Wall clock time and date at job start Mon Mar 30 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.29448 * 117.96043 * 2 1 4 4 C 1.50062 * 124.07412 * 179.53106 * 3 2 1 5 5 C 1.53026 * 110.14884 * 17.13045 * 4 3 2 6 6 C 1.53000 * 109.64311 * 190.66654 * 5 4 3 7 7 C 1.50701 * 109.63912 * 70.24973 * 5 4 3 8 8 O 1.21283 * 119.99983 * 7.16970 * 7 5 4 9 9 N 1.34771 * 119.99956 * 187.16241 * 7 5 4 10 10 C 1.47583 * 134.49228 * 175.06772 * 9 7 5 11 11 C 1.53950 * 86.11700 * 155.36620 * 10 9 7 12 12 C 1.50700 * 113.74428 * 137.95531 * 11 10 9 13 13 H 1.08005 * 119.99375 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00327 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99767 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00070 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47015 * 180.02562 * 16 14 12 18 18 H 1.48493 * 109.47595 * 60.00090 * 16 14 12 19 19 H 1.48504 * 109.47257 * 299.99802 * 16 14 12 20 20 C 1.47579 * 134.49502 * 355.07588 * 9 7 5 21 21 C 1.53383 * 108.61405 * 310.46063 * 5 4 3 22 22 C 1.50062 * 117.96347 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47325 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47287 * 119.99906 * 1 2 3 25 25 H 1.09003 * 109.47403 * 239.99944 * 1 2 3 26 26 H 1.08000 * 117.96196 * 359.51129 * 3 2 1 27 27 H 1.09002 * 109.35941 * 256.92653 * 4 3 2 28 28 H 1.09000 * 109.36201 * 137.34193 * 4 3 2 29 29 H 1.09004 * 109.47295 * 304.43563 * 6 5 4 30 30 H 1.08996 * 109.47023 * 64.43603 * 6 5 4 31 31 H 1.09002 * 109.47113 * 184.43997 * 6 5 4 32 32 H 1.09000 * 113.77097 * 41.06732 * 10 9 7 33 33 H 1.08999 * 113.87609 * 269.67828 * 10 9 7 34 34 H 1.08998 * 113.73944 * 269.15809 * 11 10 9 35 35 H 0.97004 * 120.00164 * 0.02562 * 15 14 12 36 36 H 1.09001 * 113.77267 * 90.33426 * 20 9 7 37 37 H 1.08999 * 113.76976 * 318.93612 * 20 9 7 38 38 H 1.09007 * 109.64235 * 187.22154 * 21 5 4 39 39 H 1.09000 * 109.64692 * 307.84992 * 21 5 4 40 40 H 1.09002 * 109.36080 * 317.33432 * 22 2 1 41 41 H 1.08996 * 109.36140 * 77.06152 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6059 1.3032 0.0102 5 6 4.2793 -0.0073 -0.4031 6 6 5.7832 0.0807 -0.1362 7 6 4.0389 -0.2599 -1.8692 8 8 3.5057 0.5893 -2.5514 9 7 4.4167 -1.4294 -2.4223 10 6 4.2626 -2.0397 -3.7572 11 6 5.5174 -2.8618 -3.4108 12 6 5.4280 -4.3084 -3.8236 13 1 4.5386 -4.6761 -4.3137 14 6 6.4816 -5.1625 -3.5756 15 7 7.5648 -4.7145 -2.9792 16 14 6.3711 -6.9553 -4.0879 17 1 7.6249 -7.6562 -3.7106 18 1 6.1799 -7.0393 -5.5581 19 1 5.2206 -7.5963 -3.4017 20 6 5.1503 -2.6141 -1.9364 21 6 3.6750 -1.1499 0.4228 22 6 2.2106 -1.3254 0.0006 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 -0.3634 -0.5138 0.8900 26 1 1.5088 2.0379 -0.0081 27 1 3.9332 1.5768 1.0133 28 1 3.8897 2.0910 -0.6877 29 1 6.1933 0.9500 -0.6504 30 1 5.9570 0.1771 0.9355 31 1 6.2709 -0.8222 -0.5037 32 1 4.4093 -1.3399 -4.5798 33 1 3.3599 -2.6408 -3.8659 34 1 6.4502 -2.3891 -3.7179 35 1 7.6223 -3.7834 -2.7134 36 1 4.5080 -3.3837 -1.5084 37 1 6.0057 -2.3729 -1.3053 38 1 4.2289 -2.0699 0.2357 39 1 3.7211 -0.9001 1.4828 40 1 1.7121 -1.9989 0.6978 41 1 2.1767 -1.7530 -1.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598026047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:34 Heat of formation + Delta-G solvation = -10.239025 kcal Electronic energy + Delta-G solvation = -20925.042891 eV Core-core repulsion = 17998.351266 eV Total energy + Delta-G solvation = -2926.691626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50342 -38.19321 -36.56006 -33.95220 -32.84639 -30.78788 -29.11819 -28.39150 -25.34957 -24.91932 -24.55349 -23.14044 -22.23154 -20.10248 -18.65037 -17.26396 -16.88704 -15.86084 -15.49475 -14.93389 -14.77488 -14.35721 -14.06295 -13.82140 -13.40613 -13.21388 -12.97272 -12.51663 -12.39904 -12.35965 -12.11005 -11.85735 -11.75854 -11.61537 -11.52054 -11.28364 -11.09647 -10.95609 -10.68127 -10.28930 -10.19459 -10.06598 -9.59150 -9.22715 -8.61305 -8.56846 -8.49223 -7.87905 -6.51572 -4.24586 2.42819 3.20298 3.37740 3.38620 3.54939 3.57565 4.43283 4.63718 4.72497 4.78432 5.08927 5.17546 5.22681 5.33197 5.42385 5.49867 5.62629 5.63797 5.75385 5.77950 5.83110 5.86500 5.95043 5.97243 5.99894 6.08549 6.10653 6.16191 6.22535 6.28055 6.29623 6.31577 6.45427 6.55794 6.69445 6.81491 7.17418 7.29519 7.99256 8.27090 8.47342 8.68663 8.79294 9.48095 10.87723 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.005381 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.473218 B = 5202.421120 C = 5440.320149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 C -0.141 4.141 4 C -0.065 4.065 5 C -0.075 4.075 6 C -0.144 4.144 7 C 0.541 3.459 8 O -0.559 6.559 9 N -0.638 5.638 10 C 0.111 3.889 11 C 0.013 3.987 12 C -0.595 4.595 13 H 0.055 0.945 14 C 0.025 3.975 15 N -0.903 5.903 16 Si 1.068 2.932 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.287 1.287 20 C 0.097 3.903 21 C -0.108 4.108 22 C -0.085 4.085 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 7.022 8.564 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.159 4.159 4 C -0.102 4.102 5 C -0.078 4.078 6 C -0.202 4.202 7 C 0.331 3.669 8 O -0.438 6.438 9 N -0.371 5.371 10 C -0.011 4.011 11 C -0.006 4.006 12 C -0.633 4.633 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.538 5.538 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.026 4.026 21 C -0.145 4.145 22 C -0.122 4.122 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.101 6.223 8.291 12.565 hybrid contribution -0.980 1.491 0.016 1.784 sum -8.080 7.714 8.307 13.921 Atomic orbital electron populations 1.20895 0.92847 1.01868 1.01634 1.20758 0.95527 0.94945 1.02067 1.21769 0.95845 0.96885 1.01449 1.20298 0.92576 0.96299 1.01013 1.20811 0.97089 0.97161 0.92776 1.21900 0.93155 1.03125 1.01979 1.19995 0.77231 0.81136 0.88587 1.90612 1.44733 1.44835 1.63620 1.50306 1.55785 1.15414 1.15641 1.23296 1.00292 0.93387 0.84122 1.20641 0.93202 0.96324 0.90434 1.21816 1.04805 0.93201 1.43511 0.92641 1.25858 0.92241 1.05799 0.94130 1.70820 1.28228 1.18077 1.36655 0.83544 0.76058 0.74505 0.76313 1.20728 1.21314 1.21326 1.23876 0.93595 0.83571 1.01550 1.21777 0.95540 0.98050 0.99148 1.20438 0.94731 0.94948 1.02095 0.92419 0.92031 0.92130 0.88193 0.90696 0.90250 0.92242 0.91722 0.91232 0.92232 0.90864 0.92894 0.91978 0.90520 0.92048 0.90410 0.91075 0.91042 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.98 36.00 0.36 -1.01 16 2 C -0.13 -1.89 5.65 -100.95 -0.57 -2.46 16 3 C -0.14 -2.02 8.70 -35.90 -0.31 -2.34 16 4 C -0.06 -0.91 4.55 -28.18 -0.13 -1.04 16 5 C -0.08 -1.16 0.55 -155.45 -0.09 -1.25 16 6 C -0.14 -2.02 8.43 37.16 0.31 -1.70 16 7 C 0.54 10.57 4.97 -10.99 -0.05 10.51 16 8 O -0.56 -12.60 16.07 5.56 0.09 -12.51 16 9 N -0.64 -12.80 3.38 -178.41 -0.60 -13.40 16 10 C 0.11 2.35 8.39 -2.97 -0.02 2.33 16 11 C 0.01 0.31 3.09 -90.85 -0.28 0.02 16 12 C -0.60 -15.25 8.77 -34.44 -0.30 -15.55 16 13 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 14 C 0.03 0.66 5.46 -17.82 -0.10 0.57 16 15 N -0.90 -25.11 13.65 55.43 0.76 -24.35 16 16 Si 1.07 23.39 29.90 -169.99 -5.08 18.31 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.10 1.96 5.88 -2.98 -0.02 1.94 16 21 C -0.11 -1.51 4.67 -26.32 -0.12 -1.64 16 22 C -0.09 -1.23 5.30 -27.98 -0.15 -1.38 16 23 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.30 7.56 -52.49 -0.40 0.90 16 27 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 28 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.06 5.53 -51.93 -0.29 0.77 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.52 8.09 -51.93 -0.42 1.09 16 34 H 0.05 1.32 7.61 -51.93 -0.40 0.92 16 35 H 0.27 7.40 7.04 -40.82 -0.29 7.11 16 36 H 0.08 1.56 7.87 -51.93 -0.41 1.16 16 37 H 0.06 1.20 6.02 -51.93 -0.31 0.89 16 38 H 0.08 1.14 6.10 -51.93 -0.32 0.82 16 39 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.24 7.29 -51.93 -0.38 0.86 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -29.18 319.95 -8.07 -37.25 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.58 Total: 2.88 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.47 Total: -13.00 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.15 Total: -37.76 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.08 Total: 18.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.18 -8.07 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.010 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds