Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.29448 * 117.96043 * 2 1 4 4 C 1.50062 * 124.07412 * 179.53106 * 3 2 1 5 5 C 1.53026 * 110.14884 * 17.13045 * 4 3 2 6 6 C 1.53000 * 109.64311 * 190.66654 * 5 4 3 7 7 C 1.50701 * 109.63912 * 70.24973 * 5 4 3 8 8 O 1.21283 * 119.99983 * 7.16970 * 7 5 4 9 9 N 1.34771 * 119.99956 * 187.16241 * 7 5 4 10 10 C 1.47583 * 134.49228 * 175.06772 * 9 7 5 11 11 C 1.53950 * 86.11700 * 155.36620 * 10 9 7 12 12 C 1.50700 * 113.74428 * 137.95531 * 11 10 9 13 13 H 1.08005 * 119.99375 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00327 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99767 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00070 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47015 * 180.02562 * 16 14 12 18 18 H 1.48493 * 109.47595 * 60.00090 * 16 14 12 19 19 H 1.48504 * 109.47257 * 299.99802 * 16 14 12 20 20 C 1.47579 * 134.49502 * 355.07588 * 9 7 5 21 21 C 1.53383 * 108.61405 * 310.46063 * 5 4 3 22 22 C 1.50062 * 117.96347 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47325 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47287 * 119.99906 * 1 2 3 25 25 H 1.09003 * 109.47403 * 239.99944 * 1 2 3 26 26 H 1.08000 * 117.96196 * 359.51129 * 3 2 1 27 27 H 1.09002 * 109.35941 * 256.92653 * 4 3 2 28 28 H 1.09000 * 109.36201 * 137.34193 * 4 3 2 29 29 H 1.09004 * 109.47295 * 304.43563 * 6 5 4 30 30 H 1.08996 * 109.47023 * 64.43603 * 6 5 4 31 31 H 1.09002 * 109.47113 * 184.43997 * 6 5 4 32 32 H 1.09000 * 113.77097 * 41.06732 * 10 9 7 33 33 H 1.08999 * 113.87609 * 269.67828 * 10 9 7 34 34 H 1.08998 * 113.73944 * 269.15809 * 11 10 9 35 35 H 0.97004 * 120.00164 * 0.02562 * 15 14 12 36 36 H 1.09001 * 113.77267 * 90.33426 * 20 9 7 37 37 H 1.08999 * 113.76976 * 318.93612 * 20 9 7 38 38 H 1.09007 * 109.64235 * 187.22154 * 21 5 4 39 39 H 1.09000 * 109.64692 * 307.84992 * 21 5 4 40 40 H 1.09002 * 109.36080 * 317.33432 * 22 2 1 41 41 H 1.08996 * 109.36140 * 77.06152 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6059 1.3032 0.0102 5 6 4.2793 -0.0073 -0.4031 6 6 5.7832 0.0807 -0.1362 7 6 4.0389 -0.2599 -1.8692 8 8 3.5057 0.5893 -2.5514 9 7 4.4167 -1.4294 -2.4223 10 6 4.2626 -2.0397 -3.7572 11 6 5.5174 -2.8618 -3.4108 12 6 5.4280 -4.3084 -3.8236 13 1 4.5386 -4.6761 -4.3137 14 6 6.4816 -5.1625 -3.5756 15 7 7.5648 -4.7145 -2.9792 16 14 6.3711 -6.9553 -4.0879 17 1 7.6249 -7.6562 -3.7106 18 1 6.1799 -7.0393 -5.5581 19 1 5.2206 -7.5963 -3.4017 20 6 5.1503 -2.6141 -1.9364 21 6 3.6750 -1.1499 0.4228 22 6 2.2106 -1.3254 0.0006 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 -0.3634 -0.5138 0.8900 26 1 1.5088 2.0379 -0.0081 27 1 3.9332 1.5768 1.0133 28 1 3.8897 2.0910 -0.6877 29 1 6.1933 0.9500 -0.6504 30 1 5.9570 0.1771 0.9355 31 1 6.2709 -0.8222 -0.5037 32 1 4.4093 -1.3399 -4.5798 33 1 3.3599 -2.6408 -3.8659 34 1 6.4502 -2.3891 -3.7179 35 1 7.6223 -3.7834 -2.7134 36 1 4.5080 -3.3837 -1.5084 37 1 6.0057 -2.3729 -1.3053 38 1 4.2289 -2.0699 0.2357 39 1 3.7211 -0.9001 1.4828 40 1 1.7121 -1.9989 0.6978 41 1 2.1767 -1.7530 -1.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598026047.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = -25.621793 kcal Electronic energy + Delta-G solvation = -20925.709938 eV Core-core repulsion = 17998.351266 eV Total energy + Delta-G solvation = -2927.358672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.93425 -39.70971 -38.10511 -35.16592 -34.75736 -31.93596 -30.61139 -29.65421 -27.05918 -26.73180 -25.70235 -24.25455 -23.75274 -21.74064 -20.06238 -19.02810 -18.43965 -17.44635 -16.87232 -16.38775 -16.14949 -15.67511 -15.58870 -15.20063 -14.84930 -14.59271 -14.14197 -13.89394 -13.75151 -13.62457 -13.44505 -13.27280 -13.19101 -13.01842 -12.79023 -12.74346 -12.54562 -12.42855 -12.25264 -11.90179 -11.46882 -11.40704 -11.13767 -10.93180 -10.54234 -10.35268 -9.66103 -9.54742 -8.60069 -6.33293 1.35574 1.61487 1.65087 1.67035 1.86470 1.96369 2.61794 3.18563 3.36231 3.52471 3.67107 3.96499 4.00176 4.11072 4.24028 4.26136 4.33954 4.41207 4.46397 4.49357 4.58726 4.62024 4.68864 4.70714 4.75501 4.78611 4.80489 4.86497 4.90491 4.97157 5.03374 5.11406 5.17228 5.20511 5.25278 5.39452 5.74616 6.01715 6.10930 6.19828 6.59732 6.87491 7.18161 7.46051 8.80233 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.005381 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.473218 B = 5202.421120 C = 5440.320149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.145 4.145 3 C -0.153 4.153 4 C -0.064 4.064 5 C -0.073 4.073 6 C -0.142 4.142 7 C 0.537 3.463 8 O -0.592 6.592 9 N -0.637 5.637 10 C 0.113 3.887 11 C 0.001 3.999 12 C -0.604 4.604 13 H 0.053 0.947 14 C -0.018 4.018 15 N -0.928 5.928 16 Si 1.112 2.888 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.118 3.882 21 C -0.105 4.105 22 C -0.086 4.086 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 6.893 10.323 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.145 4.145 3 C -0.171 4.171 4 C -0.101 4.101 5 C -0.076 4.076 6 C -0.199 4.199 7 C 0.329 3.671 8 O -0.474 6.474 9 N -0.370 5.370 10 C -0.010 4.010 11 C -0.018 4.018 12 C -0.642 4.642 13 H 0.071 0.929 14 C -0.218 4.218 15 N -0.564 5.564 16 Si 0.934 3.066 17 H -0.212 1.212 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.004 4.004 21 C -0.142 4.142 22 C -0.123 4.123 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.913 6.109 10.056 14.180 hybrid contribution -0.757 1.600 -0.586 1.865 sum -8.670 7.710 9.470 14.976 Atomic orbital electron populations 1.20912 0.91411 1.02680 1.02103 1.20985 0.96815 0.94687 1.02009 1.21972 0.96136 0.97451 1.01579 1.20343 0.92554 0.94843 1.02325 1.20894 0.98435 0.98664 0.89571 1.21908 0.91684 1.02153 1.04138 1.20850 0.76014 0.79961 0.90323 1.90589 1.46195 1.45637 1.64960 1.50276 1.55984 1.15769 1.14996 1.23176 0.99528 0.93269 0.84989 1.20593 0.92958 0.95445 0.92818 1.22089 1.04645 0.94331 1.43101 0.92858 1.27099 0.91786 1.09306 0.93648 1.70924 1.29270 1.17691 1.38531 0.82973 0.76349 0.70502 0.76766 1.21224 1.20125 1.19439 1.23553 0.93715 0.83588 0.99537 1.21804 0.94918 0.97017 1.00457 1.20449 0.95463 0.95556 1.00851 0.91498 0.92851 0.90293 0.87158 0.87466 0.91745 0.92535 0.88333 0.92858 0.92595 0.90392 0.95268 0.92984 0.90349 0.91158 0.91217 0.88150 0.89066 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.98 71.23 0.71 -1.78 16 2 C -0.14 -3.84 5.65 -15.10 -0.09 -3.93 16 3 C -0.15 -4.08 8.70 27.03 0.24 -3.85 16 4 C -0.06 -1.66 4.55 29.66 0.13 -1.52 16 5 C -0.07 -2.12 0.55 -52.79 -0.03 -2.15 16 6 C -0.14 -3.67 8.43 71.98 0.61 -3.06 16 7 C 0.54 20.84 4.97 87.66 0.44 21.28 16 8 O -0.59 -26.89 16.07 -3.04 -0.05 -26.93 16 9 N -0.64 -25.72 3.38 -836.76 -2.83 -28.55 16 10 C 0.11 4.87 8.39 86.48 0.73 5.60 16 11 C 0.00 0.05 3.09 -10.88 -0.03 0.02 16 12 C -0.60 -31.11 8.77 25.60 0.22 -30.89 16 13 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 14 C -0.02 -0.97 5.46 84.65 0.46 -0.50 16 15 N -0.93 -52.05 13.65 21.45 0.29 -51.76 16 16 Si 1.11 46.53 29.90 68.60 2.05 48.59 16 17 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 20 C 0.12 4.81 5.88 86.48 0.51 5.32 16 21 C -0.10 -2.69 4.67 30.86 0.14 -2.55 16 22 C -0.09 -2.35 5.30 29.79 0.16 -2.19 16 23 H 0.07 1.31 7.56 -2.39 -0.02 1.29 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.11 2.65 7.56 -2.91 -0.02 2.63 16 27 H 0.11 2.09 8.11 -2.39 -0.02 2.07 16 28 H 0.06 1.88 7.66 -2.39 -0.02 1.86 16 29 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.55 5.53 -2.39 -0.01 1.54 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.08 3.27 8.09 -2.39 -0.02 3.25 16 34 H 0.03 1.51 7.61 -2.39 -0.02 1.49 16 35 H 0.26 14.59 7.04 -92.71 -0.65 13.94 16 36 H 0.08 3.17 7.87 -2.39 -0.02 3.15 16 37 H 0.07 2.74 6.02 -2.39 -0.01 2.73 16 38 H 0.07 1.91 6.10 -2.38 -0.01 1.89 16 39 H 0.10 2.03 8.13 -2.39 -0.02 2.01 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.42 7.29 -2.39 -0.02 1.40 16 Total: -1.00 -62.73 319.95 4.78 -57.95 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.12 Total: 20.90 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.20 Total: -20.20 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.54 Total: -80.30 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.93 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.05 Total: 48.59 kcal Total: -62.73 4.78 -57.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026047.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.327 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds