Wall clock time and date at job start Mon Mar 30 2020 07:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 120.00039 * 2 1 4 4 C 1.50702 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.32871 * 120.00039 * 180.02562 * 3 2 1 6 6 C 1.50695 * 120.00083 * 174.08773 * 5 3 2 7 7 C 1.50695 * 109.47270 * 234.27785 * 6 5 3 8 8 O 1.21278 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00179 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00232 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47371 * 89.99433 * 10 9 7 12 12 H 1.08004 * 119.99483 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99881 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47058 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47280 * 119.99962 * 15 13 11 18 18 H 1.48500 * 109.47173 * 240.00174 * 15 13 11 19 19 C 1.46496 * 120.00206 * 0.02562 * 9 7 6 20 20 C 1.53000 * 109.47308 * 89.99783 * 19 9 7 21 21 C 1.53001 * 117.50283 * 243.62738 * 20 19 9 22 22 C 1.52999 * 117.50049 * 175.00317 * 20 19 9 23 23 H 1.08000 * 119.99988 * 179.97438 * 1 2 3 24 24 H 1.08006 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99429 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46831 * 265.15811 * 4 3 2 27 27 H 1.08997 * 109.46834 * 25.15721 * 4 3 2 28 28 H 1.08998 * 109.46947 * 145.15797 * 4 3 2 29 29 H 1.08005 * 119.99661 * 354.08467 * 5 3 2 30 30 H 1.08997 * 109.47533 * 354.28346 * 6 5 3 31 31 H 1.09000 * 109.47077 * 114.27978 * 6 5 3 32 32 H 1.08993 * 109.47346 * 209.99990 * 10 9 7 33 33 H 1.09006 * 109.46719 * 329.99741 * 10 9 7 34 34 H 0.96996 * 119.99402 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47179 * 210.00445 * 19 9 7 36 36 H 1.09009 * 109.46997 * 330.00388 * 19 9 7 37 37 H 1.08998 * 115.54343 * 29.33389 * 20 19 9 38 38 H 1.08999 * 117.49755 * 359.97438 * 21 20 19 39 39 H 1.08996 * 117.49911 * 145.02435 * 21 20 19 40 40 H 1.08999 * 117.49892 * 214.98516 * 22 20 19 41 41 H 1.09000 * 117.49790 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1464 2.5722 -0.1349 7 6 5.1155 2.4738 -1.2847 8 8 5.1870 1.4504 -1.9317 9 7 5.9029 3.5230 -1.5942 10 6 6.8446 3.4276 -2.7123 11 6 6.1682 3.8841 -3.9793 12 1 5.1397 4.2129 -3.9540 13 6 6.8622 3.8820 -5.1706 14 7 8.1144 3.4812 -5.2014 15 14 6.0239 4.4486 -6.7409 16 1 4.6254 4.8469 -6.4394 17 1 6.7587 5.6102 -7.3029 18 1 6.0213 3.3396 -7.7285 19 6 5.8170 4.7590 -0.8124 20 6 6.8017 4.6924 0.3567 21 6 6.2204 4.7097 1.7719 22 6 6.9484 5.9410 1.2288 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8686 -0.9354 -0.0004 26 1 1.2039 2.9374 -1.0233 27 1 0.3238 2.4286 0.4378 28 1 1.8598 3.3154 0.5877 29 1 3.9330 0.3436 0.0955 30 1 3.4425 3.3832 -0.3214 31 1 4.6944 2.7712 0.7860 32 1 7.7096 4.0604 -2.5139 33 1 7.1696 2.3933 -2.8263 34 1 8.6025 3.4794 -6.0396 35 1 6.0647 5.6090 -1.4482 36 1 4.8038 4.8759 -0.4278 37 1 7.6939 4.0900 0.1861 38 1 5.1364 4.7690 1.8700 39 1 6.7301 4.1186 2.5326 40 1 7.9370 6.1598 1.6322 41 1 6.3437 6.8100 0.9693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616035082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:33 Heat of formation + Delta-G solvation = 15.183868 kcal Electronic energy + Delta-G solvation = -19804.589951 eV Core-core repulsion = 16879.000745 eV Total energy + Delta-G solvation = -2925.589206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29855 -37.28520 -36.64433 -34.38161 -32.63895 -32.14637 -28.95202 -27.73431 -26.66013 -25.64404 -22.86681 -22.30405 -20.87055 -20.54821 -18.37746 -17.68062 -16.75184 -16.45860 -15.82059 -15.39511 -14.74158 -14.67426 -14.35436 -13.83579 -13.72512 -13.33708 -12.86202 -12.61519 -12.36775 -12.26729 -11.93912 -11.58394 -11.44077 -11.39962 -11.25219 -11.19311 -10.83772 -10.74116 -10.58391 -10.41369 -10.32911 -10.07547 -9.82024 -9.58030 -8.88249 -8.42060 -8.05615 -7.64605 -6.02756 -4.07077 1.46482 3.11796 3.30647 3.38090 3.41587 3.48591 3.82844 4.07152 4.46751 4.80216 4.88733 4.95603 5.02987 5.05638 5.30536 5.30927 5.33160 5.44620 5.47476 5.57077 5.59749 5.67720 5.74986 5.80793 5.87428 5.93062 5.98985 6.08675 6.09814 6.17173 6.43400 6.46883 6.57290 6.80698 7.05055 7.11057 7.47103 7.57694 7.94216 8.25764 8.45323 8.92874 9.13966 9.58091 11.05421 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.006158 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.626558 B = 4545.698623 C = 6107.610404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.100 4.100 6 C -0.122 4.122 7 C 0.512 3.488 8 O -0.539 6.539 9 N -0.596 5.596 10 C 0.246 3.754 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.142 3.858 20 C -0.165 4.165 21 C -0.186 4.186 22 C -0.176 4.176 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 1.846 14.946 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.122 4.122 3 C -0.127 4.127 4 C -0.176 4.176 5 C -0.118 4.118 6 C -0.161 4.161 7 C 0.298 3.702 8 O -0.416 6.416 9 N -0.327 5.327 10 C 0.127 3.873 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C 0.018 3.982 20 C -0.184 4.184 21 C -0.223 4.223 22 C -0.214 4.214 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.977 1.281 14.443 17.054 hybrid contribution -0.248 0.326 -0.934 1.020 sum -9.225 1.607 13.510 16.438 Atomic orbital electron populations 1.24319 0.95701 1.01710 1.02095 1.21861 0.95235 0.96153 0.98953 1.20469 0.93904 0.94187 1.04123 1.20848 0.99800 0.94657 1.02266 1.22894 0.93815 0.98171 0.96936 1.20931 0.98544 0.97545 0.99093 1.20161 0.81416 0.83798 0.84788 1.90668 1.68260 1.29892 1.52791 1.48185 1.39964 1.12140 1.32438 1.19278 0.87192 0.98721 0.82155 1.21475 0.98580 1.43563 0.92687 0.92473 1.24929 0.94873 0.95333 0.98969 1.69945 1.09217 1.47418 1.26823 0.86461 0.79558 0.78272 0.83243 1.19832 1.20977 1.20888 1.21008 0.96955 0.88941 0.91313 1.22950 1.02208 1.01578 0.91692 1.23054 0.99941 1.02028 0.97286 1.22893 1.01907 0.92320 1.04274 0.88458 0.88201 0.86959 0.91459 0.91814 0.91558 0.86586 0.88734 0.88336 0.94980 0.93930 0.92817 0.89513 0.91511 0.87385 0.88895 0.89164 0.89019 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 14.11 28.88 0.41 -1.74 16 2 C -0.10 -1.30 9.83 -37.83 -0.37 -1.67 16 3 C -0.13 -1.72 5.98 -102.87 -0.62 -2.33 16 4 C -0.12 -1.36 8.54 36.01 0.31 -1.05 16 5 C -0.10 -1.50 8.45 -36.16 -0.31 -1.81 16 6 C -0.12 -1.83 4.32 -29.04 -0.13 -1.96 16 7 C 0.51 10.71 7.67 -10.99 -0.08 10.63 16 8 O -0.54 -13.82 15.61 5.56 0.09 -13.73 16 9 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 10 C 0.25 6.43 5.16 -5.19 -0.03 6.41 16 11 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 12 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.14 2.27 5.49 -4.04 -0.02 2.25 16 20 C -0.16 -2.26 5.95 -90.62 -0.54 -2.80 16 21 C -0.19 -2.00 9.18 -26.73 -0.25 -2.25 16 22 C -0.18 -1.93 10.25 -26.73 -0.27 -2.21 16 23 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 24 H 0.10 0.98 6.06 -52.48 -0.32 0.66 16 25 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.62 6.20 -51.93 -0.32 0.29 16 28 H 0.07 0.67 6.70 -51.93 -0.35 0.32 16 29 H 0.12 1.80 8.05 -52.48 -0.42 1.38 16 30 H 0.09 1.28 5.05 -51.93 -0.26 1.01 16 31 H 0.10 1.27 6.84 -51.93 -0.36 0.91 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 36 H 0.07 0.89 6.18 -51.92 -0.32 0.57 16 37 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -32.79 341.46 -8.28 -41.07 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.49 Total: 1.60 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.32 Total: -12.13 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.31 Total: -38.97 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.79 -8.28 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616035082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.253 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds