Wall clock time and date at job start Mon Mar 30 2020 07:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47118 * 119.99723 * 2 1 4 4 C 1.50692 * 120.00406 * 0.02562 * 3 2 1 5 5 C 1.32875 * 119.99723 * 179.97438 * 3 2 1 6 6 C 1.50697 * 119.99956 * 174.08596 * 5 3 2 7 7 C 1.50700 * 109.47192 * 234.28184 * 6 5 3 8 8 O 1.21278 * 119.99857 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99799 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63375 * 359.71580 * 9 7 6 11 11 C 1.52763 * 109.01057 * 233.58646 * 10 9 7 12 12 C 1.53041 * 109.38681 * 305.58952 * 11 10 9 13 13 C 1.53043 * 109.53572 * 61.23610 * 12 11 10 14 14 H 1.08998 * 109.49900 * 58.58920 * 13 12 11 15 15 C 1.50709 * 109.52210 * 178.67221 * 13 12 11 16 16 H 1.07997 * 119.99653 * 359.85569 * 15 13 12 17 17 C 1.37871 * 119.99728 * 179.85796 * 15 13 12 18 18 N 1.31518 * 120.00138 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99838 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46951 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47388 * 119.99481 * 19 17 15 22 22 H 1.48499 * 109.47080 * 240.00008 * 19 17 15 23 23 C 1.46930 * 120.62822 * 179.97438 * 9 7 6 24 24 H 1.08002 * 119.99934 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99705 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99705 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47086 * 265.16076 * 4 3 2 28 28 H 1.09006 * 109.47076 * 25.15711 * 4 3 2 29 29 H 1.09000 * 109.47250 * 145.15934 * 4 3 2 30 30 H 1.08003 * 119.99901 * 354.09465 * 5 3 2 31 31 H 1.09004 * 109.46855 * 114.28433 * 6 5 3 32 32 H 1.09004 * 109.47040 * 354.28355 * 6 5 3 33 33 H 1.09000 * 109.58488 * 353.42429 * 10 9 7 34 34 H 1.09003 * 109.58629 * 113.84839 * 10 9 7 35 35 H 1.08997 * 109.56682 * 185.54769 * 11 10 9 36 36 H 1.09004 * 109.35819 * 65.49521 * 11 10 9 37 37 H 1.08998 * 109.45357 * 301.22132 * 12 11 10 38 38 H 1.08988 * 109.45303 * 181.25002 * 12 11 10 39 39 H 0.97003 * 119.99750 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.58643 * 246.15031 * 23 9 7 41 41 H 1.08996 * 109.58839 * 6.43855 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 0.0006 5 6 3.3930 1.2741 0.0005 6 6 4.1466 2.5722 -0.1340 7 6 5.1165 2.4733 -1.2831 8 8 5.1884 1.4497 -1.9295 9 7 5.9040 3.5224 -1.5923 10 6 5.8239 4.7712 -0.8224 11 6 5.5922 5.9350 -1.7846 12 6 6.6800 5.9285 -2.8610 13 6 6.6073 4.6217 -3.6543 14 1 5.6203 4.5252 -4.1066 15 6 7.6574 4.6296 -4.7352 16 1 8.3104 5.4824 -4.8474 17 6 7.7844 3.5480 -5.5807 18 7 6.9895 2.5092 -5.4437 19 14 9.0865 3.5574 -6.9200 20 1 9.8457 4.8324 -6.8634 21 1 10.0162 2.4178 -6.7147 22 1 8.4325 3.4298 -8.2471 23 6 6.8549 3.4409 -2.7094 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.2039 2.9374 -1.0233 28 1 0.3237 2.4286 0.4378 29 1 1.8599 3.3154 0.5876 30 1 3.9330 0.3438 0.0972 31 1 4.6939 2.7717 0.7874 32 1 3.4427 3.3832 -0.3213 33 1 4.9959 4.7125 -0.1160 34 1 6.7576 4.9279 -0.2821 35 1 5.6295 6.8757 -1.2353 36 1 4.6148 5.8261 -2.2546 37 1 7.6587 6.0124 -2.3886 38 1 6.5287 6.7714 -3.5351 39 1 7.0786 1.7485 -6.0389 40 1 7.8741 3.4871 -2.3258 41 1 6.7086 2.5037 -3.2462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597905781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:19 Heat of formation + Delta-G solvation = -35.223270 kcal Electronic energy + Delta-G solvation = -20038.936587 eV Core-core repulsion = 17111.161563 eV Total energy + Delta-G solvation = -2927.775024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02984 -38.55471 -37.61786 -35.31737 -33.64262 -33.15671 -31.57119 -29.71722 -27.81686 -26.87590 -25.71911 -23.42893 -22.27630 -21.09732 -19.62077 -18.78633 -18.55080 -17.84338 -17.09734 -16.61769 -16.45275 -15.87754 -15.19598 -15.06887 -14.89555 -14.52495 -14.36458 -14.06654 -14.03866 -13.55585 -13.48382 -13.19896 -12.92456 -12.66693 -12.51460 -12.31151 -12.25617 -12.20140 -11.83876 -11.65596 -11.61885 -11.37716 -11.09880 -10.94052 -10.61145 -10.50227 -9.37378 -9.09210 -8.12204 -6.29752 0.44565 1.38174 1.39572 1.51824 1.79269 2.06660 2.37115 2.44999 3.16246 3.74477 3.80384 4.01346 4.09545 4.21344 4.33873 4.36436 4.44267 4.45866 4.56099 4.62666 4.77082 4.81564 4.84481 4.90331 4.91929 5.00495 5.11870 5.14220 5.27239 5.30840 5.37824 5.49606 5.55218 5.60411 5.67476 5.80337 5.90371 6.00554 6.06204 6.32842 6.73796 6.84276 7.38802 7.42777 8.91206 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.004778 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.181588 B = 5858.740020 C = 6606.053667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.146 4.146 3 C -0.110 4.110 4 C -0.123 4.123 5 C -0.142 4.142 6 C -0.098 4.098 7 C 0.496 3.504 8 O -0.598 6.598 9 N -0.613 5.613 10 C 0.101 3.899 11 C -0.128 4.128 12 C -0.106 4.106 13 C 0.038 3.962 14 H -0.016 1.016 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.008 3.992 18 N -0.917 5.917 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.124 3.876 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.259 0.741 40 H 0.033 0.967 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 4.099 15.531 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.110 4.110 4 C -0.180 4.180 5 C -0.161 4.161 6 C -0.137 4.137 7 C 0.286 3.714 8 O -0.480 6.480 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.144 4.144 13 C 0.019 3.981 14 H 0.003 0.997 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.556 5.556 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.002 3.998 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.969 3.427 15.132 18.442 hybrid contribution 0.996 -0.743 -1.422 1.888 sum -8.973 2.684 13.710 16.604 Atomic orbital electron populations 1.24645 0.94957 1.03328 0.97840 1.21985 0.96239 0.95945 1.02202 1.20846 0.93672 0.95730 1.00777 1.20965 1.00937 0.93602 1.02458 1.22771 0.94549 0.97648 1.01101 1.20807 0.97416 0.98501 0.97003 1.21460 0.81404 0.82637 0.85924 1.90676 1.70176 1.32137 1.54962 1.48576 1.38690 1.14402 1.32788 1.21973 1.03951 0.82236 0.93851 1.21856 0.98402 0.99196 0.97104 1.21516 0.98631 0.97093 0.97121 1.18916 0.94700 0.91933 0.92590 0.99741 1.21584 1.18179 1.02687 1.14974 0.91966 1.25918 0.98021 0.95246 0.99914 1.70117 1.39481 1.07029 1.38975 0.85503 0.79033 0.78365 0.78768 1.18272 1.20895 1.20829 1.21650 0.89047 1.03034 0.86094 0.86667 0.86744 0.87526 0.92005 0.89802 0.89497 0.88592 0.85086 0.85959 0.86566 0.90206 0.87535 0.93005 0.92527 0.93097 0.93232 0.94860 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 14.11 66.64 0.94 -2.15 16 2 C -0.15 -3.40 9.83 23.43 0.23 -3.17 16 3 C -0.11 -2.73 5.98 -18.71 -0.11 -2.84 16 4 C -0.12 -2.28 8.54 71.23 0.61 -1.67 16 5 C -0.14 -4.07 8.45 24.51 0.21 -3.86 16 6 C -0.10 -2.59 4.12 29.10 0.12 -2.47 16 7 C 0.50 20.08 7.69 87.66 0.67 20.75 16 8 O -0.60 -31.51 15.45 -3.02 -0.05 -31.56 16 9 N -0.61 -24.35 2.98 -819.64 -2.44 -26.79 16 10 C 0.10 2.70 6.31 86.22 0.54 3.25 16 11 C -0.13 -3.59 6.06 30.53 0.19 -3.40 16 12 C -0.11 -4.06 5.11 30.62 0.16 -3.90 16 13 C 0.04 1.94 2.25 -11.44 -0.03 1.91 16 14 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 15 C -0.54 -30.02 8.57 25.60 0.22 -29.80 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 17 C 0.01 0.47 5.30 84.65 0.45 0.91 16 18 N -0.92 -57.22 11.39 21.45 0.24 -56.98 16 19 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 C 0.12 6.34 5.40 86.38 0.47 6.80 16 24 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 25 H 0.11 1.73 6.06 -2.91 -0.02 1.71 16 26 H 0.11 2.53 8.06 -2.91 -0.02 2.51 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.21 6.20 -2.38 -0.01 1.20 16 29 H 0.09 1.26 6.70 -2.39 -0.02 1.24 16 30 H 0.10 3.06 8.05 -2.91 -0.02 3.04 16 31 H 0.13 2.51 7.95 -2.38 -0.02 2.49 16 32 H 0.12 2.60 5.33 -2.39 -0.01 2.58 16 33 H 0.12 2.08 5.93 -2.39 -0.01 2.07 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 40 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 4.46 5.13 -2.39 -0.01 4.45 16 Total: -1.00 -76.51 327.07 5.44 -71.07 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.00 Total: 16.84 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.66 Total: -19.64 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.20 Total: -83.77 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.05 Total: -31.56 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -76.51 5.44 -71.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597905781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.846 kcal (2) G-P(sol) polarization free energy of solvation -76.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds