Wall clock time and date at job start Mon Mar 30 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29440 * 117.96028 * 2 1 4 4 C 1.50068 * 124.07520 * 180.46967 * 3 2 1 5 5 C 1.53027 * 110.14565 * 342.86884 * 4 3 2 6 6 C 1.53003 * 109.64184 * 169.33131 * 5 4 3 7 7 C 1.50697 * 109.64108 * 289.75189 * 5 4 3 8 8 O 1.21283 * 120.00099 * 5.57856 * 7 5 4 9 9 N 1.34780 * 119.99969 * 185.58148 * 7 5 4 10 10 C 1.47582 * 134.49225 * 174.93075 * 9 7 5 11 11 C 1.53947 * 86.23970 * 155.42486 * 10 9 7 12 12 C 1.50695 * 113.74355 * 137.90016 * 11 10 9 13 13 H 1.08003 * 119.99851 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00241 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99895 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00130 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47246 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47103 * 120.00004 * 16 14 12 19 19 H 1.48499 * 109.47420 * 239.99935 * 16 14 12 20 20 C 1.47813 * 134.58270 * 354.87748 * 9 7 5 21 21 C 1.53390 * 108.43837 * 49.43723 * 5 4 3 22 22 C 1.50063 * 117.96239 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.46843 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46852 * 119.99665 * 1 2 3 25 25 H 1.08997 * 109.47259 * 240.00300 * 1 2 3 26 26 H 1.08001 * 117.96729 * 0.49138 * 3 2 1 27 27 H 1.08995 * 109.35873 * 222.66144 * 4 3 2 28 28 H 1.08996 * 109.24717 * 103.00072 * 4 3 2 29 29 H 1.08999 * 109.47033 * 185.93710 * 6 5 4 30 30 H 1.08992 * 109.47238 * 305.93891 * 6 5 4 31 31 H 1.08996 * 109.47043 * 65.94206 * 6 5 4 32 32 H 1.08996 * 113.76857 * 41.06591 * 10 9 7 33 33 H 1.08997 * 113.76669 * 269.78138 * 10 9 7 34 34 H 1.09000 * 113.74125 * 269.20561 * 11 10 9 35 35 H 0.96994 * 120.00131 * 179.97438 * 15 14 12 36 36 H 1.09003 * 113.66112 * 90.27320 * 20 9 7 37 37 H 1.08998 * 113.94011 * 318.92400 * 20 9 7 38 38 H 1.08994 * 109.64658 * 52.24837 * 21 5 4 39 39 H 1.08998 * 109.64393 * 172.88346 * 21 5 4 40 40 H 1.09004 * 109.35717 * 283.07585 * 22 2 1 41 41 H 1.09005 * 109.35902 * 42.79589 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3032 -0.0102 5 6 4.2794 -0.0074 0.4031 6 6 5.7834 0.0806 0.1362 7 6 4.0390 -0.2600 1.8692 8 8 3.3090 0.4753 2.4995 9 7 4.6354 -1.3030 2.4799 10 6 4.7047 -1.7839 3.8735 11 6 4.9797 -3.1745 3.2730 12 6 6.0566 -3.9442 3.9933 13 1 6.5542 -3.5070 4.8463 14 6 6.4067 -5.2066 3.5633 15 7 5.8003 -5.7392 2.5249 16 14 7.7420 -6.1604 4.4557 17 1 8.2629 -5.3459 5.5829 18 1 7.1768 -7.4288 4.9819 19 1 8.8475 -6.4650 3.5122 20 6 5.4819 -2.4261 2.0250 21 6 3.6704 -1.1473 -0.4232 22 6 2.2107 -1.3254 -0.0006 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5138 0.8900 26 1 1.5089 2.0379 0.0082 27 1 3.8898 2.0909 0.6877 28 1 3.9314 1.5755 -1.0142 29 1 6.2443 -0.8876 0.3317 30 1 5.9521 0.3600 -0.9037 31 1 6.2251 0.8320 0.7905 32 1 3.7579 -1.7161 4.4092 33 1 5.5429 -1.3755 4.4379 34 1 4.0791 -3.7632 3.0988 35 1 6.0468 -6.6271 2.2221 36 1 6.5492 -2.2054 2.0449 37 1 5.1573 -2.8721 1.0849 38 1 3.7167 -0.8969 -1.4830 39 1 4.2210 -2.0694 -0.2370 40 1 2.1746 -1.7541 1.0010 41 1 1.7136 -1.9981 -0.6996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598026049.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:37 Heat of formation + Delta-G solvation = -6.827612 kcal Electronic energy + Delta-G solvation = -20866.469826 eV Core-core repulsion = 17939.926130 eV Total energy + Delta-G solvation = -2926.543696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37295 -38.04899 -36.35365 -33.87327 -32.63717 -30.69843 -29.24689 -28.30725 -25.25352 -25.15263 -24.54410 -23.03948 -22.11604 -19.76527 -18.46457 -17.11867 -16.62627 -15.81052 -15.35634 -14.82456 -14.64335 -14.49207 -14.00519 -13.87989 -13.36205 -12.92853 -12.74212 -12.40219 -12.36572 -12.18751 -12.09820 -11.76013 -11.69176 -11.55870 -11.34655 -11.23451 -11.06942 -10.84429 -10.75249 -10.40640 -10.19597 -9.93929 -9.49037 -9.22507 -8.80617 -8.56837 -8.42230 -7.73941 -6.18445 -4.23506 2.56146 3.22043 3.30987 3.31634 3.34890 3.67411 4.33278 4.73645 4.83668 4.88209 5.12580 5.20312 5.31761 5.42525 5.53190 5.59734 5.71883 5.73273 5.85965 5.87119 5.91115 5.99746 6.05644 6.09171 6.13789 6.23564 6.25049 6.27804 6.34430 6.36336 6.43003 6.45367 6.61602 6.75721 6.87963 6.93715 7.30156 7.56458 7.79582 8.18283 8.61955 8.80269 8.90353 9.43307 10.91220 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030539 B = 0.005213 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.646759 B = 5369.448307 C = 5507.514012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.129 4.129 3 C -0.140 4.140 4 C -0.062 4.062 5 C -0.076 4.076 6 C -0.142 4.142 7 C 0.539 3.461 8 O -0.559 6.559 9 N -0.639 5.639 10 C 0.102 3.898 11 C 0.033 3.967 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.105 3.895 21 C -0.107 4.107 22 C -0.084 4.084 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 8.807 -7.780 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.129 4.129 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.079 4.079 6 C -0.200 4.200 7 C 0.328 3.672 8 O -0.438 6.438 9 N -0.373 5.373 10 C -0.020 4.020 11 C 0.014 3.986 12 C -0.556 4.556 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.017 4.017 21 C -0.145 4.145 22 C -0.121 4.121 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.043 9.195 -7.655 12.629 hybrid contribution 0.758 -0.554 0.411 1.024 sum -3.285 8.641 -7.244 11.745 Atomic orbital electron populations 1.20891 0.92999 1.01736 1.01586 1.20720 0.95403 0.94959 1.01784 1.21681 0.95659 0.96798 1.01677 1.20276 0.92818 0.96128 1.00706 1.20818 0.96856 0.97153 0.93051 1.21876 0.93331 1.03136 1.01613 1.19975 0.79790 0.78884 0.88519 1.90615 1.38523 1.47513 1.67180 1.50408 1.49852 1.25406 1.11604 1.23441 0.99707 0.95202 0.83682 1.20496 0.97582 0.89724 0.90780 1.21021 1.19487 1.00474 1.14594 0.91911 1.25011 0.96367 0.97268 0.94874 1.69955 1.41311 1.16432 1.24669 0.86512 0.81628 0.79939 0.79816 1.19604 1.20905 1.20922 1.23768 0.93840 0.82905 1.01222 1.21697 0.95706 0.98048 0.99010 1.20358 0.94684 0.94901 1.02152 0.92537 0.92250 0.91999 0.88391 0.90729 0.90874 0.91153 0.91960 0.92510 0.92354 0.91076 0.91850 0.92739 0.90997 0.91709 0.91174 0.90290 0.90749 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.98 36.01 0.36 -1.09 16 2 C -0.13 -1.92 5.53 -100.94 -0.56 -2.47 16 3 C -0.14 -2.07 8.42 -35.90 -0.30 -2.37 16 4 C -0.06 -0.89 4.54 -28.17 -0.13 -1.02 16 5 C -0.08 -1.18 0.55 -155.44 -0.09 -1.27 16 6 C -0.14 -1.96 8.24 37.16 0.31 -1.65 16 7 C 0.54 10.59 5.05 -10.99 -0.06 10.53 16 8 O -0.56 -12.59 15.74 5.55 0.09 -12.51 16 9 N -0.64 -12.94 3.53 -177.42 -0.63 -13.57 16 10 C 0.10 2.14 8.38 -2.97 -0.02 2.12 16 11 C 0.03 0.77 3.62 -90.84 -0.33 0.45 16 12 C -0.52 -13.07 8.77 -34.44 -0.30 -13.38 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -23.78 13.27 55.43 0.74 -23.04 16 16 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.10 2.16 6.02 -2.85 -0.02 2.14 16 21 C -0.11 -1.57 4.82 -26.52 -0.13 -1.70 16 22 C -0.08 -1.29 5.29 -28.19 -0.15 -1.44 16 23 H 0.06 0.64 7.56 -51.93 -0.39 0.25 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.32 7.56 -52.49 -0.40 0.92 16 27 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 28 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.07 1.02 6.00 -51.93 -0.31 0.71 16 30 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 34 H 0.06 1.61 8.13 -51.93 -0.42 1.19 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.07 1.47 7.84 -51.93 -0.41 1.06 16 37 H 0.06 1.31 6.08 -51.93 -0.32 1.00 16 38 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 39 H 0.08 1.23 5.80 -51.93 -0.30 0.93 16 40 H 0.07 1.35 7.41 -51.93 -0.38 0.96 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -28.30 321.53 -8.17 -36.47 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.68 Total: 2.39 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.51 Total: -9.50 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.11 Total: -36.61 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.30 -8.17 -36.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026049.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.638 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds