Wall clock time and date at job start Mon Mar 30 2020 06:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51405 * 136.31158 * 2 1 4 4 C 1.53976 * 87.30127 * 154.04505 * 3 2 1 5 5 C 1.53003 * 113.79601 * 140.00340 * 4 3 2 6 6 C 1.50700 * 114.05364 * 271.65870 * 4 3 2 7 7 O 1.21283 * 120.00194 * 96.11523 * 6 4 3 8 8 N 1.34779 * 119.99734 * 276.10590 * 6 4 3 9 9 C 1.46491 * 120.00049 * 180.02562 * 8 6 4 10 10 H 1.09007 * 110.01700 * 325.06398 * 9 8 6 11 11 C 1.53874 * 110.03568 * 86.45692 * 9 8 6 12 12 C 1.54258 * 106.59994 * 119.28363 * 11 9 8 13 13 C 1.54890 * 104.19873 * 23.61435 * 12 11 9 14 14 H 1.09000 * 110.75429 * 80.36544 * 13 12 11 15 15 C 1.50693 * 110.75788 * 203.55878 * 13 12 11 16 16 H 1.08001 * 119.99991 * 118.54812 * 15 13 12 17 17 C 1.37873 * 119.99956 * 298.54194 * 15 13 12 18 18 N 1.31522 * 119.99968 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00253 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.46979 * 89.99790 * 19 17 15 21 21 H 1.48500 * 109.47216 * 209.99940 * 19 17 15 22 22 H 1.48498 * 109.46862 * 330.00003 * 19 17 15 23 23 C 1.54265 * 110.03653 * 203.62582 * 9 8 6 24 24 C 1.51399 * 136.31702 * 180.37441 * 2 1 3 25 25 H 1.08005 * 119.99846 * 179.62729 * 1 2 3 26 26 H 1.07995 * 120.00080 * 359.35561 * 1 2 3 27 27 H 1.09001 * 113.56331 * 268.62195 * 3 2 1 28 28 H 1.09002 * 113.56448 * 39.36703 * 3 2 1 29 29 H 1.09005 * 109.46623 * 324.01886 * 5 4 3 30 30 H 1.09000 * 109.46985 * 84.01304 * 5 4 3 31 31 H 1.09002 * 109.47217 * 204.01912 * 5 4 3 32 32 H 0.96998 * 119.99973 * 0.02562 * 8 6 4 33 33 H 1.08999 * 110.03597 * 238.57294 * 11 9 8 34 34 H 1.09002 * 110.02860 * 359.97438 * 11 9 8 35 35 H 1.09003 * 110.48571 * 142.29413 * 12 11 9 36 36 H 1.09004 * 110.48911 * 264.80221 * 12 11 9 37 37 H 0.97000 * 119.99815 * 179.97438 * 18 17 15 38 38 H 1.09007 * 110.48222 * 335.78226 * 23 9 8 39 39 H 1.08993 * 110.48799 * 98.42197 * 23 9 8 40 40 H 1.08999 * 113.56148 * 320.63373 * 24 2 1 41 41 H 1.09003 * 113.56164 * 91.37353 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4049 1.0458 0.0000 4 6 3.3077 -0.0043 0.6731 5 6 4.7477 -0.0029 0.1561 6 6 3.2220 -0.0141 2.1777 7 8 2.4868 -0.7992 2.7381 8 7 3.9626 0.8495 2.9004 9 6 3.8798 0.8396 4.3629 10 1 2.8629 0.6047 4.6775 11 6 4.8622 -0.1949 4.9396 12 6 5.8495 0.5848 5.8324 13 6 5.0754 1.8679 6.2242 14 1 4.3838 1.6671 7.0424 15 6 6.0288 2.9751 6.5930 16 1 6.0392 3.8915 6.0215 17 6 6.8877 2.8183 7.6601 18 7 7.7194 3.7849 7.9823 19 14 6.8701 1.2332 8.6482 20 1 7.8299 0.2686 8.0537 21 1 7.2620 1.5203 10.0515 22 1 5.5044 0.6506 8.6250 23 6 4.3043 2.2118 4.9256 24 6 2.4049 -1.0456 -0.0068 25 1 -0.5400 -0.9353 -0.0061 26 1 -0.5400 0.9352 0.0105 27 1 2.7365 1.3294 -0.9988 28 1 2.1864 1.9054 0.6337 29 1 4.7500 0.2153 -0.9119 30 1 5.3224 0.7583 0.6837 31 1 5.1964 -0.9813 0.3280 32 1 4.5504 1.4775 2.4521 33 1 4.3223 -0.9314 5.5347 34 1 5.4003 -0.6899 4.1311 35 1 6.1007 0.0047 6.7204 36 1 6.7515 0.8364 5.2745 37 1 8.3234 3.6747 8.7332 38 1 4.9558 2.7282 4.2205 39 1 3.4280 2.8190 5.1518 40 1 2.1865 -1.9093 0.6213 41 1 2.7366 -1.3227 -1.0075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601610723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:49 Heat of formation + Delta-G solvation = -25.948552 kcal Electronic energy + Delta-G solvation = -20135.153734 eV Core-core repulsion = 17207.780892 eV Total energy + Delta-G solvation = -2927.372842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78054 -39.65504 -38.15547 -35.35348 -34.11051 -32.58285 -30.25609 -29.30196 -28.38516 -26.77555 -25.74507 -24.15685 -21.51276 -21.23080 -20.35522 -19.10229 -18.84393 -17.57121 -17.17481 -16.87661 -16.25697 -15.91641 -15.55740 -15.38618 -14.91936 -14.82145 -14.27844 -14.12054 -13.99509 -13.90253 -13.43094 -13.33345 -13.03095 -12.85705 -12.62610 -12.32049 -11.84419 -11.77759 -11.73402 -11.63862 -11.54645 -11.27426 -11.06882 -11.05254 -10.78949 -10.69685 -10.06787 -9.94562 -8.28474 -6.31078 1.32807 1.35312 1.37136 1.46580 1.60400 2.19689 2.34459 3.07447 3.35812 3.57869 3.60023 3.68246 3.86163 3.89875 4.06368 4.19676 4.44801 4.58487 4.62620 4.69688 4.73354 4.75929 4.82925 4.88393 4.89969 4.92109 4.95334 5.00072 5.05686 5.09340 5.15355 5.21962 5.37098 5.38434 5.55152 5.60919 5.65653 5.76798 6.01985 6.32406 6.60335 6.75346 7.27431 7.34780 8.88086 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039016 B = 0.004243 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.487677 B = 6597.081614 C = 6676.824273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.169 4.169 3 C -0.078 4.078 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.532 3.468 7 O -0.581 6.581 8 N -0.707 5.707 9 C 0.149 3.851 10 H 0.074 0.926 11 C -0.121 4.121 12 C -0.126 4.126 13 C 0.006 3.994 14 H 0.029 0.971 15 C -0.510 4.510 16 H 0.040 0.960 17 C 0.016 3.984 18 N -0.950 5.950 19 Si 0.939 3.061 20 H -0.267 1.267 21 H -0.298 1.298 22 H -0.250 1.250 23 C -0.100 4.100 24 C -0.084 4.084 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.411 0.589 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.265 0.735 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 -8.464 -19.037 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.188 4.188 6 C 0.319 3.681 7 O -0.461 6.461 8 N -0.358 5.358 9 C 0.044 3.956 10 H 0.092 0.908 11 C -0.160 4.160 12 C -0.164 4.164 13 C -0.013 4.013 14 H 0.047 0.953 15 C -0.548 4.548 16 H 0.058 0.942 17 C -0.181 4.181 18 N -0.590 5.590 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.225 1.225 22 H -0.174 1.174 23 C -0.138 4.138 24 C -0.121 4.121 25 H 0.125 0.875 26 H 0.131 0.869 27 H 0.150 0.850 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.249 0.751 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.329 -8.961 -18.517 22.588 hybrid contribution 0.551 -0.099 1.011 1.155 sum -8.778 -9.060 -17.506 21.578 Atomic orbital electron populations 1.22985 0.93613 1.02652 1.02022 1.22931 0.94446 0.99028 1.00532 1.22386 0.92012 0.94964 1.02129 1.21724 0.98493 1.01312 0.89565 1.21750 0.91249 1.02868 1.02966 1.20503 0.78418 0.79445 0.89745 1.90653 1.40977 1.40769 1.73651 1.46129 1.45084 1.38122 1.06496 1.21502 0.99015 0.95753 0.79368 0.90800 1.22468 0.97002 0.97480 0.99067 1.22677 0.98720 0.96913 0.98067 1.20034 0.94158 0.92776 0.94331 0.95295 1.21260 1.18500 1.01447 1.13561 0.94177 1.25775 0.94821 0.99374 0.98128 1.70040 1.24233 1.34974 1.29788 0.85975 0.79882 0.80426 0.77173 1.19202 1.22516 1.17402 1.22421 0.99461 0.94627 0.97308 1.22231 0.92764 0.95805 1.01280 0.87480 0.86880 0.84961 0.91261 0.88667 0.91466 0.92062 0.75136 0.91988 0.91178 0.94063 0.92112 0.92639 0.90952 0.91632 0.92216 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 14.71 67.78 1.00 -2.39 16 2 C -0.17 -3.39 6.81 -16.05 -0.11 -3.50 16 3 C -0.08 -1.26 7.12 30.26 0.22 -1.05 16 4 C -0.11 -2.07 1.32 -52.37 -0.07 -2.14 16 5 C -0.13 -1.79 9.16 71.98 0.66 -1.13 16 6 C 0.53 14.81 6.70 87.66 0.59 15.39 16 7 O -0.58 -21.09 15.50 -3.04 -0.05 -21.14 16 8 N -0.71 -18.90 4.87 -439.11 -2.14 -21.03 16 9 C 0.15 4.83 3.23 45.72 0.15 4.98 16 10 H 0.07 2.58 7.61 -2.38 -0.02 2.56 16 11 C -0.12 -4.14 6.59 31.32 0.21 -3.93 16 12 C -0.13 -5.08 5.08 31.67 0.16 -4.92 16 13 C 0.01 0.28 2.29 -10.25 -0.02 0.25 16 14 H 0.03 1.33 7.37 -2.39 -0.02 1.31 16 15 C -0.51 -28.10 9.14 25.60 0.23 -27.86 16 16 H 0.04 2.42 8.03 -2.91 -0.02 2.39 16 17 C 0.02 0.92 5.46 84.65 0.46 1.38 16 18 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 19 Si 0.94 44.57 24.46 68.60 1.68 46.24 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.25 -11.16 6.48 99.48 0.64 -10.52 16 23 C -0.10 -3.63 5.95 31.67 0.19 -3.44 16 24 C -0.08 -1.60 6.89 30.16 0.21 -1.39 16 25 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.11 1.89 8.06 -2.91 -0.02 1.86 16 27 H 0.13 1.35 7.95 -2.39 -0.02 1.33 16 28 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 29 H 0.09 0.81 7.93 -2.38 -0.02 0.79 16 30 H 0.07 0.89 6.97 -2.39 -0.02 0.87 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.41 9.00 7.20 -92.71 -0.67 8.33 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 35 H 0.04 1.70 4.89 -2.39 -0.01 1.68 16 36 H 0.06 2.51 8.05 -2.38 -0.02 2.49 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.07 2.55 7.63 -2.38 -0.02 2.53 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 1.45 7.46 -2.39 -0.02 1.43 16 41 H 0.13 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -68.93 323.98 3.93 -65.00 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.28 Total: 18.97 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.86 Total: -29.74 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.84 Total: -79.34 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.05 Total: -21.14 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.68 Total: 46.24 kcal Total: -68.93 3.93 -65.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601610723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.050 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds