Wall clock time and date at job start Mon Mar 30 2020 06:57:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50703 * 109.46991 * 2 1
4 4 C 1.38168 * 120.02633 * 94.57895 * 3 2 1
5 5 C 1.38245 * 120.05168 * 180.02562 * 4 3 2
6 6 C 1.38286 * 120.11438 * 359.97438 * 5 4 3
7 7 C 1.38122 * 120.05686 * 359.97438 * 6 5 4
8 8 C 1.50692 * 120.02730 * 179.72470 * 7 6 5
9 9 N 1.46897 * 109.47597 * 259.99752 * 8 7 6
10 10 C 1.38712 * 120.02823 * 274.54339 * 3 2 1
11 11 O 1.35894 * 120.05542 * 0.03608 * 10 3 2
12 12 C 1.42904 * 117.00529 * 270.13571 * 11 10 3
13 13 C 1.52997 * 109.47130 * 175.11910 * 12 11 10
14 14 C 1.53006 * 109.46673 * 180.02562 * 13 12 11
15 15 C 1.50697 * 109.46637 * 180.02562 * 14 13 12
16 16 H 1.08003 * 120.00687 * 359.97438 * 15 14 13
17 17 C 1.37885 * 119.99621 * 180.02562 * 15 14 13
18 18 N 1.31516 * 119.99710 * 179.97438 * 17 15 14
19 19 Si 1.86800 * 120.00154 * 359.97438 * 17 15 14
20 20 H 1.48503 * 109.46815 * 90.00179 * 19 17 15
21 21 H 1.48500 * 109.47268 * 210.00619 * 19 17 15
22 22 H 1.48501 * 109.46752 * 330.00473 * 19 17 15
23 23 H 1.08994 * 109.47439 * 304.90607 * 1 2 3
24 24 H 1.09001 * 109.47318 * 64.90718 * 1 2 3
25 25 H 1.09005 * 109.46764 * 184.90444 * 1 2 3
26 26 H 1.08999 * 109.47075 * 240.00195 * 2 1 3
27 27 H 1.08998 * 109.47299 * 119.99475 * 2 1 3
28 28 H 1.08000 * 119.97437 * 359.97438 * 4 3 2
29 29 H 1.08003 * 119.94010 * 180.02562 * 5 4 3
30 30 H 1.08003 * 119.97403 * 180.02562 * 6 5 4
31 31 H 1.09005 * 109.47541 * 20.00352 * 8 7 6
32 32 H 1.09003 * 109.47465 * 140.00144 * 8 7 6
33 33 H 1.00899 * 111.00873 * 180.02562 * 9 8 7
34 34 H 1.00895 * 111.00110 * 303.96086 * 9 8 7
35 35 H 1.08995 * 109.46880 * 295.12427 * 12 11 10
36 36 H 1.09001 * 109.46863 * 55.11994 * 12 11 10
37 37 H 1.08995 * 109.47662 * 300.00039 * 13 12 11
38 38 H 1.09001 * 109.47179 * 60.00277 * 13 12 11
39 39 H 1.09003 * 109.46876 * 300.00084 * 14 13 12
40 40 H 1.09001 * 109.47132 * 60.00198 * 14 13 12
41 41 H 0.97003 * 119.99333 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3528 2.0409 1.1924
5 6 2.8131 3.3444 1.1931
6 6 2.9545 4.0309 0.0010
7 6 2.6365 3.4152 -1.1938
8 6 2.7850 4.1659 -2.4919
9 7 1.4718 4.6635 -2.9229
10 6 2.1740 2.1070 -1.1972
11 8 1.8594 1.4994 -2.3713
12 6 2.9048 0.7830 -3.0317
13 6 2.3375 0.0714 -4.2615
14 6 3.4567 -0.6960 -4.9682
15 6 2.8980 -1.3964 -6.1799
16 1 1.8495 -1.3038 -6.4216
17 6 3.7253 -2.1563 -6.9794
18 7 3.2377 -2.7680 -8.0366
19 14 5.5388 -2.3171 -6.5610
20 1 5.7390 -3.4871 -5.6686
21 1 6.3199 -2.5073 -7.8095
22 1 5.9989 -1.0846 -5.8721
23 1 -0.3634 0.5880 0.8427
24 1 -0.3634 0.4358 -0.9307
25 1 -0.3633 -1.0240 0.0879
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5137 0.8900
28 1 2.2428 1.5070 2.1248
29 1 3.0635 3.8272 2.1262
30 1 3.3148 5.0491 0.0041
31 1 3.4635 5.0071 -2.3497
32 1 3.1884 3.4986 -3.2536
33 1 1.5445 5.1706 -3.7922
34 1 0.8065 3.9089 -2.9995
35 1 3.6831 1.4802 -3.3420
36 1 3.3281 0.0464 -2.3487
37 1 1.5592 -0.6257 -3.9512
38 1 1.9142 0.8080 -4.9444
39 1 4.2353 0.0009 -5.2785
40 1 3.8796 -1.4326 -4.2850
41 1 3.8198 -3.3023 -8.5993
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000691425934.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:57:57
Heat of formation + Delta-G solvation = -41.314040 kcal
Electronic energy + Delta-G solvation = -19845.218851 eV
Core-core repulsion = 16917.179712 eV
Total energy + Delta-G solvation = -2928.039139 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 263.163 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.32135 -37.35787 -35.35114 -34.11849 -33.37432 -31.87096 -30.01953 -29.15489
-27.27554 -24.97457 -23.98333 -22.84519 -21.52598 -20.50995 -20.22940 -17.55554
-16.77941 -16.67767 -16.12843 -15.32992 -14.87970 -14.64590 -14.46257 -14.16456
-13.99389 -13.72784 -13.40477 -12.95027 -12.73756 -12.59348 -12.26062 -12.18438
-11.82884 -11.74765 -11.46851 -11.15568 -10.99532 -10.85964 -10.73674 -10.16846
-9.96203 -9.77489 -9.51651 -9.26474 -8.91955 -8.61774 -8.59099 -8.45734
-6.09157 -4.07971 1.18200 1.26864 3.26408 3.34122 3.36642 3.44292
3.98367 4.40122 4.62108 4.67353 4.81129 4.85604 5.13639 5.22681
5.24188 5.32823 5.34275 5.42295 5.44947 5.53591 5.56720 5.64127
5.72496 5.88744 5.91304 5.98334 6.10134 6.28378 6.35760 6.39969
6.41635 6.46459 6.56823 6.76492 6.78589 7.05248 7.19656 7.31326
7.41772 7.67420 7.78260 8.48297 8.95616 9.52477 11.04174
Molecular weight = 263.16amu
Principal moments of inertia in cm(-1)
A = 0.021393 B = 0.004584 C = 0.004272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.547782 B = 6107.328653 C = 6552.031450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.082 4.082
3 C -0.100 4.100
4 C -0.109 4.109
5 C -0.129 4.129
6 C -0.098 4.098
7 C -0.101 4.101
8 C 0.105 3.895
9 N -0.844 5.844
10 C 0.112 3.888
11 O -0.335 6.335
12 C 0.066 3.934
13 C -0.098 4.098
14 C -0.010 4.010
15 C -0.521 4.521
16 H 0.073 0.927
17 C 0.068 3.932
18 N -0.901 5.901
19 Si 0.879 3.121
20 H -0.276 1.276
21 H -0.287 1.287
22 H -0.266 1.266
23 H 0.050 0.950
24 H 0.062 0.938
25 H 0.056 0.944
26 H 0.077 0.923
27 H 0.067 0.933
28 H 0.122 0.878
29 H 0.122 0.878
30 H 0.123 0.877
31 H 0.075 0.925
32 H 0.040 0.960
33 H 0.341 0.659
34 H 0.349 0.651
35 H 0.046 0.954
36 H 0.049 0.951
37 H 0.064 0.936
38 H 0.062 0.938
39 H 0.016 0.984
40 H 0.013 0.987
41 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.797 11.934 18.059 21.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.120 4.120
3 C -0.101 4.101
4 C -0.127 4.127
5 C -0.147 4.147
6 C -0.117 4.117
7 C -0.102 4.102
8 C -0.026 4.026
9 N -0.374 5.374
10 C 0.067 3.933
11 O -0.253 6.253
12 C -0.008 4.008
13 C -0.136 4.136
14 C -0.047 4.047
15 C -0.559 4.559
16 H 0.091 0.909
17 C -0.134 4.134
18 N -0.540 5.540
19 Si 0.706 3.294
20 H -0.202 1.202
21 H -0.213 1.213
22 H -0.191 1.191
23 H 0.069 0.931
24 H 0.081 0.919
25 H 0.075 0.925
26 H 0.095 0.905
27 H 0.086 0.914
28 H 0.140 0.860
29 H 0.140 0.860
30 H 0.141 0.859
31 H 0.094 0.906
32 H 0.059 0.941
33 H 0.153 0.847
34 H 0.162 0.838
35 H 0.065 0.935
36 H 0.067 0.933
37 H 0.083 0.917
38 H 0.081 0.919
39 H 0.034 0.966
40 H 0.031 0.969
41 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -0.903 12.229 18.464 22.164
hybrid contribution 1.368 -0.779 -0.605 1.686
sum 0.465 11.450 17.859 21.219
Atomic orbital electron populations
1.21682 0.94390 1.01542 1.02290 1.20463 0.96642 0.92046 1.02824
1.20248 1.00190 0.96975 0.92666 1.20923 0.99605 0.95100 0.97059
1.21083 1.00896 0.94825 0.97935 1.20883 0.99872 0.99485 0.91414
1.20129 1.00069 0.94161 0.95821 1.20565 0.91897 0.97157 0.92941
1.58820 1.09025 1.31663 1.37860 1.18449 0.98129 0.90842 0.85862
1.86038 1.37344 1.68757 1.33114 1.23073 0.89157 0.93921 0.94627
1.21483 1.00247 0.98685 0.93185 1.19510 0.94146 0.95083 0.95961
1.21070 0.97580 1.29307 1.07952 0.90854 1.25018 0.98589 0.95026
0.94742 1.69912 1.35934 1.32433 1.15744 0.86792 0.85646 0.78976
0.77956 1.20204 1.21263 1.19104 0.93074 0.91906 0.92471 0.90483
0.91422 0.85955 0.86024 0.85896 0.90648 0.94142 0.84678 0.83814
0.93534 0.93317 0.91721 0.91916 0.96568 0.96916 0.92650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.63 9.89 37.16 0.37 -1.26 16
2 C -0.08 -1.00 5.79 -27.88 -0.16 -1.17 16
3 C -0.10 -1.30 5.15 -104.47 -0.54 -1.84 16
4 C -0.11 -1.21 9.68 -39.60 -0.38 -1.59 16
5 C -0.13 -1.36 10.04 -39.56 -0.40 -1.75 16
6 C -0.10 -1.12 9.67 -39.61 -0.38 -1.50 16
7 C -0.10 -1.33 5.41 -104.48 -0.56 -1.89 16
8 C 0.10 1.29 6.57 -4.98 -0.03 1.26 16
9 N -0.84 -10.04 9.61 -11.41 -0.11 -10.15 16
10 C 0.11 1.60 5.66 -39.22 -0.22 1.38 16
11 O -0.33 -5.29 8.58 -19.41 -0.17 -5.46 16
12 C 0.07 1.10 5.42 37.16 0.20 1.30 16
13 C -0.10 -1.94 5.52 -26.73 -0.15 -2.09 16
14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16
15 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16
16 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16
17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
18 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16
19 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16
20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
22 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16
23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
26 H 0.08 1.06 6.47 -51.93 -0.34 0.72 16
27 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16
28 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16
29 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16
30 H 0.12 1.17 8.03 -52.48 -0.42 0.75 16
31 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16
32 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16
33 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16
34 H 0.35 4.48 8.91 -39.29 -0.35 4.13 16
35 H 0.05 0.76 7.07 -51.93 -0.37 0.39 16
36 H 0.05 0.79 7.29 -51.93 -0.38 0.41 16
37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16
40 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16
41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
LS Contribution 335.72 15.07 5.06 5.06
Total: -1.00 -30.55 335.72 -8.61 -39.16
By element:
Atomic # 1 Polarization: 10.90 SS G_CDS: -6.70 Total: 4.20 kcal
Atomic # 6 Polarization: -19.94 SS G_CDS: -2.80 Total: -22.74 kcal
Atomic # 7 Polarization: -37.73 SS G_CDS: 0.66 Total: -37.07 kcal
Atomic # 8 Polarization: -5.29 SS G_CDS: -0.17 Total: -5.46 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -30.55 -8.61 -39.16 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691425934.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.154 kcal
(2) G-P(sol) polarization free energy of solvation -30.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds