * 12 11 10 38 38 H 1.09007 * 109.44815 * 181.38009 * 12 11 10 39 39 H 0.97004 * 120.00375 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.58708 * 6.60715 * 23 9 7 41 41 H 1.08998 * 109.58874 * 246.32106 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3140 2.5773 -0.0982 5 6 3.3902 1.2756 0.0867 6 6 4.1499 -0.0250 0.0405 7 6 5.1969 0.0428 -1.0413 8 8 5.3149 1.0486 -1.7087 9 7 6.0028 -1.0137 -1.2664 10 6 5.8757 -2.2377 -0.4630 11 6 7.2450 -2.5871 0.1284 12 6 8.2748 -2.6800 -0.9999 13 6 8.3846 -1.3263 -1.7053 14 1 8.6747 -0.5625 -0.9838 15 6 9.4223 -1.4089 -2.7950 16 1 9.6548 -2.3612 -3.2481 17 6 10.0750 -0.2687 -3.2133 18 7 10.9055 -0.3225 -4.2315 19 14 9.7795 1.3526 -2.3337 20 1 10.8274 1.5536 -1.3009 21 1 9.8322 2.4653 -3.3157 22 1 8.4438 1.3277 -1.6852 23 6 7.0285 -0.9623 -2.3171 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8687 -0.9354 -0.0004 27 1 1.2001 2.8528 -1.1466 28 1 0.3300 2.4652 0.3569 29 1 1.8694 3.3564 0.4241 30 1 3.9234 2.2090 0.1902 31 1 3.4599 -0.8415 -0.1726 32 1 4.6321 -0.1986 1.0025 33 1 5.5324 -3.0546 -1.0976 34 1 5.1606 -2.0732 0.3431 35 1 7.1842 -3.5449 0.6453 36 1 7.5458 -1.8115 0.8326 37 1 7.9606 -3.4386 -1.7167 38 1 9.2449 -2.9526 -0.5843 39 1 11.3644 0.4798 -4.5261 40 1 7.0742 0.0437 -2.7343 41 1 6.7807 -1.6737 -3.1048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:17 Heat of formation + Delta-G solvation = -13.528965 kcal Electronic energy + Delta-G solvation = -20038.723681 eV Core-core repulsion = 17111.889393 eV Total energy + Delta-G solvation = -2926.834288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77842 -37.40444 -36.56170 -33.43584 -32.11978 -31.79512 -30.59745 -29.82730 -26.12810 -25.17667 -23.96889 -21.96709 -21.87148 -19.78226 -18.50740 -17.62275 -17.03147 -16.66783 -15.78517 -15.58690 -14.93055 -14.29041 -14.13869 -13.85294 -13.63825 -13.38672 -12.92119 -12.85762 -12.62274 -12.52584 -12.37829 -12.23304 -11.91936 -11.63465 -11.26766 -11.05583 -10.70865 -10.60820 -10.57547 -10.54706 -10.08903 -9.67149 -9.58367 -9.27898 -9.09118 -8.56283 -8.28380 -8.02335 -6.11017 -4.11970 1.25774 2.89430 3.02571 3.32276 3.43379 3.52945 3.56990 4.44294 4.57406 4.75280 4.83524 4.94383 5.14932 5.21199 5.26002 5.35819 5.40196 5.44557 5.50975 5.52688 5.60323 5.64626 5.83566 5.92901 6.00019 6.14081 6.25789 6.29536 6.32835 6.43047 6.61506 6.63349 6.68117 6.80690 6.85454 6.93940 7.25529 7.39012 7.73563 7.93405 8.47329 8.63705 8.93979 9.52495 11.01296 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.005114 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.724508 B = 5473.509139 C = 6213.546979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.107 4.107 6 C -0.120 4.120 7 C 0.509 3.491 8 O -0.544 6.544 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.137 4.137 12 C -0.103 4.103 13 C 0.006 3.994 14 H 0.033 0.967 15 C -0.516 4.516 16 H 0.075 0.925 17 C 0.076 3.924 18 N -0.896 5.896 19 Si 0.867 3.133 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.252 1.252 23 C 0.112 3.888 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.265 0.735 40 H 0.081 0.919 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.767 -1.552 11.820 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.137 4.137 3 C -0.121 4.121 4 C -0.170 4.170 5 C -0.125 4.125 6 C -0.159 4.159 7 C 0.297 3.703 8 O -0.422 6.422 9 N -0.343 5.343 10 C -0.014 4.014 11 C -0.176 4.176 12 C -0.141 4.141 13 C -0.014 4.014 14 H 0.051 0.949 15 C -0.554 4.554 16 H 0.093 0.907 17 C -0.127 4.127 18 N -0.533 5.533 19 Si 0.694 3.306 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.176 1.176 23 C -0.009 4.009 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.572 -0.911 11.323 20.924 hybrid contribution 0.071 0.784 0.341 0.857 sum -17.501 -0.128 11.664 21.032 Atomic orbital electron populations 1.24390 0.95702 1.01900 1.00804 1.21993 0.95328 0.96414 0.99956 1.20510 0.93981 0.94351 1.03227 1.20762 0.99774 0.94188 1.02230 1.22883 0.93708 0.97998 0.97960 1.20906 0.97538 0.98186 0.99306 1.20430 0.82012 0.83174 0.84713 1.90682 1.70719 1.30882 1.49898 1.48518 1.35248 1.14128 1.36430 1.21697 0.97981 0.87224 0.94546 1.22002 0.95524 1.00871 0.99172 1.21520 0.97295 0.99426 0.95866 1.19462 0.92376 0.93496 0.96051 0.94894 1.20914 1.19398 0.96076 1.18993 0.90695 1.25045 0.94493 0.98797 0.94335 1.69906 1.28660 1.29397 1.25302 0.86991 0.79802 0.83737 0.80102 1.20553 1.21308 1.17611 1.22469 0.87121 1.02696 0.88636 0.88269 0.88135 0.86566 0.91335 0.91915 0.91731 0.86282 0.88300 0.88200 0.91632 0.90829 0.91699 0.92108 0.92723 0.92206 0.92559 0.90059 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 14.13 28.88 0.41 -1.25 16 2 C -0.12 -1.22 9.30 -37.83 -0.35 -1.57 16 3 C -0.12 -1.40 5.98 -102.87 -0.62 -2.01 16 4 C -0.11 -1.11 9.59 36.00 0.35 -0.76 16 5 C -0.11 -1.41 8.43 -36.16 -0.30 -1.71 16 6 C -0.12 -1.54 4.29 -29.04 -0.12 -1.67 16 7 C 0.51 9.27 7.69 -10.99 -0.08 9.18 16 8 O -0.54 -12.31 15.45 5.56 0.09 -12.23 16 9 N -0.61 -11.03 2.98 -172.77 -0.51 -11.54 16 10 C 0.11 1.47 6.34 -3.69 -0.02 1.45 16 11 C -0.14 -1.97 6.08 -26.61 -0.16 -2.13 16 12 C -0.10 -1.92 5.15 -26.69 -0.14 -2.06 16 13 C 0.01 0.13 1.78 -91.67 -0.16 -0.03 16 14 H 0.03 0.80 5.70 -51.93 -0.30 0.50 16 15 C -0.52 -14.20 8.87 -34.44 -0.31 -14.50 16 16 H 0.07 2.21 8.05 -52.49 -0.42 1.79 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 18 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 19 Si 0.87 22.31 26.44 -169.99 -4.49 17.82 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.25 -6.52 5.80 56.52 0.33 -6.19 16 23 C 0.11 2.46 5.41 -3.73 -0.02 2.44 16 24 H 0.10 0.71 8.06 -52.49 -0.42 0.28 16 25 H 0.10 0.80 6.08 -52.49 -0.32 0.48 16 26 H 0.12 1.08 5.84 -52.48 -0.31 0.77 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.51 6.29 -51.93 -0.33 0.18 16 29 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 30 H 0.12 1.65 8.04 -52.49 -0.42 1.23 16 31 H 0.10 1.06 5.14 -51.93 -0.27 0.79 16 32 H 0.10 1.08 7.68 -51.93 -0.40 0.68 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.75 5.94 -51.93 -0.31 0.45 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 2.04 5.55 -51.93 -0.29 1.75 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -32.84 323.09 -7.28 -40.12 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.36 Total: 0.11 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.64 Total: -12.52 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.26 Total: -38.17 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.49 Total: 17.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.84 -7.28 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.595 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds