Wall clock time and date at job start Mon Mar 30 2020 07:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47116 * 120.00052 * 2 1 4 4 C 1.50703 * 119.99985 * 5.50025 * 3 2 1 5 5 C 1.32872 * 120.00194 * 185.50459 * 3 2 1 6 6 C 1.50702 * 119.99771 * 6.24886 * 5 3 2 7 7 C 1.50708 * 109.46909 * 126.12598 * 6 5 3 8 8 O 1.21285 * 120.00043 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99812 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99698 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47596 * 89.99514 * 10 9 7 12 12 H 1.07999 * 120.00053 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99871 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99484 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00117 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47108 * 89.99838 * 15 13 11 17 17 H 1.48501 * 109.46868 * 209.99631 * 15 13 11 18 18 H 1.48503 * 109.47099 * 329.99560 * 15 13 11 19 19 C 1.46496 * 120.00213 * 359.97438 * 9 7 6 20 20 C 1.53000 * 109.47353 * 90.00588 * 19 9 7 21 21 C 1.53001 * 117.49787 * 243.62558 * 20 19 9 22 22 C 1.52992 * 117.50303 * 175.00111 * 20 19 9 23 23 H 1.07998 * 119.99943 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.99820 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99943 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46912 * 269.99847 * 4 3 2 27 27 H 1.08999 * 109.47082 * 30.00270 * 4 3 2 28 28 H 1.08998 * 109.46871 * 150.00563 * 4 3 2 29 29 H 1.07999 * 120.00365 * 186.25200 * 5 3 2 30 30 H 1.09000 * 109.47193 * 246.12415 * 6 5 3 31 31 H 1.09000 * 109.47180 * 6.12948 * 6 5 3 32 32 H 1.09007 * 109.46628 * 209.99548 * 10 9 7 33 33 H 1.08996 * 109.46848 * 329.98778 * 10 9 7 34 34 H 0.97004 * 119.99391 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47459 * 210.00567 * 19 9 7 36 36 H 1.09005 * 109.47068 * 330.00480 * 19 9 7 37 37 H 1.09000 * 115.54402 * 29.32603 * 20 19 9 38 38 H 1.08998 * 117.49986 * 359.97438 * 21 20 19 39 39 H 1.09006 * 117.49848 * 145.01321 * 21 20 19 40 40 H 1.08997 * 117.49873 * 214.97606 * 22 20 19 41 41 H 1.09001 * 117.49725 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5762 0.1251 5 6 3.3884 1.2767 -0.1104 6 6 4.1249 -0.0108 -0.3766 7 6 5.0035 0.1547 -1.5899 8 8 5.0286 1.2137 -2.1805 9 7 5.7604 -0.8745 -2.0192 10 6 6.6148 -0.7135 -3.1983 11 6 7.9734 -0.2214 -2.7707 12 1 8.1798 -0.0457 -1.7253 13 6 8.9531 0.0046 -3.7143 14 7 10.1387 0.4345 -3.3412 15 14 8.5960 -0.2986 -5.5226 16 1 8.0653 0.9446 -6.1375 17 1 9.8481 -0.6975 -6.2143 18 1 7.5908 -1.3838 -5.6535 19 6 5.7295 -2.1539 -1.3062 20 6 4.6365 -3.0435 -1.9017 21 6 3.4672 -3.4298 -0.9936 22 6 4.5212 -4.4732 -1.3694 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8687 -0.9353 -0.0004 26 1 1.0503 2.9393 -0.8677 27 1 0.4093 2.4195 0.7094 28 1 1.9473 3.3115 0.6240 29 1 3.9369 2.2016 -0.0093 30 1 4.7412 -0.2621 0.4866 31 1 3.4060 -0.8104 -0.5550 32 1 6.7188 -1.6728 -3.7053 33 1 6.1637 0.0096 -3.8778 34 1 10.8278 0.5938 -4.0050 35 1 6.6954 -2.6490 -1.4061 36 1 5.5194 -1.9769 -0.2513 37 1 4.4215 -2.8807 -2.9578 38 1 3.4770 -3.0504 0.0282 39 1 2.4826 -3.5210 -1.4522 40 1 4.2299 -5.2510 -2.0753 41 1 5.2244 -4.7802 -0.5952 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616035084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:37 Heat of formation + Delta-G solvation = 0.824272 kcal Electronic energy + Delta-G solvation = -19962.464394 eV Core-core repulsion = 17036.252509 eV Total energy + Delta-G solvation = -2926.211885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93282 -38.41727 -37.81589 -36.13189 -34.61266 -32.95260 -31.17068 -30.06859 -27.75623 -26.47371 -24.11875 -23.21310 -22.57726 -21.85112 -20.01596 -19.10070 -18.44302 -18.11930 -17.22255 -16.83354 -16.21693 -16.01478 -15.77753 -15.18543 -14.88452 -14.57096 -14.46824 -14.15764 -13.86686 -13.58384 -13.43854 -13.12758 -13.03299 -12.86614 -12.56237 -12.49276 -12.38751 -12.24878 -12.03768 -11.77888 -11.49700 -11.29919 -11.22908 -10.92029 -10.84460 -10.58621 -9.43025 -9.09727 -8.35694 -6.40427 0.47095 1.30172 1.34328 1.42776 1.79929 2.08682 2.29105 2.39591 2.97972 2.98891 3.72253 3.77468 3.91135 4.02774 4.05477 4.17493 4.23445 4.32804 4.43776 4.56823 4.69809 4.70368 4.73928 4.76945 4.81285 4.86766 4.90628 4.95730 4.97482 5.09797 5.15587 5.33170 5.35644 5.44518 5.53242 5.60780 5.62766 5.85484 6.07437 6.22776 6.60481 6.70193 7.20255 7.42460 8.81333 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.005737 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.064348 B = 4879.705201 C = 5916.769531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.105 4.105 4 C -0.116 4.116 5 C -0.146 4.146 6 C -0.102 4.102 7 C 0.502 3.498 8 O -0.595 6.595 9 N -0.597 5.597 10 C 0.226 3.774 11 C -0.535 4.535 12 H 0.029 0.971 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.946 3.054 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.240 1.240 19 C 0.139 3.861 20 C -0.192 4.192 21 C -0.168 4.168 22 C -0.162 4.162 23 H 0.106 0.894 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.269 0.731 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.210 -8.770 7.824 23.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.105 4.105 4 C -0.173 4.173 5 C -0.165 4.165 6 C -0.141 4.141 7 C 0.292 3.708 8 O -0.476 6.476 9 N -0.327 5.327 10 C 0.104 3.896 11 C -0.574 4.574 12 H 0.048 0.952 13 C -0.186 4.186 14 N -0.585 5.585 15 Si 0.769 3.231 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.164 1.164 19 C 0.017 3.983 20 C -0.212 4.212 21 C -0.204 4.204 22 C -0.199 4.199 23 H 0.125 0.875 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.010 -8.194 7.455 22.871 hybrid contribution 0.962 0.472 -0.955 1.435 sum -19.048 -7.722 6.500 21.557 Atomic orbital electron populations 1.24665 0.95125 1.03263 0.97308 1.22067 0.96043 0.95903 1.02453 1.20845 0.93251 0.95922 1.00496 1.20837 1.00552 0.93529 1.02343 1.22769 0.94935 0.97436 1.01332 1.20861 0.98737 0.99157 0.95336 1.21295 0.80200 0.82867 0.86448 1.90622 1.68314 1.28693 1.60000 1.47956 1.41991 1.12779 1.29999 1.19275 0.88401 0.96670 0.85293 1.21554 0.96670 1.44932 0.94246 0.95233 1.25825 0.94436 0.94046 1.04244 1.70049 1.04987 1.47202 1.36216 0.85738 0.78760 0.79741 0.78863 1.20270 1.19733 1.16351 1.21272 0.98838 0.82221 0.95992 1.22657 1.00427 0.98710 0.99381 1.23215 0.94106 1.02798 1.00329 1.23012 1.02338 0.90965 1.03584 0.87549 0.86125 0.85596 0.91525 0.89766 0.91769 0.88605 0.86906 0.85514 0.93563 0.96703 0.92238 0.90807 0.88528 0.89339 0.87139 0.87838 0.87938 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 14.07 66.64 0.94 -1.57 16 2 C -0.15 -2.86 9.20 23.43 0.22 -2.64 16 3 C -0.11 -2.56 5.98 -18.71 -0.11 -2.67 16 4 C -0.12 -2.36 9.38 71.24 0.67 -1.69 16 5 C -0.15 -4.39 8.43 24.51 0.21 -4.18 16 6 C -0.10 -3.00 4.48 29.10 0.13 -2.87 16 7 C 0.50 21.27 7.67 87.66 0.67 21.94 16 8 O -0.60 -31.43 15.61 -3.05 -0.05 -31.48 16 9 N -0.60 -25.00 2.46 -826.16 -2.03 -27.03 16 10 C 0.23 11.41 4.23 85.63 0.36 11.77 16 11 C -0.54 -32.29 9.94 25.60 0.25 -32.03 16 12 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 13 C 0.01 0.76 5.47 84.66 0.46 1.22 16 14 N -0.94 -60.62 13.96 21.45 0.30 -60.32 16 15 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 19 C 0.14 4.26 5.49 86.38 0.47 4.73 16 20 C -0.19 -4.65 5.95 -10.80 -0.06 -4.72 16 21 C -0.17 -2.77 9.18 30.59 0.28 -2.49 16 22 C -0.16 -2.84 10.25 30.59 0.31 -2.53 16 23 H 0.11 1.44 6.31 -2.91 -0.02 1.42 16 24 H 0.12 1.30 8.06 -2.91 -0.02 1.27 16 25 H 0.13 2.14 6.00 -2.91 -0.02 2.13 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.29 6.67 -2.39 -0.02 1.28 16 28 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 29 H 0.10 3.24 8.04 -2.91 -0.02 3.22 16 30 H 0.11 2.87 7.40 -2.39 -0.02 2.85 16 31 H 0.13 2.96 4.11 -2.39 -0.01 2.95 16 32 H 0.05 2.17 7.13 -2.38 -0.02 2.15 16 33 H 0.01 0.81 6.85 -2.39 -0.02 0.80 16 34 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 35 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 36 H 0.10 2.39 6.17 -2.38 -0.01 2.38 16 37 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.11 1.48 7.87 -2.39 -0.02 1.46 16 39 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -77.94 337.78 5.85 -72.09 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.94 Total: 17.05 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.80 Total: -17.73 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -1.73 Total: -87.34 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.05 Total: -31.48 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -77.94 5.85 -72.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616035084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.915 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds