Wall clock time and date at job start Mon Mar 30 2020 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47114 * 119.99964 * 2 1 4 4 C 1.50694 * 120.00054 * 355.68605 * 3 2 1 5 5 C 1.32876 * 119.99787 * 175.68047 * 3 2 1 6 6 C 1.50700 * 119.99939 * 6.36122 * 5 3 2 7 7 C 1.50699 * 109.47267 * 125.99294 * 6 5 3 8 8 O 1.21282 * 119.99826 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00475 * 179.97438 * 7 6 5 10 10 C 1.46962 * 120.65140 * 359.82283 * 9 7 6 11 11 C 1.53196 * 108.88702 * 233.53270 * 10 9 7 12 12 C 1.53036 * 109.31067 * 305.44107 * 11 10 9 13 13 C 1.53035 * 109.53983 * 61.36742 * 12 11 10 14 14 H 1.09000 * 109.49807 * 58.58419 * 13 12 11 15 15 C 1.50705 * 109.52708 * 178.66494 * 13 12 11 16 16 H 1.07997 * 119.99580 * 25.25438 * 15 13 12 17 17 C 1.37875 * 120.00062 * 205.25933 * 15 13 12 18 18 N 1.31507 * 119.99990 * 185.15709 * 17 15 13 19 19 Si 1.86803 * 120.00178 * 5.15649 * 17 15 13 20 20 H 1.48499 * 109.47058 * 94.79965 * 19 17 15 21 21 H 1.48497 * 109.47205 * 214.80490 * 19 17 15 22 22 H 1.48501 * 109.47057 * 334.80250 * 19 17 15 23 23 C 1.46920 * 120.63379 * 180.02562 * 9 7 6 24 24 H 1.08001 * 119.99962 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.99672 * 359.97438 * 1 2 3 26 26 H 1.08009 * 119.99807 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47010 * 269.99609 * 4 3 2 28 28 H 1.08994 * 109.47589 * 29.99547 * 4 3 2 29 29 H 1.09004 * 109.46858 * 149.99911 * 4 3 2 30 30 H 1.07994 * 119.99893 * 186.36145 * 5 3 2 31 31 H 1.08999 * 109.47472 * 5.99679 * 6 5 3 32 32 H 1.09001 * 109.47292 * 245.99497 * 6 5 3 33 33 H 1.08993 * 109.46628 * 113.74874 * 10 9 7 34 34 H 1.09006 * 109.59640 * 353.39263 * 10 9 7 35 35 H 1.09007 * 109.49351 * 185.48959 * 11 10 9 36 36 H 1.08997 * 109.49971 * 65.39237 * 11 10 9 37 37 H 1.09000 * 109.46086 * 301.34458 * 12 11 10 38 38 H 1.09007 * 109.44815 * 181.38009 * 12 11 10 39 39 H 0.97004 * 120.00375 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.58708 * 6.60715 * 23 9 7 41 41 H 1.08998 * 109.58874 * 246.32106 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3140 2.5773 -0.0982 5 6 3.3902 1.2756 0.0867 6 6 4.1499 -0.0250 0.0405 7 6 5.1969 0.0428 -1.0413 8 8 5.3149 1.0486 -1.7087 9 7 6.0028 -1.0137 -1.2664 10 6 5.8757 -2.2377 -0.4630 11 6 7.2450 -2.5871 0.1284 12 6 8.2748 -2.6800 -0.9999 13 6 8.3846 -1.3263 -1.7053 14 1 8.6747 -0.5625 -0.9838 15 6 9.4223 -1.4089 -2.7950 16 1 9.6548 -2.3612 -3.2481 17 6 10.0750 -0.2687 -3.2133 18 7 10.9055 -0.3225 -4.2315 19 14 9.7795 1.3526 -2.3337 20 1 10.8274 1.5536 -1.3009 21 1 9.8322 2.4653 -3.3157 22 1 8.4438 1.3277 -1.6852 23 6 7.0285 -0.9623 -2.3171 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8687 -0.9354 -0.0004 27 1 1.2001 2.8528 -1.1466 28 1 0.3300 2.4652 0.3569 29 1 1.8694 3.3564 0.4241 30 1 3.9234 2.2090 0.1902 31 1 3.4599 -0.8415 -0.1726 32 1 4.6321 -0.1986 1.0025 33 1 5.5324 -3.0546 -1.0976 34 1 5.1606 -2.0732 0.3431 35 1 7.1842 -3.5449 0.6453 36 1 7.5458 -1.8115 0.8326 37 1 7.9606 -3.4386 -1.7167 38 1 9.2449 -2.9526 -0.5843 39 1 11.3644 0.4798 -4.5261 40 1 7.0742 0.0437 -2.7343 41 1 6.7807 -1.6737 -3.1048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597905780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:17 Heat of formation + Delta-G solvation = -33.999780 kcal Electronic energy + Delta-G solvation = -20039.611362 eV Core-core repulsion = 17111.889393 eV Total energy + Delta-G solvation = -2927.721969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17252 -38.66482 -37.68186 -35.29600 -33.69986 -32.88645 -32.08002 -30.78287 -27.47865 -26.77464 -25.30058 -23.38903 -22.74109 -21.36262 -19.92511 -18.97359 -18.45294 -18.13555 -16.86346 -16.80420 -16.51926 -15.83288 -15.41269 -15.18375 -15.08932 -14.72028 -14.36761 -14.19975 -14.02264 -13.70690 -13.44783 -13.27343 -13.07914 -12.94959 -12.76947 -12.57684 -12.42223 -12.02740 -11.74939 -11.59413 -11.50680 -11.33899 -11.27101 -11.07588 -10.75310 -10.68218 -9.53393 -9.11301 -8.37798 -6.39647 0.44822 1.21976 1.30306 1.42795 1.66959 2.00984 2.26584 2.31259 3.01397 3.67041 3.74119 3.99354 4.02368 4.16464 4.18568 4.22819 4.41285 4.50953 4.54498 4.60791 4.68285 4.69221 4.78331 4.79089 4.81715 4.94647 4.98476 5.01726 5.14499 5.15630 5.26109 5.43801 5.50398 5.59387 5.60111 5.62747 5.74952 5.82795 6.05022 6.27498 6.57718 6.69858 7.25264 7.27299 8.78558 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.005114 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.724508 B = 5473.509139 C = 6213.546979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C -0.107 4.107 4 C -0.119 4.119 5 C -0.145 4.145 6 C -0.102 4.102 7 C 0.499 3.501 8 O -0.600 6.600 9 N -0.613 5.613 10 C 0.102 3.898 11 C -0.129 4.129 12 C -0.102 4.102 13 C 0.005 3.995 14 H 0.021 0.979 15 C -0.512 4.512 16 H 0.044 0.956 17 C 0.025 3.975 18 N -0.941 5.941 19 Si 0.926 3.074 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.258 1.258 23 C 0.122 3.878 24 H 0.119 0.881 25 H 0.107 0.893 26 H 0.129 0.871 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.266 0.734 40 H 0.042 0.958 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.827 -2.866 14.623 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.107 4.107 4 C -0.175 4.175 5 C -0.164 4.164 6 C -0.141 4.141 7 C 0.290 3.710 8 O -0.482 6.482 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.015 4.015 14 H 0.039 0.961 15 C -0.550 4.550 16 H 0.063 0.937 17 C -0.174 4.174 18 N -0.581 5.581 19 Si 0.752 3.248 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.182 1.182 23 C -0.001 4.001 24 H 0.137 0.863 25 H 0.125 0.875 26 H 0.146 0.854 27 H 0.083 0.917 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.647 -2.263 14.172 25.145 hybrid contribution 0.889 1.129 -0.575 1.548 sum -19.757 -1.134 13.597 24.010 Atomic orbital electron populations 1.24691 0.95290 1.03240 0.97376 1.22096 0.96015 0.96031 1.02420 1.20826 0.93732 0.95782 1.00352 1.20851 1.00742 0.93694 1.02213 1.22779 0.94405 0.97563 1.01638 1.20870 0.96141 0.99014 0.98029 1.21495 0.82424 0.81999 0.85118 1.90652 1.72326 1.33056 1.52124 1.48558 1.34023 1.16019 1.35890 1.22114 0.98678 0.85575 0.95549 1.21967 0.94177 1.03203 0.97365 1.21444 0.98976 0.96286 0.97262 1.19420 0.91421 0.96055 0.94572 0.96091 1.21273 1.19913 0.94492 1.19354 0.93738 1.25732 0.94723 1.01863 0.95043 1.70020 1.30574 1.30299 1.27227 0.86054 0.79476 0.80134 0.79126 1.19058 1.21826 1.18245 1.21873 0.88286 1.00145 0.89824 0.86283 0.87514 0.85387 0.91690 0.89878 0.91662 0.88386 0.85408 0.85553 0.89883 0.86270 0.87452 0.92268 0.92580 0.92798 0.92492 0.93986 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 14.13 66.64 0.94 -1.28 16 2 C -0.15 -2.48 9.30 23.43 0.22 -2.26 16 3 C -0.11 -2.26 5.98 -18.71 -0.11 -2.37 16 4 C -0.12 -2.13 9.59 71.23 0.68 -1.44 16 5 C -0.15 -3.64 8.43 24.51 0.21 -3.44 16 6 C -0.10 -2.32 4.29 29.10 0.12 -2.19 16 7 C 0.50 17.65 7.69 87.66 0.67 18.32 16 8 O -0.60 -27.83 15.45 -3.04 -0.05 -27.88 16 9 N -0.61 -21.15 2.98 -818.90 -2.44 -23.59 16 10 C 0.10 2.31 6.34 86.36 0.55 2.85 16 11 C -0.13 -3.17 6.08 30.67 0.19 -2.99 16 12 C -0.10 -3.63 5.15 30.62 0.16 -3.48 16 13 C 0.01 0.23 1.78 -11.47 -0.02 0.21 16 14 H 0.02 1.02 5.70 -2.39 -0.01 1.00 16 15 C -0.51 -29.16 8.87 25.60 0.23 -28.94 16 16 H 0.04 2.74 8.05 -2.91 -0.02 2.72 16 17 C 0.02 1.47 5.47 84.66 0.46 1.94 16 18 N -0.94 -59.83 13.96 21.45 0.30 -59.53 16 19 Si 0.93 48.01 26.44 68.60 1.81 49.83 16 20 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 22 H -0.26 -13.54 5.80 99.48 0.58 -12.97 16 23 C 0.12 5.44 5.41 86.35 0.47 5.91 16 24 H 0.12 1.12 8.06 -2.91 -0.02 1.09 16 25 H 0.11 1.25 6.08 -2.91 -0.02 1.24 16 26 H 0.13 1.78 5.84 -2.91 -0.02 1.77 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.12 6.29 -2.39 -0.02 1.10 16 29 H 0.06 1.15 8.06 -2.38 -0.02 1.13 16 30 H 0.10 2.80 8.04 -2.91 -0.02 2.77 16 31 H 0.13 2.15 5.14 -2.39 -0.01 2.14 16 32 H 0.13 2.18 7.68 -2.39 -0.02 2.16 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.69 5.94 -2.38 -0.01 1.67 16 35 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.04 2.19 5.55 -2.39 -0.01 2.18 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -76.72 323.09 5.26 -71.46 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.87 Total: 8.87 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 4.77 Total: -19.15 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.14 Total: -83.12 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.81 Total: 49.83 kcal Total: -76.72 5.26 -71.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.457 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds