Wall clock time and date at job start Mon Mar 30 2020 07:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47118 * 119.99723 * 2 1 4 4 C 1.50692 * 120.00406 * 0.02562 * 3 2 1 5 5 C 1.32875 * 119.99723 * 179.97438 * 3 2 1 6 6 C 1.50697 * 119.99956 * 174.08596 * 5 3 2 7 7 C 1.50700 * 109.47192 * 234.28184 * 6 5 3 8 8 O 1.21278 * 119.99857 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99799 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63375 * 359.71580 * 9 7 6 11 11 C 1.52763 * 109.01057 * 233.58646 * 10 9 7 12 12 C 1.53041 * 109.38681 * 305.58952 * 11 10 9 13 13 C 1.53043 * 109.53572 * 61.23610 * 12 11 10 14 14 H 1.08998 * 109.49900 * 58.58920 * 13 12 11 15 15 C 1.50709 * 109.52210 * 178.67221 * 13 12 11 16 16 H 1.07997 * 119.99653 * 359.85569 * 15 13 12 17 17 C 1.37871 * 119.99728 * 179.85796 * 15 13 12 18 18 N 1.31518 * 120.00138 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99838 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46951 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47388 * 119.99481 * 19 17 15 22 22 H 1.48499 * 109.47080 * 240.00008 * 19 17 15 23 23 C 1.46930 * 120.62822 * 179.97438 * 9 7 6 24 24 H 1.08002 * 119.99934 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99705 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99705 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47086 * 265.16076 * 4 3 2 28 28 H 1.09006 * 109.47076 * 25.15711 * 4 3 2 29 29 H 1.09000 * 109.47250 * 145.15934 * 4 3 2 30 30 H 1.08003 * 119.99901 * 354.09465 * 5 3 2 31 31 H 1.09004 * 109.46855 * 114.28433 * 6 5 3 32 32 H 1.09004 * 109.47040 * 354.28355 * 6 5 3 33 33 H 1.09000 * 109.58488 * 353.42429 * 10 9 7 34 34 H 1.09003 * 109.58629 * 113.84839 * 10 9 7 35 35 H 1.08997 * 109.56682 * 185.54769 * 11 10 9 36 36 H 1.09004 * 109.35819 * 65.49521 * 11 10 9 37 37 H 1.08998 * 109.45357 * 301.22132 * 12 11 10 38 38 H 1.08988 * 109.45303 * 181.25002 * 12 11 10 39 39 H 0.97003 * 119.99750 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.58643 * 246.15031 * 23 9 7 41 41 H 1.08996 * 109.58839 * 6.43855 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1466 2.5722 -0.1340 7 6 5.1165 2.4733 -1.2831 8 8 5.1884 1.4497 -1.9295 9 7 5.9040 3.5224 -1.5923 10 6 5.8239 4.7712 -0.8224 11 6 5.5922 5.9350 -1.7846 12 6 6.6800 5.9285 -2.8610 13 6 6.6073 4.6217 -3.6543 14 1 5.6203 4.5252 -4.1066 15 6 7.6574 4.6296 -4.7352 16 1 8.3104 5.4824 -4.8474 17 6 7.7844 3.5480 -5.5807 18 7 6.9895 2.5092 -5.4437 19 14 9.0865 3.5574 -6.9200 20 1 9.8457 4.8324 -6.8634 21 1 10.0162 2.4178 -6.7147 22 1 8.4325 3.4298 -8.2471 23 6 6.8549 3.4409 -2.7094 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.2039 2.9374 -1.0233 28 1 0.3237 2.4286 0.4378 29 1 1.8599 3.3154 0.5876 30 1 3.9330 0.3438 0.0972 31 1 4.6939 2.7717 0.7874 32 1 3.4427 3.3832 -0.3213 33 1 4.9959 4.7125 -0.1160 34 1 6.7576 4.9279 -0.2821 35 1 5.6295 6.8757 -1.2353 36 1 4.6148 5.8261 -2.2546 37 1 7.6587 6.0124 -2.3886 38 1 6.5287 6.7714 -3.5351 39 1 7.0786 1.7485 -6.0389 40 1 7.8741 3.4871 -2.3258 41 1 6.7086 2.5037 -3.2462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597905781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:20 Heat of formation + Delta-G solvation = -16.377346 kcal Electronic energy + Delta-G solvation = -20038.119366 eV Core-core repulsion = 17111.161563 eV Total energy + Delta-G solvation = -2926.957803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49145 -37.18625 -36.33903 -33.41982 -32.33354 -31.69874 -29.87953 -28.64437 -26.69638 -25.02109 -24.19333 -21.82764 -21.10028 -19.57422 -18.14873 -17.76672 -16.83105 -16.21370 -15.78700 -15.09545 -14.60957 -14.45060 -13.97043 -13.68556 -13.58054 -13.20518 -12.95442 -12.67125 -12.51408 -12.32042 -11.97680 -11.86748 -11.53316 -11.32844 -11.00696 -10.94954 -10.75792 -10.49363 -10.45264 -10.35332 -10.22988 -9.88300 -9.24642 -9.10445 -8.86012 -8.42552 -8.11355 -7.70615 -5.98506 -4.07631 1.40695 3.05645 3.30038 3.32594 3.38947 3.41896 3.84272 4.43764 4.74439 4.90189 5.06785 5.23157 5.27695 5.31627 5.37319 5.46412 5.49956 5.53627 5.65411 5.68641 5.73378 5.87193 6.00445 6.02993 6.17283 6.31449 6.39444 6.52325 6.60480 6.68264 6.75037 6.86645 6.98143 7.00291 7.17724 7.32455 7.66213 7.88907 8.01819 8.29974 8.40462 8.92320 8.98623 9.58184 11.06687 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.004778 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.181588 B = 5858.740020 C = 6606.053667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.119 4.119 7 C 0.508 3.492 8 O -0.535 6.535 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.039 3.961 14 H 0.028 0.972 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.112 3.888 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.263 0.737 40 H 0.040 0.960 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 1.852 13.431 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.177 4.177 5 C -0.122 4.122 6 C -0.159 4.159 7 C 0.295 3.705 8 O -0.412 6.412 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.020 3.980 14 H 0.046 0.954 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.008 4.008 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.798 1.126 12.996 15.734 hybrid contribution 0.751 -0.007 -0.769 1.075 sum -8.047 1.119 12.227 14.680 Atomic orbital electron populations 1.24336 0.95692 1.01771 1.01768 1.21866 0.95260 0.96144 0.99151 1.20491 0.93900 0.94253 1.03641 1.20861 0.99879 0.94612 1.02320 1.22867 0.93838 0.98056 0.97485 1.20876 0.98504 0.97872 0.98637 1.20298 0.81250 0.83801 0.85138 1.90710 1.68351 1.29665 1.52514 1.48521 1.39730 1.12240 1.33669 1.21548 1.00980 0.85134 0.93842 1.21880 1.00733 0.96663 0.98023 1.21619 0.96421 1.00466 0.96301 1.18981 0.97896 0.88785 0.92308 0.95389 1.21120 1.17811 1.02826 1.14214 0.92336 1.25058 0.95946 0.95612 0.97434 1.69908 1.37456 1.06376 1.38010 0.86544 0.81692 0.77969 0.81857 1.19787 1.20969 1.21008 1.22270 0.88247 1.05569 0.84684 0.88393 0.88168 0.86907 0.91392 0.91735 0.91504 0.86504 0.88541 0.88447 0.91175 0.92092 0.92203 0.92206 0.93197 0.93054 0.92715 0.94137 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 14.11 28.88 0.41 -1.63 16 2 C -0.11 -1.28 9.83 -37.83 -0.37 -1.65 16 3 C -0.12 -1.60 5.98 -102.87 -0.62 -2.21 16 4 C -0.12 -1.30 8.54 36.00 0.31 -0.99 16 5 C -0.10 -1.49 8.45 -36.16 -0.31 -1.80 16 6 C -0.12 -1.68 4.12 -29.04 -0.12 -1.80 16 7 C 0.51 10.13 7.69 -10.99 -0.08 10.05 16 8 O -0.54 -13.23 15.45 5.56 0.09 -13.15 16 9 N -0.61 -12.12 2.98 -173.00 -0.52 -12.64 16 10 C 0.11 1.64 6.31 -3.93 -0.02 1.62 16 11 C -0.13 -2.12 6.06 -26.83 -0.16 -2.28 16 12 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 13 C 0.04 0.98 2.25 -91.62 -0.21 0.77 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.52 -14.20 8.57 -34.44 -0.29 -14.50 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.88 -25.98 11.39 55.43 0.63 -25.35 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.11 2.75 5.40 -3.68 -0.02 2.73 16 24 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 25 H 0.10 0.94 6.06 -52.49 -0.32 0.62 16 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.59 6.20 -51.93 -0.32 0.27 16 29 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 30 H 0.12 1.74 8.05 -52.48 -0.42 1.32 16 31 H 0.10 1.11 7.95 -51.93 -0.41 0.69 16 32 H 0.10 1.22 5.33 -51.93 -0.28 0.94 16 33 H 0.07 0.82 5.93 -51.93 -0.31 0.52 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 1.00 8.14 -51.94 -0.42 0.58 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.12 3.50 5.13 -51.93 -0.27 3.24 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -31.80 327.07 -8.06 -39.86 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.44 Total: 2.37 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.72 Total: -12.38 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.12 Total: -37.99 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.80 -8.06 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.481 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds