Wall clock time and date at job start Mon Mar 30 2020 07:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47206 * 2 1 4 4 C 1.38117 * 120.03810 * 264.99939 * 3 2 1 5 5 C 1.38285 * 120.07201 * 179.97438 * 4 3 2 6 6 C 1.38326 * 120.13493 * 0.02562 * 5 4 3 7 7 C 1.38078 * 120.06908 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.03307 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.46949 * 259.98027 * 8 7 6 10 10 C 1.46899 * 110.99999 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47021 * 154.99908 * 10 9 8 12 12 C 1.53000 * 109.46843 * 274.99599 * 10 9 8 13 13 C 1.38862 * 120.03175 * 84.97618 * 3 2 1 14 14 O 1.35751 * 120.07154 * 0.04557 * 13 3 2 15 15 C 1.34830 * 116.99713 * 89.99560 * 14 13 3 16 16 H 1.07999 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.38655 * 119.99846 * 179.97438 * 15 14 13 18 18 N 1.31556 * 119.99697 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00216 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47228 * 90.00464 * 19 17 15 21 21 H 1.48499 * 109.47268 * 210.00464 * 19 17 15 22 22 H 1.48500 * 109.47278 * 330.00059 * 19 17 15 23 23 H 1.08998 * 109.47137 * 300.00355 * 1 2 3 24 24 H 1.09002 * 109.46874 * 59.99665 * 1 2 3 25 25 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46582 * 240.00102 * 2 1 3 27 27 H 1.09002 * 109.46874 * 120.00335 * 2 1 3 28 28 H 1.08000 * 119.96526 * 359.95602 * 4 3 2 29 29 H 1.08003 * 119.93218 * 179.72405 * 5 4 3 30 30 H 1.07997 * 119.96417 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47367 * 19.97481 * 8 7 6 32 32 H 1.08998 * 109.47378 * 139.98030 * 8 7 6 33 33 H 1.00902 * 111.00072 * 303.95321 * 9 8 7 34 34 H 1.08993 * 109.47459 * 34.99517 * 10 9 8 35 35 H 1.08993 * 109.47323 * 59.99525 * 11 10 9 36 36 H 1.09001 * 109.47038 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46905 * 299.99591 * 11 10 9 38 38 H 1.09006 * 109.47250 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47430 * 299.99832 * 12 10 9 40 40 H 1.08997 * 109.47242 * 60.00309 * 12 10 9 41 41 H 0.97010 * 119.99748 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1911 5 6 2.8216 3.3418 -1.1920 6 6 2.9551 4.0319 -0.0006 7 6 2.6281 3.4205 1.1934 8 6 2.7733 4.1734 2.4909 9 7 4.0222 3.7727 3.1523 10 6 4.1974 4.4876 4.4237 11 6 5.0917 3.6642 5.3527 12 6 4.8502 5.8458 4.1592 13 6 2.1648 2.1111 1.1976 14 8 1.8430 1.5072 2.3700 15 6 2.8264 0.8367 3.0033 16 1 3.8169 0.7984 2.5745 17 6 2.5665 0.1971 4.2057 18 7 1.3601 0.2441 4.7284 19 14 3.9292 -0.7313 5.0835 20 1 4.6365 0.1878 6.0109 21 1 3.3439 -1.8579 5.8540 22 1 4.8903 -1.2620 4.0837 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2587 1.5014 -2.1228 29 1 3.0823 3.8206 -2.1243 30 1 3.3146 5.0503 -0.0045 31 1 2.7965 5.2443 2.2889 32 1 1.9284 3.9443 3.1404 33 1 4.0530 2.7739 3.2923 34 1 3.2253 4.6370 4.8935 35 1 6.0638 3.5147 4.8829 36 1 5.2213 4.1944 6.2962 37 1 4.6266 2.6965 5.5411 38 1 4.9806 6.3762 5.1026 39 1 5.8224 5.6965 3.6894 40 1 4.2131 6.4324 3.4973 41 1 1.1782 -0.2037 5.5695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692172604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:01 Heat of formation + Delta-G solvation = -23.449687 kcal Electronic energy + Delta-G solvation = -20801.579454 eV Core-core repulsion = 17874.314971 eV Total energy + Delta-G solvation = -2927.264483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.38973 -36.57601 -36.14430 -33.64297 -32.07885 -31.39886 -28.78560 -28.29020 -26.87681 -24.93546 -24.18633 -23.09411 -20.78088 -20.01712 -19.70921 -17.88814 -16.42652 -15.63787 -15.11424 -14.93123 -14.50014 -14.19982 -13.96065 -13.70624 -13.10358 -13.00046 -12.77183 -12.30269 -12.06854 -11.82567 -11.74583 -11.65215 -11.54560 -11.48101 -11.30930 -11.06666 -10.86050 -10.68849 -10.53969 -10.42034 -10.29073 -10.18485 -9.65053 -9.58515 -8.25471 -8.06546 -7.72770 -7.53871 -6.14821 -3.82620 2.00494 2.08852 3.18382 3.24630 3.27213 4.10693 4.39777 4.97476 5.19000 5.36692 5.42178 5.43900 5.48094 5.55876 5.65632 5.80199 5.82783 5.94403 5.97292 6.06328 6.11724 6.13152 6.17985 6.22493 6.27548 6.35696 6.37710 6.51075 6.61442 6.66839 6.68690 6.78246 6.91807 6.99209 7.09791 7.22100 7.32619 7.47002 7.67013 7.77154 8.21262 8.25074 9.28854 10.07433 11.04170 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.010254 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.630977 B = 2729.893880 C = 4422.936308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.113 4.113 4 C -0.113 4.113 5 C -0.152 4.152 6 C -0.101 4.101 7 C -0.113 4.113 8 C 0.114 3.886 9 N -0.686 5.686 10 C 0.079 3.921 11 C -0.154 4.154 12 C -0.136 4.136 13 C 0.147 3.853 14 O -0.237 6.237 15 C -0.362 4.362 16 H 0.069 0.931 17 C 0.034 3.966 18 N -0.876 5.876 19 Si 0.916 3.084 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.364 0.636 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 5.504 -5.170 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.114 4.114 4 C -0.132 4.132 5 C -0.170 4.170 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.015 4.015 9 N -0.323 5.323 10 C -0.031 4.031 11 C -0.212 4.212 12 C -0.194 4.194 13 C 0.102 3.898 14 O -0.150 6.150 15 C -0.438 4.438 16 H 0.087 0.913 17 C -0.166 4.166 18 N -0.517 5.517 19 Si 0.742 3.258 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.188 0.812 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.819 5.854 -5.252 8.743 hybrid contribution 0.121 -0.890 0.851 1.237 sum 3.939 4.965 -4.401 7.716 Atomic orbital electron populations 1.21635 0.95345 1.00774 1.01647 1.20340 0.95816 0.92727 1.02388 1.20362 1.01281 0.96771 0.92960 1.20800 1.00624 0.94998 0.96757 1.20852 1.03667 0.95173 0.97357 1.20748 1.00087 0.99313 0.91786 1.20239 1.00612 0.95624 0.94972 1.20574 0.91723 0.96900 0.92281 1.60855 1.35248 1.13961 1.22216 1.21393 0.97549 0.94178 0.89997 1.21967 1.00231 1.00485 0.98524 1.21792 1.01017 0.96253 1.00309 1.18859 0.92589 0.90480 0.87901 1.83851 1.34866 1.66938 1.29322 1.20761 0.89332 1.30334 1.03401 0.91315 1.24950 0.97044 0.98123 0.96499 1.70015 1.19217 1.43337 1.19099 0.86096 0.80409 0.79474 0.79781 1.20191 1.20723 1.19591 0.91708 0.93961 0.93334 0.92837 0.89391 0.87083 0.87114 0.86945 0.92046 0.93664 0.81170 0.94192 0.92287 0.92689 0.92036 0.93359 0.92427 0.93243 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.90 37.16 0.37 -2.10 16 2 C -0.08 -1.46 5.79 -27.88 -0.16 -1.62 16 3 C -0.11 -2.31 5.15 -104.44 -0.54 -2.85 16 4 C -0.11 -1.98 9.68 -39.61 -0.38 -2.37 16 5 C -0.15 -2.51 10.04 -39.53 -0.40 -2.91 16 6 C -0.10 -1.78 9.66 -39.61 -0.38 -2.17 16 7 C -0.11 -2.34 5.41 -104.43 -0.56 -2.91 16 8 C 0.11 2.28 5.26 -4.97 -0.03 2.25 16 9 N -0.69 -13.61 6.30 -107.99 -0.68 -14.29 16 10 C 0.08 1.37 3.22 -67.71 -0.22 1.15 16 11 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 12 C -0.14 -1.94 9.41 37.16 0.35 -1.59 16 13 C 0.15 3.37 5.54 -39.11 -0.22 3.16 16 14 O -0.24 -6.28 8.25 0.04 0.00 -6.28 16 15 C -0.36 -9.57 6.73 30.89 0.21 -9.37 16 16 H 0.07 1.81 7.46 -52.49 -0.39 1.41 16 17 C 0.03 0.92 5.49 -17.52 -0.10 0.83 16 18 N -0.88 -25.32 13.67 55.48 0.76 -24.56 16 19 Si 0.92 20.68 29.55 -169.99 -5.02 15.66 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 23 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.88 8.05 -51.93 -0.42 0.47 16 27 H 0.09 1.96 7.01 -51.93 -0.36 1.59 16 28 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.11 1.73 8.03 -52.49 -0.42 1.31 16 31 H 0.06 1.08 7.30 -51.93 -0.38 0.70 16 32 H 0.05 1.02 7.77 -51.93 -0.40 0.62 16 33 H 0.36 8.12 5.45 -39.29 -0.21 7.91 16 34 H 0.04 0.74 7.80 -51.93 -0.40 0.33 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.69 7.45 -51.93 -0.39 0.30 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -28.52 335.42 -8.35 -36.87 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.75 Total: 10.24 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.72 Total: -22.70 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.08 Total: -38.85 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.00 Total: -6.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.52 -8.35 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692172604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.424 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds