Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51405 * 136.31158 * 2 1 4 4 C 1.53976 * 87.30127 * 154.04505 * 3 2 1 5 5 C 1.53003 * 113.79601 * 140.00340 * 4 3 2 6 6 C 1.50700 * 114.05364 * 271.65870 * 4 3 2 7 7 O 1.21283 * 120.00194 * 96.11523 * 6 4 3 8 8 N 1.34779 * 119.99734 * 276.10590 * 6 4 3 9 9 C 1.46491 * 120.00049 * 180.02562 * 8 6 4 10 10 H 1.09007 * 110.01700 * 325.06398 * 9 8 6 11 11 C 1.53874 * 110.03568 * 86.45692 * 9 8 6 12 12 C 1.54258 * 106.59994 * 119.28363 * 11 9 8 13 13 C 1.54890 * 104.19873 * 23.61435 * 12 11 9 14 14 H 1.09000 * 110.75429 * 80.36544 * 13 12 11 15 15 C 1.50693 * 110.75788 * 203.55878 * 13 12 11 16 16 H 1.08001 * 119.99991 * 118.54812 * 15 13 12 17 17 C 1.37873 * 119.99956 * 298.54194 * 15 13 12 18 18 N 1.31522 * 119.99968 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00253 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.46979 * 89.99790 * 19 17 15 21 21 H 1.48500 * 109.47216 * 209.99940 * 19 17 15 22 22 H 1.48498 * 109.46862 * 330.00003 * 19 17 15 23 23 C 1.54265 * 110.03653 * 203.62582 * 9 8 6 24 24 C 1.51399 * 136.31702 * 180.37441 * 2 1 3 25 25 H 1.08005 * 119.99846 * 179.62729 * 1 2 3 26 26 H 1.07995 * 120.00080 * 359.35561 * 1 2 3 27 27 H 1.09001 * 113.56331 * 268.62195 * 3 2 1 28 28 H 1.09002 * 113.56448 * 39.36703 * 3 2 1 29 29 H 1.09005 * 109.46623 * 324.01886 * 5 4 3 30 30 H 1.09000 * 109.46985 * 84.01304 * 5 4 3 31 31 H 1.09002 * 109.47217 * 204.01912 * 5 4 3 32 32 H 0.96998 * 119.99973 * 0.02562 * 8 6 4 33 33 H 1.08999 * 110.03597 * 238.57294 * 11 9 8 34 34 H 1.09002 * 110.02860 * 359.97438 * 11 9 8 35 35 H 1.09003 * 110.48571 * 142.29413 * 12 11 9 36 36 H 1.09004 * 110.48911 * 264.80221 * 12 11 9 37 37 H 0.97000 * 119.99815 * 179.97438 * 18 17 15 38 38 H 1.09007 * 110.48222 * 335.78226 * 23 9 8 39 39 H 1.08993 * 110.48799 * 98.42197 * 23 9 8 40 40 H 1.08999 * 113.56148 * 320.63373 * 24 2 1 41 41 H 1.09003 * 113.56164 * 91.37353 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4049 1.0458 0.0000 4 6 3.3077 -0.0043 0.6731 5 6 4.7477 -0.0029 0.1561 6 6 3.2220 -0.0141 2.1777 7 8 2.4868 -0.7992 2.7381 8 7 3.9626 0.8495 2.9004 9 6 3.8798 0.8396 4.3629 10 1 2.8629 0.6047 4.6775 11 6 4.8622 -0.1949 4.9396 12 6 5.8495 0.5848 5.8324 13 6 5.0754 1.8679 6.2242 14 1 4.3838 1.6671 7.0424 15 6 6.0288 2.9751 6.5930 16 1 6.0392 3.8915 6.0215 17 6 6.8877 2.8183 7.6601 18 7 7.7194 3.7849 7.9823 19 14 6.8701 1.2332 8.6482 20 1 7.8299 0.2686 8.0537 21 1 7.2620 1.5203 10.0515 22 1 5.5044 0.6506 8.6250 23 6 4.3043 2.2118 4.9256 24 6 2.4049 -1.0456 -0.0068 25 1 -0.5400 -0.9353 -0.0061 26 1 -0.5400 0.9352 0.0105 27 1 2.7365 1.3294 -0.9988 28 1 2.1864 1.9054 0.6337 29 1 4.7500 0.2153 -0.9119 30 1 5.3224 0.7583 0.6837 31 1 5.1964 -0.9813 0.3280 32 1 4.5504 1.4775 2.4521 33 1 4.3223 -0.9314 5.5347 34 1 5.4003 -0.6899 4.1311 35 1 6.1007 0.0047 6.7204 36 1 6.7515 0.8364 5.2745 37 1 8.3234 3.6747 8.7332 38 1 4.9558 2.7282 4.2205 39 1 3.4280 2.8190 5.1518 40 1 2.1865 -1.9093 0.6213 41 1 2.7366 -1.3227 -1.0075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601610723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = -6.307263 kcal Electronic energy + Delta-G solvation = -20134.302024 eV Core-core repulsion = 17207.780892 eV Total energy + Delta-G solvation = -2926.521132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76114 -38.37961 -36.83356 -33.82950 -32.31214 -31.61358 -28.53269 -27.95511 -27.48477 -26.00299 -24.03357 -22.89893 -20.00859 -19.78911 -19.03240 -18.22172 -16.92629 -16.57326 -15.77968 -15.31001 -15.00700 -14.73014 -14.49820 -14.06458 -13.89913 -13.23526 -13.07838 -12.77177 -12.67731 -12.54410 -12.44400 -12.29929 -11.65126 -11.16551 -10.99808 -10.97163 -10.95657 -10.48537 -10.28651 -10.13873 -9.99185 -9.78904 -9.60781 -9.46789 -9.18768 -9.03692 -8.71834 -8.54681 -6.08993 -4.08214 2.12943 2.72802 3.28884 3.33407 3.38722 3.40668 4.14744 4.38006 4.38352 4.41474 4.73002 4.95310 5.15579 5.19862 5.32401 5.39397 5.43860 5.45096 5.55016 5.55787 5.59158 5.72450 5.81614 5.86528 6.03722 6.12054 6.13581 6.29611 6.31565 6.41541 6.48071 6.55969 6.68249 6.79806 6.82668 7.01170 7.07386 7.50144 7.72202 7.76657 8.41154 8.50247 8.93944 9.54201 11.04190 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039016 B = 0.004243 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.487677 B = 6597.081614 C = 6676.824273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 C -0.088 4.088 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.535 3.465 7 O -0.539 6.539 8 N -0.715 5.715 9 C 0.137 3.863 10 H 0.082 0.918 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.015 3.985 14 H 0.034 0.966 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.882 3.118 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.265 1.265 23 C -0.110 4.110 24 C -0.085 4.085 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.399 0.601 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 -7.298 -17.196 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.191 4.191 6 C 0.320 3.680 7 O -0.416 6.416 8 N -0.365 5.365 9 C 0.034 3.966 10 H 0.100 0.900 11 C -0.169 4.169 12 C -0.168 4.168 13 C -0.004 4.004 14 H 0.053 0.947 15 C -0.548 4.548 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.541 5.541 19 Si 0.711 3.289 20 H -0.205 1.205 21 H -0.223 1.223 22 H -0.190 1.190 23 C -0.148 4.148 24 C -0.123 4.123 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.234 0.766 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.980 -7.802 -16.642 20.457 hybrid contribution 0.486 -0.533 0.469 0.860 sum -8.494 -8.336 -16.174 20.080 Atomic orbital electron populations 1.22786 0.93403 1.02002 1.02357 1.22624 0.93884 0.98087 1.00084 1.22331 0.93305 0.96027 1.00909 1.21776 0.96585 1.00338 0.92566 1.21713 0.93231 1.02876 1.01293 1.19787 0.79612 0.80555 0.88009 1.90670 1.39337 1.39166 1.72452 1.46268 1.44829 1.37764 1.07663 1.21842 0.99838 0.97314 0.77649 0.89987 1.22548 0.97556 0.97597 0.99182 1.22820 0.98529 0.97717 0.97741 1.20056 0.94553 0.93241 0.92573 0.94749 1.20963 1.18125 1.01344 1.14402 0.90833 1.24983 0.95006 0.96240 0.96793 1.69904 1.22798 1.32652 1.28703 0.86901 0.78960 0.84067 0.78935 1.20454 1.22264 1.18959 1.22568 0.99685 0.93468 0.99052 1.22153 0.92793 0.96935 1.00376 0.87676 0.87797 0.88001 0.90639 0.91393 0.91736 0.91715 0.76624 0.92299 0.92487 0.93581 0.91470 0.92681 0.91374 0.92211 0.89705 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 14.71 29.01 0.43 -1.31 16 2 C -0.15 -1.61 6.81 -100.39 -0.68 -2.29 16 3 C -0.09 -0.85 7.12 -27.24 -0.19 -1.04 16 4 C -0.11 -1.19 1.32 -154.81 -0.20 -1.39 16 5 C -0.13 -1.15 9.16 37.16 0.34 -0.81 16 6 C 0.54 7.91 6.70 -10.98 -0.07 7.83 16 7 O -0.54 -10.01 15.50 5.56 0.09 -9.92 16 8 N -0.71 -10.26 4.87 -52.72 -0.26 -10.52 16 9 C 0.14 2.35 3.23 -66.82 -0.22 2.13 16 10 H 0.08 1.49 7.61 -51.92 -0.39 1.09 16 11 C -0.13 -2.35 6.59 -25.62 -0.17 -2.52 16 12 C -0.13 -2.73 5.08 -25.08 -0.13 -2.86 16 13 C 0.01 0.34 2.29 -89.78 -0.21 0.13 16 14 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 15 C -0.51 -13.90 9.14 -34.45 -0.31 -14.22 16 16 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 17 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 18 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 19 Si 0.88 21.72 24.46 -169.99 -4.16 17.57 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.26 -6.28 6.48 56.52 0.37 -5.91 16 23 C -0.11 -2.05 5.95 -25.07 -0.15 -2.20 16 24 C -0.09 -0.90 6.89 -27.40 -0.19 -1.09 16 25 H 0.11 0.99 8.06 -52.48 -0.42 0.57 16 26 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.10 0.75 7.95 -51.93 -0.41 0.33 16 28 H 0.07 0.77 8.11 -51.93 -0.42 0.34 16 29 H 0.07 0.45 7.93 -51.93 -0.41 0.04 16 30 H 0.06 0.54 6.97 -51.93 -0.36 0.18 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.85 7.20 -40.82 -0.29 4.56 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 35 H 0.05 1.00 4.89 -51.93 -0.25 0.74 16 36 H 0.07 1.44 8.05 -51.93 -0.42 1.02 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.24 7.63 -51.92 -0.40 0.84 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.06 7.46 -51.93 -0.39 0.67 16 41 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -31.53 323.98 -7.20 -38.73 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.67 Total: 3.45 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -1.85 Total: -17.71 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.52 Total: -37.00 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.16 Total: 17.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.53 -7.20 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601610723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.427 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds