Wall clock time and date at job start Mon Mar 30 2020 07:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47121 * 120.00060 * 2 1 4 4 C 1.50699 * 119.99985 * 359.97438 * 3 2 1 5 5 C 1.32864 * 119.99779 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00046 * 186.43183 * 5 3 2 7 7 C 1.50701 * 109.47480 * 125.63517 * 6 5 3 8 8 O 1.21293 * 120.00069 * 359.97438 * 7 6 5 9 9 N 1.34785 * 120.00235 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99468 * 359.97438 * 9 7 6 11 11 H 1.08007 * 119.99639 * 231.48181 * 10 9 7 12 12 C 1.38948 * 120.00364 * 51.48672 * 10 9 7 13 13 N 1.31415 * 120.00102 * 26.47900 * 12 10 9 14 14 Si 1.86799 * 120.00181 * 206.47398 * 12 10 9 15 15 H 1.48498 * 109.47166 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46992 * 119.99883 * 14 12 10 17 17 H 1.48499 * 109.47476 * 240.00126 * 14 12 10 18 18 C 1.46497 * 120.00102 * 180.02562 * 9 7 6 19 19 C 1.54262 * 110.02963 * 234.48849 * 18 9 7 20 20 C 1.54966 * 104.16000 * 217.13354 * 19 18 9 21 21 C 1.54893 * 102.77333 * 37.89407 * 20 19 18 22 22 C 1.53869 * 110.03043 * 117.27408 * 18 9 7 23 23 H 1.08002 * 119.99574 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.00045 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00061 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47190 * 210.58465 * 4 3 2 27 27 H 1.08999 * 109.46898 * 330.58599 * 4 3 2 28 28 H 1.08996 * 109.47347 * 90.58139 * 4 3 2 29 29 H 1.08000 * 120.00382 * 6.15140 * 5 3 2 30 30 H 1.08993 * 109.47477 * 245.63749 * 6 5 3 31 31 H 1.09010 * 109.47091 * 5.63400 * 6 5 3 32 32 H 0.96992 * 120.00245 * 184.82793 * 13 12 10 33 33 H 1.09001 * 110.01532 * 355.88280 * 18 9 7 34 34 H 1.08994 * 110.49376 * 335.78493 * 19 18 9 35 35 H 1.09004 * 110.48233 * 98.42763 * 19 18 9 36 36 H 1.09001 * 110.72202 * 279.57704 * 20 19 18 37 37 H 1.09004 * 110.92245 * 156.29792 * 20 19 18 38 38 H 1.08997 * 110.48130 * 203.40631 * 21 20 19 39 39 H 1.08990 * 110.59949 * 80.81513 * 21 20 19 40 40 H 1.08999 * 110.03036 * 238.56684 * 22 18 9 41 41 H 1.09003 * 110.03739 * 359.95082 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1465 2.5709 0.1467 7 6 5.1141 2.4628 1.2970 8 8 5.1846 1.4340 1.9356 9 7 5.9005 3.5097 1.6168 10 6 5.8204 4.6727 0.8952 11 1 6.7165 5.1202 0.4910 12 6 4.5866 5.2758 0.6840 13 7 3.6078 5.0870 1.5404 14 14 4.3191 6.3549 -0.8170 15 1 5.5679 6.4057 -1.6190 16 1 3.2229 5.7896 -1.6442 17 1 3.9537 7.7269 -0.3817 18 6 6.8416 3.4044 2.7346 19 6 6.6053 4.5553 3.7343 20 6 8.0277 4.9354 4.2178 21 6 8.8770 4.7909 2.9305 22 6 8.2853 3.5538 2.2239 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8687 -0.9353 0.0004 26 1 1.8956 3.3361 -0.5234 27 1 0.3541 2.4461 -0.5056 28 1 1.1378 2.8993 1.0268 29 1 3.9330 0.3441 -0.0993 30 1 4.6956 2.7776 -0.7718 31 1 3.4424 3.3805 0.3391 32 1 2.7270 5.4498 1.3578 33 1 6.7201 2.4439 3.2353 34 1 6.1328 5.4020 3.2367 35 1 5.9955 4.2145 4.5711 36 1 8.3713 4.2437 4.9870 37 1 8.0530 5.9617 4.5841 38 1 9.9242 4.6224 3.1815 39 1 8.7738 5.6751 2.3017 40 1 8.8648 2.6661 2.4776 41 1 8.2860 3.7037 1.1442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616175058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:06 Heat of formation + Delta-G solvation = -11.951411 kcal Electronic energy + Delta-G solvation = -20669.833683 eV Core-core repulsion = 17743.067803 eV Total energy + Delta-G solvation = -2926.765880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.00721 -37.01908 -35.97113 -34.14593 -31.89928 -31.26101 -28.27586 -27.93803 -26.97573 -25.73092 -24.54052 -21.01531 -19.99231 -19.30503 -19.24650 -17.24900 -16.61008 -15.75582 -15.41528 -15.15893 -14.67952 -14.28147 -13.79375 -13.53860 -13.27471 -12.86678 -12.63562 -12.37075 -12.26442 -11.81700 -11.58344 -11.22254 -11.12435 -11.07355 -10.84404 -10.62844 -10.56122 -10.48816 -10.36362 -10.34137 -10.18117 -10.01188 -9.98317 -9.64186 -8.73358 -8.28911 -7.62404 -7.31445 -6.43671 -4.21462 1.86486 3.06993 3.20065 3.22892 3.53197 4.04768 4.15119 4.81587 4.86995 5.27529 5.35600 5.37590 5.38748 5.58128 5.74123 5.95047 6.03100 6.09171 6.13702 6.23036 6.28012 6.32300 6.34182 6.39851 6.49730 6.53848 6.56417 6.58092 6.63475 6.73981 6.75679 6.88012 6.94123 7.03663 7.12958 7.31131 7.37309 7.45923 7.54307 7.99032 8.64095 8.90207 9.61068 10.04727 10.56724 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.007078 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.618225 B = 3954.857291 C = 4916.061459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.111 4.111 5 C -0.088 4.088 6 C -0.121 4.121 7 C 0.518 3.482 8 O -0.612 6.612 9 N -0.448 5.448 10 C -0.334 4.334 11 H 0.082 0.918 12 C 0.053 3.947 13 N -0.842 5.842 14 Si 0.888 3.112 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.281 1.281 18 C 0.132 3.868 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.127 4.127 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -1.086 -1.989 2.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.113 4.113 3 C -0.142 4.142 4 C -0.167 4.167 5 C -0.106 4.106 6 C -0.160 4.160 7 C 0.308 3.692 8 O -0.498 6.498 9 N -0.168 5.168 10 C -0.462 4.462 11 H 0.100 0.900 12 C -0.154 4.154 13 N -0.477 5.477 14 Si 0.713 3.287 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.206 1.206 18 C 0.027 3.973 19 C -0.158 4.158 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.166 4.166 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.422 -1.466 -1.585 2.200 hybrid contribution -0.274 0.616 -0.650 0.936 sum 0.148 -0.850 -2.235 2.396 Atomic orbital electron populations 1.24226 0.95723 1.01376 1.03712 1.21878 0.95164 0.96171 0.98069 1.20421 0.94055 0.93846 1.05891 1.20758 0.98982 0.94684 1.02293 1.23164 0.93924 0.98788 0.94737 1.21058 0.99417 0.97269 0.98257 1.20123 0.81682 0.82266 0.85101 1.90491 1.72000 1.30956 1.56343 1.43447 1.35113 1.11355 1.26836 1.19148 0.94242 1.02540 1.30251 0.90001 1.25470 0.97139 0.95854 0.96924 1.70181 1.02967 1.43636 1.30907 0.86509 0.79167 0.80136 0.82889 1.18887 1.19994 1.20648 1.21569 0.88677 0.98417 0.88589 1.22580 0.95165 1.00246 0.97797 1.22458 0.96655 1.00100 0.96890 1.22253 0.97648 0.98648 0.96842 1.22419 0.96305 0.96840 1.01016 0.88304 0.88846 0.87399 0.91585 0.92715 0.91469 0.87681 0.89680 0.85455 0.92064 0.90544 0.88981 0.93138 0.92600 0.92438 0.93014 0.91725 0.92987 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.00 14.11 28.88 0.41 -2.59 16 2 C -0.09 -1.53 9.83 -37.83 -0.37 -1.91 16 3 C -0.14 -2.66 5.98 -102.87 -0.62 -3.28 16 4 C -0.11 -1.98 8.57 36.01 0.31 -1.67 16 5 C -0.09 -1.80 8.45 -36.16 -0.31 -2.11 16 6 C -0.12 -2.74 4.13 -29.04 -0.12 -2.86 16 7 C 0.52 13.19 7.21 -10.98 -0.08 13.11 16 8 O -0.61 -16.90 15.39 5.55 0.09 -16.81 16 9 N -0.45 -10.90 2.36 -106.55 -0.25 -11.15 16 10 C -0.33 -8.01 6.82 -14.93 -0.10 -8.12 16 11 H 0.08 1.94 7.47 -52.48 -0.39 1.55 16 12 C 0.05 1.26 3.29 -17.47 -0.06 1.21 16 13 N -0.84 -20.95 11.73 55.50 0.65 -20.30 16 14 Si 0.89 18.34 29.63 -169.99 -5.04 13.30 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 18 C 0.13 2.90 3.29 -66.82 -0.22 2.68 16 19 C -0.12 -2.45 6.41 -25.03 -0.16 -2.61 16 20 C -0.12 -2.02 6.91 -24.69 -0.17 -2.19 16 21 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 22 C -0.13 -2.38 6.28 -25.62 -0.16 -2.54 16 23 H 0.10 1.35 6.15 -52.49 -0.32 1.02 16 24 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.07 1.23 6.46 -51.93 -0.34 0.90 16 27 H 0.05 0.83 6.41 -51.93 -0.33 0.50 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.11 2.10 8.05 -52.49 -0.42 1.68 16 30 H 0.09 1.83 8.10 -51.93 -0.42 1.41 16 31 H 0.13 2.95 2.57 -51.92 -0.13 2.81 16 32 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 33 H 0.08 1.81 6.95 -51.93 -0.36 1.45 16 34 H 0.09 2.12 6.90 -51.93 -0.36 1.77 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.37 7.16 -51.93 -0.37 1.00 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -27.14 326.16 -7.85 -34.98 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.39 Total: 10.00 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.82 Total: -14.93 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.40 Total: -31.45 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.09 Total: -16.81 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.04 Total: 13.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.14 -7.85 -34.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616175058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.029 kcal (2) G-P(sol) polarization free energy of solvation -27.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds