Wall clock time and date at job start Mon Mar 30 2020 07:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47121 * 120.00060 * 2 1 4 4 C 1.50699 * 119.99985 * 359.97438 * 3 2 1 5 5 C 1.32864 * 119.99779 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00046 * 186.43183 * 5 3 2 7 7 C 1.50701 * 109.47480 * 125.63517 * 6 5 3 8 8 O 1.21293 * 120.00069 * 359.97438 * 7 6 5 9 9 N 1.34785 * 120.00235 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99468 * 359.97438 * 9 7 6 11 11 H 1.08007 * 119.99639 * 231.48181 * 10 9 7 12 12 C 1.38948 * 120.00364 * 51.48672 * 10 9 7 13 13 N 1.31415 * 120.00102 * 26.47900 * 12 10 9 14 14 Si 1.86799 * 120.00181 * 206.47398 * 12 10 9 15 15 H 1.48498 * 109.47166 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46992 * 119.99883 * 14 12 10 17 17 H 1.48499 * 109.47476 * 240.00126 * 14 12 10 18 18 C 1.46497 * 120.00102 * 180.02562 * 9 7 6 19 19 C 1.54262 * 110.02963 * 234.48849 * 18 9 7 20 20 C 1.54966 * 104.16000 * 217.13354 * 19 18 9 21 21 C 1.54893 * 102.77333 * 37.89407 * 20 19 18 22 22 C 1.53869 * 110.03043 * 117.27408 * 18 9 7 23 23 H 1.08002 * 119.99574 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.00045 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.00061 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47190 * 210.58465 * 4 3 2 27 27 H 1.08999 * 109.46898 * 330.58599 * 4 3 2 28 28 H 1.08996 * 109.47347 * 90.58139 * 4 3 2 29 29 H 1.08000 * 120.00382 * 6.15140 * 5 3 2 30 30 H 1.08993 * 109.47477 * 245.63749 * 6 5 3 31 31 H 1.09010 * 109.47091 * 5.63400 * 6 5 3 32 32 H 0.96992 * 120.00245 * 184.82793 * 13 12 10 33 33 H 1.09001 * 110.01532 * 355.88280 * 18 9 7 34 34 H 1.08994 * 110.49376 * 335.78493 * 19 18 9 35 35 H 1.09004 * 110.48233 * 98.42763 * 19 18 9 36 36 H 1.09001 * 110.72202 * 279.57704 * 20 19 18 37 37 H 1.09004 * 110.92245 * 156.29792 * 20 19 18 38 38 H 1.08997 * 110.48130 * 203.40631 * 21 20 19 39 39 H 1.08990 * 110.59949 * 80.81513 * 21 20 19 40 40 H 1.08999 * 110.03036 * 238.56684 * 22 18 9 41 41 H 1.09003 * 110.03739 * 359.95082 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3109 2.5792 -0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1465 2.5709 0.1467 7 6 5.1141 2.4628 1.2970 8 8 5.1846 1.4340 1.9356 9 7 5.9005 3.5097 1.6168 10 6 5.8204 4.6727 0.8952 11 1 6.7165 5.1202 0.4910 12 6 4.5866 5.2758 0.6840 13 7 3.6078 5.0870 1.5404 14 14 4.3191 6.3549 -0.8170 15 1 5.5679 6.4057 -1.6190 16 1 3.2229 5.7896 -1.6442 17 1 3.9537 7.7269 -0.3817 18 6 6.8416 3.4044 2.7346 19 6 6.6053 4.5553 3.7343 20 6 8.0277 4.9354 4.2178 21 6 8.8770 4.7909 2.9305 22 6 8.2853 3.5538 2.2239 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8687 -0.9353 0.0004 26 1 1.8956 3.3361 -0.5234 27 1 0.3541 2.4461 -0.5056 28 1 1.1378 2.8993 1.0268 29 1 3.9330 0.3441 -0.0993 30 1 4.6956 2.7776 -0.7718 31 1 3.4424 3.3805 0.3391 32 1 2.7270 5.4498 1.3578 33 1 6.7201 2.4439 3.2353 34 1 6.1328 5.4020 3.2367 35 1 5.9955 4.2145 4.5711 36 1 8.3713 4.2437 4.9870 37 1 8.0530 5.9617 4.5841 38 1 9.9242 4.6224 3.1815 39 1 8.7738 5.6751 2.3017 40 1 8.8648 2.6661 2.4776 41 1 8.2860 3.7037 1.1442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616175058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:05 Heat of formation + Delta-G solvation = -24.509256 kcal Electronic energy + Delta-G solvation = -20670.378232 eV Core-core repulsion = 17743.067803 eV Total energy + Delta-G solvation = -2927.310429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83628 -38.61648 -37.51747 -35.99606 -33.49764 -32.93861 -29.82435 -29.46871 -28.54615 -27.36168 -26.31654 -22.54002 -21.43742 -21.07373 -20.81874 -18.71191 -18.43106 -17.45631 -17.10546 -16.87814 -16.24796 -15.93985 -15.30573 -15.23091 -14.79722 -14.42142 -14.16275 -14.05196 -13.85149 -13.35988 -13.31638 -12.93709 -12.77037 -12.60628 -12.36542 -12.27452 -12.15297 -12.01815 -11.89228 -11.82963 -11.68334 -11.38971 -11.34898 -11.34133 -10.60959 -10.20700 -9.25663 -9.01851 -8.29058 -6.12788 0.50308 1.41271 1.49935 1.59422 2.11140 2.21505 2.34402 2.97337 3.11442 3.86541 3.89158 3.93478 4.03543 4.18067 4.35736 4.45477 4.58630 4.61042 4.68845 4.70202 4.77831 4.81804 4.82871 4.91455 4.91653 4.93412 5.07094 5.08263 5.15847 5.23855 5.27624 5.41721 5.48607 5.52165 5.56776 5.64846 5.68191 5.87470 6.10320 6.13386 6.73448 7.02611 7.68380 8.14378 8.72789 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.007078 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.618225 B = 3954.857291 C = 4916.061459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.134 4.134 3 C -0.124 4.124 4 C -0.110 4.110 5 C -0.129 4.129 6 C -0.112 4.112 7 C 0.496 3.504 8 O -0.646 6.646 9 N -0.450 5.450 10 C -0.346 4.346 11 H 0.084 0.916 12 C 0.027 3.973 13 N -0.870 5.870 14 Si 0.945 3.055 15 H -0.259 1.259 16 H -0.268 1.268 17 H -0.281 1.281 18 C 0.117 3.883 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.107 4.107 22 C -0.121 4.121 23 H 0.106 0.894 24 H 0.124 0.876 25 H 0.115 0.885 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.272 0.728 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -0.527 -2.586 2.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.124 4.124 4 C -0.166 4.166 5 C -0.148 4.148 6 C -0.151 4.151 7 C 0.288 3.712 8 O -0.535 6.535 9 N -0.168 5.168 10 C -0.474 4.474 11 H 0.102 0.898 12 C -0.178 4.178 13 N -0.506 5.506 14 Si 0.769 3.231 15 H -0.182 1.182 16 H -0.193 1.193 17 H -0.207 1.207 18 C 0.013 3.987 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.160 4.160 23 H 0.124 0.876 24 H 0.142 0.858 25 H 0.133 0.867 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.015 -0.885 -2.184 2.356 hybrid contribution -0.289 0.409 -0.408 0.646 sum -0.274 -0.477 -2.592 2.650 Atomic orbital electron populations 1.24591 0.94805 1.03200 0.98521 1.21911 0.96143 0.95271 1.01826 1.20773 0.93676 0.95492 1.02435 1.20766 1.00221 0.93908 1.01692 1.22995 0.94758 0.97732 0.99294 1.20942 0.98765 0.98376 0.97053 1.20758 0.82500 0.82100 0.85888 1.90438 1.73254 1.32128 1.57718 1.43658 1.34884 1.11245 1.27046 1.19298 0.94723 1.02481 1.30850 0.89840 1.26078 0.96478 0.96680 0.98603 1.70243 1.03431 1.44632 1.32257 0.85627 0.79346 0.78292 0.79870 1.18219 1.19331 1.20682 1.21815 0.90469 0.97732 0.88634 1.22471 0.97778 0.98417 0.96746 1.22424 0.93361 1.01652 0.97477 1.22225 0.99245 0.96953 0.96067 1.22352 0.94235 0.99019 1.00371 0.87591 0.85812 0.86667 0.92772 0.89550 0.92696 0.88117 0.89619 0.85897 0.91772 0.93113 0.91745 0.94455 0.90782 0.90508 0.89619 0.91983 0.91641 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 14.11 66.64 0.94 -3.35 16 2 C -0.13 -4.12 9.83 23.43 0.23 -3.89 16 3 C -0.12 -4.63 5.98 -18.71 -0.11 -4.74 16 4 C -0.11 -3.82 8.57 71.24 0.61 -3.21 16 5 C -0.13 -5.52 8.45 24.51 0.21 -5.31 16 6 C -0.11 -5.29 4.13 29.10 0.12 -5.17 16 7 C 0.50 26.50 7.21 87.66 0.63 27.13 16 8 O -0.65 -37.68 15.39 -3.07 -0.05 -37.73 16 9 N -0.45 -22.74 2.36 -609.38 -1.44 -24.18 16 10 C -0.35 -16.95 6.82 84.04 0.57 -16.38 16 11 H 0.08 4.00 7.47 -2.91 -0.02 3.98 16 12 C 0.03 1.29 3.29 84.93 0.28 1.57 16 13 N -0.87 -44.18 11.73 21.66 0.25 -43.92 16 14 Si 0.95 37.43 29.63 68.60 2.03 39.47 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 18 C 0.12 5.33 3.29 45.71 0.15 5.48 16 19 C -0.12 -4.84 6.41 31.69 0.20 -4.63 16 20 C -0.11 -3.45 6.91 31.91 0.22 -3.23 16 21 C -0.11 -3.24 6.83 31.67 0.22 -3.02 16 22 C -0.12 -4.50 6.28 31.32 0.20 -4.30 16 23 H 0.11 2.46 6.15 -2.91 -0.02 2.44 16 24 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 25 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.05 2.01 6.46 -2.39 -0.02 2.00 16 27 H 0.09 2.41 6.41 -2.39 -0.02 2.39 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.10 4.27 8.05 -2.91 -0.02 4.24 16 30 H 0.09 3.84 8.10 -2.39 -0.02 3.83 16 31 H 0.12 5.86 2.57 -2.38 -0.01 5.85 16 32 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 33 H 0.05 2.53 6.95 -2.39 -0.02 2.51 16 34 H 0.06 3.05 6.90 -2.39 -0.02 3.03 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.24 7.16 -2.39 -0.02 2.23 16 Total: -1.00 -60.69 326.16 6.27 -54.42 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 1.00 Total: 34.99 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.47 Total: -23.05 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -1.18 Total: -68.10 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.05 Total: -37.73 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.47 kcal Total: -60.69 6.27 -54.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616175058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.912 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds