Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46991 * 2 1 4 4 C 1.38168 * 120.02633 * 94.57895 * 3 2 1 5 5 C 1.38245 * 120.05168 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.11438 * 359.97438 * 5 4 3 7 7 C 1.38122 * 120.05686 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.02730 * 179.72470 * 7 6 5 9 9 N 1.46897 * 109.47597 * 259.99752 * 8 7 6 10 10 C 1.38712 * 120.02823 * 274.54339 * 3 2 1 11 11 O 1.35894 * 120.05542 * 0.03608 * 10 3 2 12 12 C 1.42904 * 117.00529 * 270.13571 * 11 10 3 13 13 C 1.52997 * 109.47130 * 175.11910 * 12 11 10 14 14 C 1.53006 * 109.46673 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00687 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99621 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99710 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00154 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00179 * 19 17 15 21 21 H 1.48500 * 109.47268 * 210.00619 * 19 17 15 22 22 H 1.48501 * 109.46752 * 330.00473 * 19 17 15 23 23 H 1.08994 * 109.47439 * 304.90607 * 1 2 3 24 24 H 1.09001 * 109.47318 * 64.90718 * 1 2 3 25 25 H 1.09005 * 109.46764 * 184.90444 * 1 2 3 26 26 H 1.08999 * 109.47075 * 240.00195 * 2 1 3 27 27 H 1.08998 * 109.47299 * 119.99475 * 2 1 3 28 28 H 1.08000 * 119.97437 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.94010 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.97403 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47541 * 20.00352 * 8 7 6 32 32 H 1.09003 * 109.47465 * 140.00144 * 8 7 6 33 33 H 1.00899 * 111.00873 * 180.02562 * 9 8 7 34 34 H 1.00895 * 111.00110 * 303.96086 * 9 8 7 35 35 H 1.08995 * 109.46880 * 295.12427 * 12 11 10 36 36 H 1.09001 * 109.46863 * 55.11994 * 12 11 10 37 37 H 1.08995 * 109.47662 * 300.00039 * 13 12 11 38 38 H 1.09001 * 109.47179 * 60.00277 * 13 12 11 39 39 H 1.09003 * 109.46876 * 300.00084 * 14 13 12 40 40 H 1.09001 * 109.47132 * 60.00198 * 14 13 12 41 41 H 0.97003 * 119.99333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3528 2.0409 1.1924 5 6 2.8131 3.3444 1.1931 6 6 2.9545 4.0309 0.0010 7 6 2.6365 3.4152 -1.1938 8 6 2.7850 4.1659 -2.4919 9 7 1.4718 4.6635 -2.9229 10 6 2.1740 2.1070 -1.1972 11 8 1.8594 1.4994 -2.3713 12 6 2.9048 0.7830 -3.0317 13 6 2.3375 0.0714 -4.2615 14 6 3.4567 -0.6960 -4.9682 15 6 2.8980 -1.3964 -6.1799 16 1 1.8495 -1.3038 -6.4216 17 6 3.7253 -2.1563 -6.9794 18 7 3.2377 -2.7680 -8.0366 19 14 5.5388 -2.3171 -6.5610 20 1 5.7390 -3.4871 -5.6686 21 1 6.3199 -2.5073 -7.8095 22 1 5.9989 -1.0846 -5.8721 23 1 -0.3634 0.5880 0.8427 24 1 -0.3634 0.4358 -0.9307 25 1 -0.3633 -1.0240 0.0879 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.2428 1.5070 2.1248 29 1 3.0635 3.8272 2.1262 30 1 3.3148 5.0491 0.0041 31 1 3.4635 5.0071 -2.3497 32 1 3.1884 3.4986 -3.2536 33 1 1.5445 5.1706 -3.7922 34 1 0.8065 3.9089 -2.9995 35 1 3.6831 1.4802 -3.3420 36 1 3.3281 0.0464 -2.3487 37 1 1.5592 -0.6257 -3.9512 38 1 1.9142 0.8080 -4.9444 39 1 4.2353 0.0009 -5.2785 40 1 3.8796 -1.4326 -4.2850 41 1 3.8198 -3.3023 -8.5993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691425934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -41.314040 kcal Electronic energy + Delta-G solvation = -19845.218851 eV Core-core repulsion = 16917.179712 eV Total energy + Delta-G solvation = -2928.039139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32135 -37.35787 -35.35114 -34.11849 -33.37432 -31.87096 -30.01953 -29.15489 -27.27554 -24.97457 -23.98333 -22.84519 -21.52598 -20.50995 -20.22940 -17.55554 -16.77941 -16.67767 -16.12843 -15.32992 -14.87970 -14.64590 -14.46257 -14.16456 -13.99389 -13.72784 -13.40477 -12.95027 -12.73756 -12.59348 -12.26062 -12.18438 -11.82884 -11.74765 -11.46851 -11.15568 -10.99532 -10.85964 -10.73674 -10.16846 -9.96203 -9.77489 -9.51651 -9.26474 -8.91955 -8.61774 -8.59099 -8.45734 -6.09157 -4.07971 1.18200 1.26864 3.26408 3.34122 3.36642 3.44292 3.98367 4.40122 4.62108 4.67353 4.81129 4.85604 5.13639 5.22681 5.24188 5.32823 5.34275 5.42295 5.44947 5.53591 5.56720 5.64127 5.72496 5.88744 5.91304 5.98334 6.10134 6.28378 6.35760 6.39969 6.41635 6.46459 6.56823 6.76492 6.78589 7.05248 7.19656 7.31326 7.41772 7.67420 7.78260 8.48297 8.95616 9.52477 11.04174 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.004584 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.547782 B = 6107.328653 C = 6552.031450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.100 4.100 4 C -0.109 4.109 5 C -0.129 4.129 6 C -0.098 4.098 7 C -0.101 4.101 8 C 0.105 3.895 9 N -0.844 5.844 10 C 0.112 3.888 11 O -0.335 6.335 12 C 0.066 3.934 13 C -0.098 4.098 14 C -0.010 4.010 15 C -0.521 4.521 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.341 0.659 34 H 0.349 0.651 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 11.934 18.059 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.101 4.101 4 C -0.127 4.127 5 C -0.147 4.147 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.026 4.026 9 N -0.374 5.374 10 C 0.067 3.933 11 O -0.253 6.253 12 C -0.008 4.008 13 C -0.136 4.136 14 C -0.047 4.047 15 C -0.559 4.559 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.903 12.229 18.464 22.164 hybrid contribution 1.368 -0.779 -0.605 1.686 sum 0.465 11.450 17.859 21.219 Atomic orbital electron populations 1.21682 0.94390 1.01542 1.02290 1.20463 0.96642 0.92046 1.02824 1.20248 1.00190 0.96975 0.92666 1.20923 0.99605 0.95100 0.97059 1.21083 1.00896 0.94825 0.97935 1.20883 0.99872 0.99485 0.91414 1.20129 1.00069 0.94161 0.95821 1.20565 0.91897 0.97157 0.92941 1.58820 1.09025 1.31663 1.37860 1.18449 0.98129 0.90842 0.85862 1.86038 1.37344 1.68757 1.33114 1.23073 0.89157 0.93921 0.94627 1.21483 1.00247 0.98685 0.93185 1.19510 0.94146 0.95083 0.95961 1.21070 0.97580 1.29307 1.07952 0.90854 1.25018 0.98589 0.95026 0.94742 1.69912 1.35934 1.32433 1.15744 0.86792 0.85646 0.78976 0.77956 1.20204 1.21263 1.19104 0.93074 0.91906 0.92471 0.90483 0.91422 0.85955 0.86024 0.85896 0.90648 0.94142 0.84678 0.83814 0.93534 0.93317 0.91721 0.91916 0.96568 0.96916 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 37.16 0.37 -1.26 16 2 C -0.08 -1.00 5.79 -27.88 -0.16 -1.17 16 3 C -0.10 -1.30 5.15 -104.47 -0.54 -1.84 16 4 C -0.11 -1.21 9.68 -39.60 -0.38 -1.59 16 5 C -0.13 -1.36 10.04 -39.56 -0.40 -1.75 16 6 C -0.10 -1.12 9.67 -39.61 -0.38 -1.50 16 7 C -0.10 -1.33 5.41 -104.48 -0.56 -1.89 16 8 C 0.10 1.29 6.57 -4.98 -0.03 1.26 16 9 N -0.84 -10.04 9.61 -11.41 -0.11 -10.15 16 10 C 0.11 1.60 5.66 -39.22 -0.22 1.38 16 11 O -0.33 -5.29 8.58 -19.41 -0.17 -5.46 16 12 C 0.07 1.10 5.42 37.16 0.20 1.30 16 13 C -0.10 -1.94 5.52 -26.73 -0.15 -2.09 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 16 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.06 6.47 -51.93 -0.34 0.72 16 27 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 30 H 0.12 1.17 8.03 -52.48 -0.42 0.75 16 31 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 32 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16 33 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 34 H 0.35 4.48 8.91 -39.29 -0.35 4.13 16 35 H 0.05 0.76 7.07 -51.93 -0.37 0.39 16 36 H 0.05 0.79 7.29 -51.93 -0.38 0.41 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 40 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -30.55 335.72 -8.61 -39.16 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.70 Total: 4.20 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -2.80 Total: -22.74 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.66 Total: -37.07 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.17 Total: -5.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.55 -8.61 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691425934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.154 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds