Wall clock time and date at job start Mon Mar 30 2020 07:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47116 * 120.00052 * 2 1 4 4 C 1.50703 * 119.99985 * 5.50025 * 3 2 1 5 5 C 1.32872 * 120.00194 * 185.50459 * 3 2 1 6 6 C 1.50702 * 119.99771 * 6.24886 * 5 3 2 7 7 C 1.50708 * 109.46909 * 126.12598 * 6 5 3 8 8 O 1.21285 * 120.00043 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99812 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99698 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47596 * 89.99514 * 10 9 7 12 12 H 1.07999 * 120.00053 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99871 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99484 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00117 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47108 * 89.99838 * 15 13 11 17 17 H 1.48501 * 109.46868 * 209.99631 * 15 13 11 18 18 H 1.48503 * 109.47099 * 329.99560 * 15 13 11 19 19 C 1.46496 * 120.00213 * 359.97438 * 9 7 6 20 20 C 1.53000 * 109.47353 * 90.00588 * 19 9 7 21 21 C 1.53001 * 117.49787 * 243.62558 * 20 19 9 22 22 C 1.52992 * 117.50303 * 175.00111 * 20 19 9 23 23 H 1.07998 * 119.99943 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.99820 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99943 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46912 * 269.99847 * 4 3 2 27 27 H 1.08999 * 109.47082 * 30.00270 * 4 3 2 28 28 H 1.08998 * 109.46871 * 150.00563 * 4 3 2 29 29 H 1.07999 * 120.00365 * 186.25200 * 5 3 2 30 30 H 1.09000 * 109.47193 * 246.12415 * 6 5 3 31 31 H 1.09000 * 109.47180 * 6.12948 * 6 5 3 32 32 H 1.09007 * 109.46628 * 209.99548 * 10 9 7 33 33 H 1.08996 * 109.46848 * 329.98778 * 10 9 7 34 34 H 0.97004 * 119.99391 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47459 * 210.00567 * 19 9 7 36 36 H 1.09005 * 109.47068 * 330.00480 * 19 9 7 37 37 H 1.09000 * 115.54402 * 29.32603 * 20 19 9 38 38 H 1.08998 * 117.49986 * 359.97438 * 21 20 19 39 39 H 1.09006 * 117.49848 * 145.01321 * 21 20 19 40 40 H 1.08997 * 117.49873 * 214.97606 * 22 20 19 41 41 H 1.09001 * 117.49725 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5762 0.1251 5 6 3.3884 1.2767 -0.1104 6 6 4.1249 -0.0108 -0.3766 7 6 5.0035 0.1547 -1.5899 8 8 5.0286 1.2137 -2.1805 9 7 5.7604 -0.8745 -2.0192 10 6 6.6148 -0.7135 -3.1983 11 6 7.9734 -0.2214 -2.7707 12 1 8.1798 -0.0457 -1.7253 13 6 8.9531 0.0046 -3.7143 14 7 10.1387 0.4345 -3.3412 15 14 8.5960 -0.2986 -5.5226 16 1 8.0653 0.9446 -6.1375 17 1 9.8481 -0.6975 -6.2143 18 1 7.5908 -1.3838 -5.6535 19 6 5.7295 -2.1539 -1.3062 20 6 4.6365 -3.0435 -1.9017 21 6 3.4672 -3.4298 -0.9936 22 6 4.5212 -4.4732 -1.3694 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8687 -0.9353 -0.0004 26 1 1.0503 2.9393 -0.8677 27 1 0.4093 2.4195 0.7094 28 1 1.9473 3.3115 0.6240 29 1 3.9369 2.2016 -0.0093 30 1 4.7412 -0.2621 0.4866 31 1 3.4060 -0.8104 -0.5550 32 1 6.7188 -1.6728 -3.7053 33 1 6.1637 0.0096 -3.8778 34 1 10.8278 0.5938 -4.0050 35 1 6.6954 -2.6490 -1.4061 36 1 5.5194 -1.9769 -0.2513 37 1 4.4215 -2.8807 -2.9578 38 1 3.4770 -3.0504 0.0282 39 1 2.4826 -3.5210 -1.4522 40 1 4.2299 -5.2510 -2.0753 41 1 5.2244 -4.7802 -0.5952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616035084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:37 Heat of formation + Delta-G solvation = 20.733061 kcal Electronic energy + Delta-G solvation = -19961.601084 eV Core-core repulsion = 17036.252509 eV Total energy + Delta-G solvation = -2925.348575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.41785 -37.33981 -36.75227 -34.48865 -32.53379 -31.81308 -30.00817 -28.38812 -26.43419 -25.13556 -22.50106 -22.26529 -21.55005 -20.76077 -18.53057 -17.47319 -16.90407 -16.71991 -15.73653 -15.52976 -14.99974 -14.61881 -14.39770 -13.97868 -13.54985 -13.36176 -12.87286 -12.57667 -12.52998 -12.34093 -12.21589 -11.93510 -11.54137 -11.51831 -11.48481 -11.38630 -10.91413 -10.59959 -10.53415 -10.40368 -10.32644 -10.11574 -9.89652 -9.51964 -9.01205 -8.57652 -8.11686 -7.71992 -6.07725 -4.06162 1.41254 3.05984 3.30029 3.35987 3.37571 3.38189 3.72823 3.97169 4.40734 4.74663 4.81135 4.90148 4.96056 4.96686 5.15074 5.23662 5.29717 5.40802 5.48275 5.56265 5.60807 5.65893 5.66410 5.73518 5.78619 5.83688 5.90910 6.02349 6.07630 6.10547 6.36450 6.43486 6.45928 6.72042 6.80180 6.96882 7.01852 7.36306 7.62708 8.27174 8.48355 8.94363 9.01849 9.52933 11.05721 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.005737 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.064348 B = 4879.705201 C = 5916.769531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.128 4.128 4 C -0.111 4.111 5 C -0.099 4.099 6 C -0.123 4.123 7 C 0.514 3.486 8 O -0.538 6.538 9 N -0.592 5.592 10 C 0.216 3.784 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.876 3.124 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.142 3.858 20 C -0.167 4.167 21 C -0.187 4.187 22 C -0.175 4.175 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.993 -6.502 7.580 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.132 4.132 3 C -0.128 4.128 4 C -0.167 4.167 5 C -0.118 4.118 6 C -0.163 4.163 7 C 0.301 3.699 8 O -0.415 6.415 9 N -0.322 5.322 10 C 0.095 3.905 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.191 1.191 19 C 0.017 3.983 20 C -0.187 4.187 21 C -0.224 4.224 22 C -0.212 4.212 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.134 0.866 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.773 -5.874 7.172 19.164 hybrid contribution 0.071 -0.266 -0.987 1.025 sum -16.702 -6.140 6.185 18.839 Atomic orbital electron populations 1.24331 0.95720 1.01710 1.01525 1.21994 0.95263 0.96474 0.99431 1.20489 0.93829 0.94205 1.04275 1.20735 0.99759 0.94309 1.01931 1.22951 0.93994 0.98238 0.96603 1.20969 0.99252 0.98069 0.97988 1.20204 0.80226 0.83961 0.85471 1.90667 1.66361 1.26517 1.57949 1.47860 1.42924 1.10691 1.30771 1.19651 0.90172 0.96955 0.83688 1.21331 0.94306 1.44804 0.96164 0.90768 1.24851 0.94862 0.94479 0.98788 1.69902 1.03729 1.45790 1.34236 0.86857 0.77902 0.79303 0.85674 1.19935 1.21082 1.19074 1.21045 0.98234 0.84130 0.94841 1.22949 0.99064 0.96836 0.99824 1.23070 0.94479 1.04504 1.00314 1.22900 1.02389 0.92223 1.03717 0.88295 0.88447 0.86567 0.91524 0.92104 0.91754 0.86246 0.88524 0.88202 0.95249 0.94645 0.92591 0.89232 0.91104 0.87524 0.88821 0.89126 0.88983 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 14.07 28.88 0.41 -1.50 16 2 C -0.11 -1.30 9.20 -37.83 -0.35 -1.64 16 3 C -0.13 -1.65 5.98 -102.87 -0.61 -2.27 16 4 C -0.11 -1.21 9.38 36.01 0.34 -0.87 16 5 C -0.10 -1.47 8.43 -36.16 -0.30 -1.78 16 6 C -0.12 -1.84 4.48 -29.03 -0.13 -1.97 16 7 C 0.51 10.57 7.67 -10.98 -0.08 10.48 16 8 O -0.54 -13.46 15.61 5.55 0.09 -13.38 16 9 N -0.59 -12.10 2.46 -175.06 -0.43 -12.53 16 10 C 0.22 5.30 4.23 -5.20 -0.02 5.28 16 11 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 12 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 15 Si 0.88 21.75 27.47 -169.99 -4.67 17.09 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 C 0.14 2.21 5.49 -4.04 -0.02 2.19 16 20 C -0.17 -2.19 5.95 -90.62 -0.54 -2.72 16 21 C -0.19 -1.91 9.18 -26.73 -0.25 -2.15 16 22 C -0.17 -1.82 10.25 -26.74 -0.27 -2.10 16 23 H 0.10 0.89 6.31 -52.49 -0.33 0.56 16 24 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 25 H 0.12 1.22 6.00 -52.49 -0.31 0.91 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 28 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 29 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 30 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 31 H 0.10 1.28 4.11 -51.93 -0.21 1.07 16 32 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 36 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 37 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.09 0.85 7.87 -51.93 -0.41 0.45 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -33.55 337.78 -7.86 -41.41 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.43 Total: 1.94 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -2.28 Total: -12.58 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.34 Total: -39.57 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.55 -7.86 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616035084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.142 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds