Wall clock time and date at job start Mon Mar 30 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46991 * 2 1 4 4 C 1.38168 * 120.02633 * 94.57895 * 3 2 1 5 5 C 1.38245 * 120.05168 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.11438 * 359.97438 * 5 4 3 7 7 C 1.38122 * 120.05686 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.02730 * 179.72470 * 7 6 5 9 9 N 1.46897 * 109.47597 * 259.99752 * 8 7 6 10 10 C 1.38712 * 120.02823 * 274.54339 * 3 2 1 11 11 O 1.35894 * 120.05542 * 0.03608 * 10 3 2 12 12 C 1.42904 * 117.00529 * 270.13571 * 11 10 3 13 13 C 1.52997 * 109.47130 * 175.11910 * 12 11 10 14 14 C 1.53006 * 109.46673 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00687 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99621 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99710 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00154 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00179 * 19 17 15 21 21 H 1.48500 * 109.47268 * 210.00619 * 19 17 15 22 22 H 1.48501 * 109.46752 * 330.00473 * 19 17 15 23 23 H 1.08994 * 109.47439 * 304.90607 * 1 2 3 24 24 H 1.09001 * 109.47318 * 64.90718 * 1 2 3 25 25 H 1.09005 * 109.46764 * 184.90444 * 1 2 3 26 26 H 1.08999 * 109.47075 * 240.00195 * 2 1 3 27 27 H 1.08998 * 109.47299 * 119.99475 * 2 1 3 28 28 H 1.08000 * 119.97437 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.94010 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.97403 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47541 * 20.00352 * 8 7 6 32 32 H 1.09003 * 109.47465 * 140.00144 * 8 7 6 33 33 H 1.00899 * 111.00873 * 180.02562 * 9 8 7 34 34 H 1.00895 * 111.00110 * 303.96086 * 9 8 7 35 35 H 1.08995 * 109.46880 * 295.12427 * 12 11 10 36 36 H 1.09001 * 109.46863 * 55.11994 * 12 11 10 37 37 H 1.08995 * 109.47662 * 300.00039 * 13 12 11 38 38 H 1.09001 * 109.47179 * 60.00277 * 13 12 11 39 39 H 1.09003 * 109.46876 * 300.00084 * 14 13 12 40 40 H 1.09001 * 109.47132 * 60.00198 * 14 13 12 41 41 H 0.97003 * 119.99333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3528 2.0409 1.1924 5 6 2.8131 3.3444 1.1931 6 6 2.9545 4.0309 0.0010 7 6 2.6365 3.4152 -1.1938 8 6 2.7850 4.1659 -2.4919 9 7 1.4718 4.6635 -2.9229 10 6 2.1740 2.1070 -1.1972 11 8 1.8594 1.4994 -2.3713 12 6 2.9048 0.7830 -3.0317 13 6 2.3375 0.0714 -4.2615 14 6 3.4567 -0.6960 -4.9682 15 6 2.8980 -1.3964 -6.1799 16 1 1.8495 -1.3038 -6.4216 17 6 3.7253 -2.1563 -6.9794 18 7 3.2377 -2.7680 -8.0366 19 14 5.5388 -2.3171 -6.5610 20 1 5.7390 -3.4871 -5.6686 21 1 6.3199 -2.5073 -7.8095 22 1 5.9989 -1.0846 -5.8721 23 1 -0.3634 0.5880 0.8427 24 1 -0.3634 0.4358 -0.9307 25 1 -0.3633 -1.0240 0.0879 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.2428 1.5070 2.1248 29 1 3.0635 3.8272 2.1262 30 1 3.3148 5.0491 0.0041 31 1 3.4635 5.0071 -2.3497 32 1 3.1884 3.4986 -3.2536 33 1 1.5445 5.1706 -3.7922 34 1 0.8065 3.9089 -2.9995 35 1 3.6831 1.4802 -3.3420 36 1 3.3281 0.0464 -2.3487 37 1 1.5592 -0.6257 -3.9512 38 1 1.9142 0.8080 -4.9444 39 1 4.2353 0.0009 -5.2785 40 1 3.8796 -1.4326 -4.2850 41 1 3.8198 -3.3023 -8.5993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691425934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:56 Heat of formation + Delta-G solvation = -60.204531 kcal Electronic energy + Delta-G solvation = -19846.038004 eV Core-core repulsion = 16917.179712 eV Total energy + Delta-G solvation = -2928.858292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31277 -38.46889 -36.27500 -35.95457 -34.33511 -33.83508 -30.98630 -30.22334 -28.92405 -25.96254 -25.10904 -24.37287 -22.48492 -22.00859 -21.42748 -19.04781 -18.51419 -17.73959 -17.06345 -16.50012 -16.12904 -16.07943 -15.72383 -15.46615 -15.07547 -14.75143 -14.68752 -14.32817 -14.20534 -13.78380 -13.72941 -13.14234 -13.02830 -12.88446 -12.73263 -12.54627 -12.26753 -12.09574 -11.91562 -11.85752 -11.67236 -11.59019 -11.36481 -10.79736 -10.71547 -9.84723 -9.53320 -9.41762 -8.32198 -6.37560 0.24588 0.37830 1.34506 1.36316 1.48007 2.33748 2.45325 2.93186 3.02836 3.71050 3.78388 3.90781 3.99374 4.01522 4.16783 4.28067 4.33844 4.41810 4.42274 4.49052 4.54382 4.62885 4.65683 4.72529 4.76394 4.93281 4.98091 5.01592 5.08089 5.19229 5.35033 5.40182 5.47233 5.52235 5.55468 5.59801 5.64971 5.89294 6.10064 6.24001 6.49710 6.62204 6.71112 7.27028 8.84711 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.004584 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.547782 B = 6107.328653 C = 6552.031450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.112 4.112 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.113 4.113 8 C 0.105 3.895 9 N -0.844 5.844 10 C 0.080 3.920 11 O -0.343 6.343 12 C 0.079 3.921 13 C -0.089 4.089 14 C -0.005 4.005 15 C -0.536 4.536 16 H 0.031 0.969 17 C 0.006 3.994 18 N -0.950 5.950 19 Si 0.951 3.049 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.245 1.245 23 H 0.062 0.938 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.024 0.976 33 H 0.350 0.650 34 H 0.341 0.659 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 13.117 20.972 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 C -0.112 4.112 4 C -0.128 4.128 5 C -0.139 4.139 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.025 4.025 9 N -0.374 5.374 10 C 0.037 3.963 11 O -0.261 6.261 12 C 0.005 3.995 13 C -0.127 4.127 14 C -0.043 4.043 15 C -0.574 4.574 16 H 0.049 0.951 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.169 1.169 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.161 0.839 31 H 0.110 0.890 32 H 0.042 0.958 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.894 13.437 21.391 25.277 hybrid contribution 0.688 -1.095 -1.473 1.960 sum 1.581 12.342 19.918 23.485 Atomic orbital electron populations 1.21643 0.94182 1.02137 1.01542 1.20477 0.96827 0.91933 1.02765 1.20432 1.00470 0.97320 0.93011 1.21256 0.98736 0.95590 0.97249 1.21493 0.99068 0.94465 0.98879 1.21195 0.99427 1.00489 0.91106 1.20298 1.00377 0.93916 0.96808 1.20591 0.92124 0.97388 0.92440 1.58848 1.08795 1.31284 1.38486 1.18707 1.00479 0.91639 0.85507 1.86007 1.36986 1.68875 1.34196 1.22717 0.89167 0.94120 0.93459 1.21240 0.98872 0.98192 0.94376 1.19415 0.95164 0.95310 0.94379 1.21412 0.96013 1.29963 1.09978 0.95102 1.26027 1.04265 0.94466 0.94381 1.70071 1.38140 1.33632 1.17231 0.85645 0.78696 0.80090 0.78161 1.18923 1.20811 1.16892 0.91884 0.94179 0.91550 0.92613 0.89324 0.83419 0.82828 0.83904 0.88980 0.95782 0.83707 0.84664 0.92987 0.92752 0.92743 0.92886 0.95831 0.95850 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.34 16 2 C -0.08 -1.92 5.79 29.85 0.17 -1.74 16 3 C -0.11 -2.73 5.15 -19.77 -0.10 -2.83 16 4 C -0.11 -2.10 9.68 22.25 0.22 -1.88 16 5 C -0.12 -2.09 10.04 22.28 0.22 -1.86 16 6 C -0.10 -2.07 9.67 22.25 0.22 -1.86 16 7 C -0.11 -2.81 5.41 -19.77 -0.11 -2.92 16 8 C 0.10 2.48 6.57 85.55 0.56 3.04 16 9 N -0.84 -19.62 9.61 -190.02 -1.83 -21.44 16 10 C 0.08 2.25 5.66 22.51 0.13 2.37 16 11 O -0.34 -10.92 8.58 -92.36 -0.79 -11.71 16 12 C 0.08 2.63 5.42 71.98 0.39 3.02 16 13 C -0.09 -3.59 5.52 30.60 0.17 -3.42 16 14 C -0.01 -0.25 4.04 29.85 0.12 -0.12 16 15 C -0.54 -31.27 9.66 25.60 0.25 -31.02 16 16 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 17 C 0.01 0.33 5.47 84.66 0.46 0.79 16 18 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 19 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 1.51 6.47 -2.39 -0.02 1.50 16 27 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 28 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.14 2.22 8.03 -2.91 -0.02 2.19 16 31 H 0.09 1.82 8.00 -2.38 -0.02 1.80 16 32 H 0.02 0.64 6.56 -2.39 -0.02 0.62 16 33 H 0.35 6.83 9.08 -89.69 -0.81 6.02 16 34 H 0.34 8.85 8.91 -89.70 -0.80 8.05 16 35 H 0.05 1.66 7.07 -2.39 -0.02 1.64 16 36 H 0.05 1.73 7.29 -2.39 -0.02 1.71 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 40 H 0.02 1.04 7.57 -2.39 -0.02 1.03 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -67.29 335.72 2.33 -64.96 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.65 Total: 22.84 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 3.41 Total: -40.79 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.53 Total: -81.11 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.79 Total: -11.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -67.29 2.33 -64.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691425934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.755 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds