Wall clock time and date at job start Mon Mar 30 2020 06:57:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50703 * 109.46991 * 2 1
4 4 C 1.38168 * 120.02633 * 94.57895 * 3 2 1
5 5 C 1.38245 * 120.05168 * 180.02562 * 4 3 2
6 6 C 1.38286 * 120.11438 * 359.97438 * 5 4 3
7 7 C 1.38122 * 120.05686 * 359.97438 * 6 5 4
8 8 C 1.50692 * 120.02730 * 179.72470 * 7 6 5
9 9 N 1.46897 * 109.47597 * 259.99752 * 8 7 6
10 10 C 1.38712 * 120.02823 * 274.54339 * 3 2 1
11 11 O 1.35894 * 120.05542 * 0.03608 * 10 3 2
12 12 C 1.42904 * 117.00529 * 270.13571 * 11 10 3
13 13 C 1.52997 * 109.47130 * 175.11910 * 12 11 10
14 14 C 1.53006 * 109.46673 * 180.02562 * 13 12 11
15 15 C 1.50697 * 109.46637 * 180.02562 * 14 13 12
16 16 H 1.08003 * 120.00687 * 359.97438 * 15 14 13
17 17 C 1.37885 * 119.99621 * 180.02562 * 15 14 13
18 18 N 1.31516 * 119.99710 * 179.97438 * 17 15 14
19 19 Si 1.86800 * 120.00154 * 359.97438 * 17 15 14
20 20 H 1.48503 * 109.46815 * 90.00179 * 19 17 15
21 21 H 1.48500 * 109.47268 * 210.00619 * 19 17 15
22 22 H 1.48501 * 109.46752 * 330.00473 * 19 17 15
23 23 H 1.08994 * 109.47439 * 304.90607 * 1 2 3
24 24 H 1.09001 * 109.47318 * 64.90718 * 1 2 3
25 25 H 1.09005 * 109.46764 * 184.90444 * 1 2 3
26 26 H 1.08999 * 109.47075 * 240.00195 * 2 1 3
27 27 H 1.08998 * 109.47299 * 119.99475 * 2 1 3
28 28 H 1.08000 * 119.97437 * 359.97438 * 4 3 2
29 29 H 1.08003 * 119.94010 * 180.02562 * 5 4 3
30 30 H 1.08003 * 119.97403 * 180.02562 * 6 5 4
31 31 H 1.09005 * 109.47541 * 20.00352 * 8 7 6
32 32 H 1.09003 * 109.47465 * 140.00144 * 8 7 6
33 33 H 1.00899 * 111.00873 * 180.02562 * 9 8 7
34 34 H 1.00895 * 111.00110 * 303.96086 * 9 8 7
35 35 H 1.08995 * 109.46880 * 295.12427 * 12 11 10
36 36 H 1.09001 * 109.46863 * 55.11994 * 12 11 10
37 37 H 1.08995 * 109.47662 * 300.00039 * 13 12 11
38 38 H 1.09001 * 109.47179 * 60.00277 * 13 12 11
39 39 H 1.09003 * 109.46876 * 300.00084 * 14 13 12
40 40 H 1.09001 * 109.47132 * 60.00198 * 14 13 12
41 41 H 0.97003 * 119.99333 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 6 2.3528 2.0409 1.1924
5 6 2.8131 3.3444 1.1931
6 6 2.9545 4.0309 0.0010
7 6 2.6365 3.4152 -1.1938
8 6 2.7850 4.1659 -2.4919
9 7 1.4718 4.6635 -2.9229
10 6 2.1740 2.1070 -1.1972
11 8 1.8594 1.4994 -2.3713
12 6 2.9048 0.7830 -3.0317
13 6 2.3375 0.0714 -4.2615
14 6 3.4567 -0.6960 -4.9682
15 6 2.8980 -1.3964 -6.1799
16 1 1.8495 -1.3038 -6.4216
17 6 3.7253 -2.1563 -6.9794
18 7 3.2377 -2.7680 -8.0366
19 14 5.5388 -2.3171 -6.5610
20 1 5.7390 -3.4871 -5.6686
21 1 6.3199 -2.5073 -7.8095
22 1 5.9989 -1.0846 -5.8721
23 1 -0.3634 0.5880 0.8427
24 1 -0.3634 0.4358 -0.9307
25 1 -0.3633 -1.0240 0.0879
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5137 0.8900
28 1 2.2428 1.5070 2.1248
29 1 3.0635 3.8272 2.1262
30 1 3.3148 5.0491 0.0041
31 1 3.4635 5.0071 -2.3497
32 1 3.1884 3.4986 -3.2536
33 1 1.5445 5.1706 -3.7922
34 1 0.8065 3.9089 -2.9995
35 1 3.6831 1.4802 -3.3420
36 1 3.3281 0.0464 -2.3487
37 1 1.5592 -0.6257 -3.9512
38 1 1.9142 0.8080 -4.9444
39 1 4.2353 0.0009 -5.2785
40 1 3.8796 -1.4326 -4.2850
41 1 3.8198 -3.3023 -8.5993
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000691425934.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:57:56
Heat of formation + Delta-G solvation = -60.204531 kcal
Electronic energy + Delta-G solvation = -19846.038004 eV
Core-core repulsion = 16917.179712 eV
Total energy + Delta-G solvation = -2928.858292 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 263.163 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-41.31277 -38.46889 -36.27500 -35.95457 -34.33511 -33.83508 -30.98630 -30.22334
-28.92405 -25.96254 -25.10904 -24.37287 -22.48492 -22.00859 -21.42748 -19.04781
-18.51419 -17.73959 -17.06345 -16.50012 -16.12904 -16.07943 -15.72383 -15.46615
-15.07547 -14.75143 -14.68752 -14.32817 -14.20534 -13.78380 -13.72941 -13.14234
-13.02830 -12.88446 -12.73263 -12.54627 -12.26753 -12.09574 -11.91562 -11.85752
-11.67236 -11.59019 -11.36481 -10.79736 -10.71547 -9.84723 -9.53320 -9.41762
-8.32198 -6.37560 0.24588 0.37830 1.34506 1.36316 1.48007 2.33748
2.45325 2.93186 3.02836 3.71050 3.78388 3.90781 3.99374 4.01522
4.16783 4.28067 4.33844 4.41810 4.42274 4.49052 4.54382 4.62885
4.65683 4.72529 4.76394 4.93281 4.98091 5.01592 5.08089 5.19229
5.35033 5.40182 5.47233 5.52235 5.55468 5.59801 5.64971 5.89294
6.10064 6.24001 6.49710 6.62204 6.71112 7.27028 8.84711
Molecular weight = 263.16amu
Principal moments of inertia in cm(-1)
A = 0.021393 B = 0.004584 C = 0.004272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1308.547782 B = 6107.328653 C = 6552.031450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.083 4.083
3 C -0.112 4.112
4 C -0.110 4.110
5 C -0.121 4.121
6 C -0.104 4.104
7 C -0.113 4.113
8 C 0.105 3.895
9 N -0.844 5.844
10 C 0.080 3.920
11 O -0.343 6.343
12 C 0.079 3.921
13 C -0.089 4.089
14 C -0.005 4.005
15 C -0.536 4.536
16 H 0.031 0.969
17 C 0.006 3.994
18 N -0.950 5.950
19 Si 0.951 3.049
20 H -0.264 1.264
21 H -0.282 1.282
22 H -0.245 1.245
23 H 0.062 0.938
24 H 0.039 0.961
25 H 0.065 0.935
26 H 0.055 0.945
27 H 0.088 0.912
28 H 0.148 0.852
29 H 0.154 0.846
30 H 0.143 0.857
31 H 0.092 0.908
32 H 0.024 0.976
33 H 0.350 0.650
34 H 0.341 0.659
35 H 0.052 0.948
36 H 0.054 0.946
37 H 0.054 0.946
38 H 0.052 0.948
39 H 0.023 0.977
40 H 0.023 0.977
41 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.011 13.117 20.972 24.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.120 4.120
3 C -0.112 4.112
4 C -0.128 4.128
5 C -0.139 4.139
6 C -0.122 4.122
7 C -0.114 4.114
8 C -0.025 4.025
9 N -0.374 5.374
10 C 0.037 3.963
11 O -0.261 6.261
12 C 0.005 3.995
13 C -0.127 4.127
14 C -0.043 4.043
15 C -0.574 4.574
16 H 0.049 0.951
17 C -0.191 4.191
18 N -0.591 5.591
19 Si 0.774 3.226
20 H -0.189 1.189
21 H -0.208 1.208
22 H -0.169 1.169
23 H 0.081 0.919
24 H 0.058 0.942
25 H 0.084 0.916
26 H 0.074 0.926
27 H 0.107 0.893
28 H 0.166 0.834
29 H 0.172 0.828
30 H 0.161 0.839
31 H 0.110 0.890
32 H 0.042 0.958
33 H 0.163 0.837
34 H 0.153 0.847
35 H 0.070 0.930
36 H 0.072 0.928
37 H 0.073 0.927
38 H 0.071 0.929
39 H 0.042 0.958
40 H 0.042 0.958
41 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 0.894 13.437 21.391 25.277
hybrid contribution 0.688 -1.095 -1.473 1.960
sum 1.581 12.342 19.918 23.485
Atomic orbital electron populations
1.21643 0.94182 1.02137 1.01542 1.20477 0.96827 0.91933 1.02765
1.20432 1.00470 0.97320 0.93011 1.21256 0.98736 0.95590 0.97249
1.21493 0.99068 0.94465 0.98879 1.21195 0.99427 1.00489 0.91106
1.20298 1.00377 0.93916 0.96808 1.20591 0.92124 0.97388 0.92440
1.58848 1.08795 1.31284 1.38486 1.18707 1.00479 0.91639 0.85507
1.86007 1.36986 1.68875 1.34196 1.22717 0.89167 0.94120 0.93459
1.21240 0.98872 0.98192 0.94376 1.19415 0.95164 0.95310 0.94379
1.21412 0.96013 1.29963 1.09978 0.95102 1.26027 1.04265 0.94466
0.94381 1.70071 1.38140 1.33632 1.17231 0.85645 0.78696 0.80090
0.78161 1.18923 1.20811 1.16892 0.91884 0.94179 0.91550 0.92613
0.89324 0.83419 0.82828 0.83904 0.88980 0.95782 0.83707 0.84664
0.92987 0.92752 0.92743 0.92886 0.95831 0.95850 0.92367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.06 9.89 71.98 0.71 -2.34 16
2 C -0.08 -1.92 5.79 29.85 0.17 -1.74 16
3 C -0.11 -2.73 5.15 -19.77 -0.10 -2.83 16
4 C -0.11 -2.10 9.68 22.25 0.22 -1.88 16
5 C -0.12 -2.09 10.04 22.28 0.22 -1.86 16
6 C -0.10 -2.07 9.67 22.25 0.22 -1.86 16
7 C -0.11 -2.81 5.41 -19.77 -0.11 -2.92 16
8 C 0.10 2.48 6.57 85.55 0.56 3.04 16
9 N -0.84 -19.62 9.61 -190.02 -1.83 -21.44 16
10 C 0.08 2.25 5.66 22.51 0.13 2.37 16
11 O -0.34 -10.92 8.58 -92.36 -0.79 -11.71 16
12 C 0.08 2.63 5.42 71.98 0.39 3.02 16
13 C -0.09 -3.59 5.52 30.60 0.17 -3.42 16
14 C -0.01 -0.25 4.04 29.85 0.12 -0.12 16
15 C -0.54 -31.27 9.66 25.60 0.25 -31.02 16
16 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16
17 C 0.01 0.33 5.47 84.66 0.46 0.79 16
18 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16
19 Si 0.95 43.92 27.47 68.60 1.88 45.80 16
20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16
21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
22 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16
23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
25 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
26 H 0.06 1.51 6.47 -2.39 -0.02 1.50 16
27 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16
28 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16
29 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16
30 H 0.14 2.22 8.03 -2.91 -0.02 2.19 16
31 H 0.09 1.82 8.00 -2.38 -0.02 1.80 16
32 H 0.02 0.64 6.56 -2.39 -0.02 0.62 16
33 H 0.35 6.83 9.08 -89.69 -0.81 6.02 16
34 H 0.34 8.85 8.91 -89.70 -0.80 8.05 16
35 H 0.05 1.66 7.07 -2.39 -0.02 1.64 16
36 H 0.05 1.73 7.29 -2.39 -0.02 1.71 16
37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16
38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16
39 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16
40 H 0.02 1.04 7.57 -2.39 -0.02 1.03 16
41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
Total: -1.00 -67.29 335.72 2.33 -64.96
By element:
Atomic # 1 Polarization: 23.49 SS G_CDS: -0.65 Total: 22.84 kcal
Atomic # 6 Polarization: -44.20 SS G_CDS: 3.41 Total: -40.79 kcal
Atomic # 7 Polarization: -79.58 SS G_CDS: -1.53 Total: -81.11 kcal
Atomic # 8 Polarization: -10.92 SS G_CDS: -0.79 Total: -11.71 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal
Total: -67.29 2.33 -64.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000691425934.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.755 kcal
(2) G-P(sol) polarization free energy of solvation -67.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.960 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds