Wall clock time and date at job start Mon Mar 30 2020 07:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47112 * 120.00039 * 2 1 4 4 C 1.50702 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.32871 * 120.00039 * 180.02562 * 3 2 1 6 6 C 1.50695 * 120.00083 * 174.08773 * 5 3 2 7 7 C 1.50695 * 109.47270 * 234.27785 * 6 5 3 8 8 O 1.21278 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00179 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00232 * 180.02562 * 9 7 6 11 11 C 1.50705 * 109.47371 * 89.99433 * 10 9 7 12 12 H 1.08004 * 119.99483 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99654 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99881 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47058 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47280 * 119.99962 * 15 13 11 18 18 H 1.48500 * 109.47173 * 240.00174 * 15 13 11 19 19 C 1.46496 * 120.00206 * 0.02562 * 9 7 6 20 20 C 1.53000 * 109.47308 * 89.99783 * 19 9 7 21 21 C 1.53001 * 117.50283 * 243.62738 * 20 19 9 22 22 C 1.52999 * 117.50049 * 175.00317 * 20 19 9 23 23 H 1.08000 * 119.99988 * 179.97438 * 1 2 3 24 24 H 1.08006 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99429 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46831 * 265.15811 * 4 3 2 27 27 H 1.08997 * 109.46834 * 25.15721 * 4 3 2 28 28 H 1.08998 * 109.46947 * 145.15797 * 4 3 2 29 29 H 1.08005 * 119.99661 * 354.08467 * 5 3 2 30 30 H 1.08997 * 109.47533 * 354.28346 * 6 5 3 31 31 H 1.09000 * 109.47077 * 114.27978 * 6 5 3 32 32 H 1.08993 * 109.47346 * 209.99990 * 10 9 7 33 33 H 1.09006 * 109.46719 * 329.99741 * 10 9 7 34 34 H 0.96996 * 119.99402 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.47179 * 210.00445 * 19 9 7 36 36 H 1.09009 * 109.46997 * 330.00388 * 19 9 7 37 37 H 1.08998 * 115.54343 * 29.33389 * 20 19 9 38 38 H 1.08999 * 117.49755 * 359.97438 * 21 20 19 39 39 H 1.08996 * 117.49911 * 145.02435 * 21 20 19 40 40 H 1.08999 * 117.49892 * 214.98516 * 22 20 19 41 41 H 1.09000 * 117.49790 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1464 2.5722 -0.1349 7 6 5.1155 2.4738 -1.2847 8 8 5.1870 1.4504 -1.9317 9 7 5.9029 3.5230 -1.5942 10 6 6.8446 3.4276 -2.7123 11 6 6.1682 3.8841 -3.9793 12 1 5.1397 4.2129 -3.9540 13 6 6.8622 3.8820 -5.1706 14 7 8.1144 3.4812 -5.2014 15 14 6.0239 4.4486 -6.7409 16 1 4.6254 4.8469 -6.4394 17 1 6.7587 5.6102 -7.3029 18 1 6.0213 3.3396 -7.7285 19 6 5.8170 4.7590 -0.8124 20 6 6.8017 4.6924 0.3567 21 6 6.2204 4.7097 1.7719 22 6 6.9484 5.9410 1.2288 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 -0.0004 25 1 1.8686 -0.9354 -0.0004 26 1 1.2039 2.9374 -1.0233 27 1 0.3238 2.4286 0.4378 28 1 1.8598 3.3154 0.5877 29 1 3.9330 0.3436 0.0955 30 1 3.4425 3.3832 -0.3214 31 1 4.6944 2.7712 0.7860 32 1 7.7096 4.0604 -2.5139 33 1 7.1696 2.3933 -2.8263 34 1 8.6025 3.4794 -6.0396 35 1 6.0647 5.6090 -1.4482 36 1 4.8038 4.8759 -0.4278 37 1 7.6939 4.0900 0.1861 38 1 5.1364 4.7690 1.8700 39 1 6.7301 4.1186 2.5326 40 1 7.9370 6.1598 1.6322 41 1 6.3437 6.8100 0.9693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616035082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:32 Heat of formation + Delta-G solvation = -3.333570 kcal Electronic energy + Delta-G solvation = -19805.392928 eV Core-core repulsion = 16879.000745 eV Total energy + Delta-G solvation = -2926.392183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86700 -38.41227 -37.76387 -36.10679 -34.61156 -33.35578 -30.39216 -29.21395 -27.83410 -27.16263 -24.78304 -23.15507 -22.06505 -21.65910 -19.85358 -18.76123 -18.61184 -18.10221 -17.20008 -16.97518 -16.16323 -16.01400 -15.86453 -15.00265 -14.84275 -14.54036 -14.35931 -14.10002 -13.70670 -13.64592 -13.46610 -13.08222 -12.91816 -12.59099 -12.53725 -12.47370 -12.28521 -12.23827 -12.21434 -11.72866 -11.67461 -11.36814 -11.22988 -10.89875 -10.65777 -10.51834 -9.44392 -9.07800 -8.23124 -6.38006 0.46035 1.35039 1.37670 1.49474 1.85223 2.09058 2.33215 2.49996 2.99667 3.06370 3.74742 3.79300 3.95866 4.02693 4.06612 4.16745 4.30818 4.38173 4.45529 4.46798 4.59749 4.76785 4.81210 4.85484 4.88256 4.91254 5.00897 5.03526 5.09969 5.14389 5.22444 5.34564 5.35921 5.50730 5.56641 5.61558 5.81432 5.85607 6.05968 6.07105 6.69820 6.81057 7.28024 7.50472 8.84358 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.006158 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.626558 B = 4545.698623 C = 6107.610404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.144 4.144 3 C -0.109 4.109 4 C -0.124 4.124 5 C -0.141 4.141 6 C -0.098 4.098 7 C 0.500 3.500 8 O -0.599 6.599 9 N -0.600 5.600 10 C 0.262 3.738 11 C -0.541 4.541 12 H 0.053 0.947 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.282 1.282 19 C 0.142 3.858 20 C -0.195 4.195 21 C -0.165 4.165 22 C -0.161 4.161 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.020 0.980 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 3.703 16.348 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.109 4.109 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.136 4.136 7 C 0.290 3.710 8 O -0.481 6.481 9 N -0.330 5.330 10 C 0.141 3.859 11 C -0.579 4.579 12 H 0.072 0.928 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.208 1.208 19 C 0.019 3.981 20 C -0.215 4.215 21 C -0.201 4.201 22 C -0.199 4.199 23 H 0.134 0.866 24 H 0.132 0.868 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.038 0.962 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.914 3.180 15.894 20.116 hybrid contribution 0.591 -0.316 -1.328 1.487 sum -11.323 2.864 14.566 18.670 Atomic orbital electron populations 1.24641 0.94924 1.03329 0.97863 1.21964 0.96215 0.95853 1.02176 1.20828 0.93547 0.95768 1.00781 1.20965 1.00938 0.93620 1.02454 1.22755 0.94584 0.97493 1.01106 1.20802 0.97342 0.98483 0.97016 1.21302 0.81550 0.82546 0.85643 1.90627 1.70093 1.32148 1.55221 1.48181 1.38870 1.14305 1.31633 1.18689 0.88065 0.95184 0.83971 1.21735 0.98482 1.43791 0.93914 0.92824 1.25878 0.95511 0.95210 1.02621 1.70068 1.10713 1.48179 1.27982 0.85359 0.78805 0.78097 0.78498 1.19005 1.19268 1.20830 1.21248 0.99622 0.85945 0.91267 1.22656 1.01491 1.04506 0.92837 1.23199 1.01336 1.01123 0.94472 1.23012 1.02747 0.92096 1.02033 0.86618 0.86764 0.87482 0.91981 0.89667 0.89730 0.88578 0.86298 0.85822 0.96183 0.98870 0.92437 0.90880 0.87959 0.90397 0.86605 0.88332 0.88365 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 14.11 66.64 0.94 -2.17 16 2 C -0.14 -3.40 9.83 23.42 0.23 -3.17 16 3 C -0.11 -2.80 5.98 -18.71 -0.11 -2.91 16 4 C -0.12 -2.39 8.54 71.24 0.61 -1.78 16 5 C -0.14 -4.24 8.45 24.51 0.21 -4.03 16 6 C -0.10 -2.83 4.32 29.10 0.13 -2.71 16 7 C 0.50 21.66 7.67 87.65 0.67 22.33 16 8 O -0.60 -32.77 15.61 -3.02 -0.05 -32.81 16 9 N -0.60 -26.16 2.46 -826.15 -2.03 -28.19 16 10 C 0.26 14.65 5.16 85.63 0.44 15.09 16 11 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 12 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 13 C 0.01 0.38 5.46 84.65 0.46 0.85 16 14 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 15 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 C 0.14 4.45 5.49 86.38 0.47 4.93 16 20 C -0.20 -5.23 5.95 -10.79 -0.06 -5.29 16 21 C -0.16 -3.01 9.18 30.59 0.28 -2.73 16 22 C -0.16 -3.13 10.25 30.59 0.31 -2.81 16 23 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 24 H 0.11 1.75 6.06 -2.91 -0.02 1.73 16 25 H 0.11 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.28 6.20 -2.39 -0.01 1.26 16 28 H 0.08 1.33 6.70 -2.39 -0.02 1.32 16 29 H 0.10 3.19 8.05 -2.91 -0.02 3.17 16 30 H 0.12 2.85 5.05 -2.39 -0.01 2.84 16 31 H 0.12 2.90 6.84 -2.39 -0.02 2.88 16 32 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 33 H -0.01 -0.44 7.42 -2.38 -0.02 -0.46 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.10 2.44 6.18 -2.38 -0.01 2.43 16 37 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.12 1.63 7.87 -2.39 -0.02 1.61 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.44 341.46 6.05 -70.39 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.99 Total: 16.18 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.82 Total: -16.12 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.74 Total: -85.39 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.05 Total: -32.81 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.44 6.05 -70.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616035082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.056 kcal (2) G-P(sol) polarization free energy of solvation -76.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds