Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47206 * 2 1 4 4 C 1.38117 * 120.03810 * 264.99939 * 3 2 1 5 5 C 1.38285 * 120.07201 * 179.97438 * 4 3 2 6 6 C 1.38326 * 120.13493 * 0.02562 * 5 4 3 7 7 C 1.38078 * 120.06908 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.03307 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.46949 * 259.98027 * 8 7 6 10 10 C 1.46899 * 110.99999 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47021 * 154.99908 * 10 9 8 12 12 C 1.53000 * 109.46843 * 274.99599 * 10 9 8 13 13 C 1.38862 * 120.03175 * 84.97618 * 3 2 1 14 14 O 1.35751 * 120.07154 * 0.04557 * 13 3 2 15 15 C 1.34830 * 116.99713 * 89.99560 * 14 13 3 16 16 H 1.07999 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.38655 * 119.99846 * 179.97438 * 15 14 13 18 18 N 1.31556 * 119.99697 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00216 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47228 * 90.00464 * 19 17 15 21 21 H 1.48499 * 109.47268 * 210.00464 * 19 17 15 22 22 H 1.48500 * 109.47278 * 330.00059 * 19 17 15 23 23 H 1.08998 * 109.47137 * 300.00355 * 1 2 3 24 24 H 1.09002 * 109.46874 * 59.99665 * 1 2 3 25 25 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46582 * 240.00102 * 2 1 3 27 27 H 1.09002 * 109.46874 * 120.00335 * 2 1 3 28 28 H 1.08000 * 119.96526 * 359.95602 * 4 3 2 29 29 H 1.08003 * 119.93218 * 179.72405 * 5 4 3 30 30 H 1.07997 * 119.96417 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47367 * 19.97481 * 8 7 6 32 32 H 1.08998 * 109.47378 * 139.98030 * 8 7 6 33 33 H 1.00902 * 111.00072 * 303.95321 * 9 8 7 34 34 H 1.08993 * 109.47459 * 34.99517 * 10 9 8 35 35 H 1.08993 * 109.47323 * 59.99525 * 11 10 9 36 36 H 1.09001 * 109.47038 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46905 * 299.99591 * 11 10 9 38 38 H 1.09006 * 109.47250 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47430 * 299.99832 * 12 10 9 40 40 H 1.08997 * 109.47242 * 60.00309 * 12 10 9 41 41 H 0.97010 * 119.99748 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1911 5 6 2.8216 3.3418 -1.1920 6 6 2.9551 4.0319 -0.0006 7 6 2.6281 3.4205 1.1934 8 6 2.7733 4.1734 2.4909 9 7 4.0222 3.7727 3.1523 10 6 4.1974 4.4876 4.4237 11 6 5.0917 3.6642 5.3527 12 6 4.8502 5.8458 4.1592 13 6 2.1648 2.1111 1.1976 14 8 1.8430 1.5072 2.3700 15 6 2.8264 0.8367 3.0033 16 1 3.8169 0.7984 2.5745 17 6 2.5665 0.1971 4.2057 18 7 1.3601 0.2441 4.7284 19 14 3.9292 -0.7313 5.0835 20 1 4.6365 0.1878 6.0109 21 1 3.3439 -1.8579 5.8540 22 1 4.8903 -1.2620 4.0837 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2587 1.5014 -2.1228 29 1 3.0823 3.8206 -2.1243 30 1 3.3146 5.0503 -0.0045 31 1 2.7965 5.2443 2.2889 32 1 1.9284 3.9443 3.1404 33 1 4.0530 2.7739 3.2923 34 1 3.2253 4.6370 4.8935 35 1 6.0638 3.5147 4.8829 36 1 5.2213 4.1944 6.2962 37 1 4.6266 2.6965 5.5411 38 1 4.9806 6.3762 5.1026 39 1 5.8224 5.6965 3.6894 40 1 4.2131 6.4324 3.4973 41 1 1.1782 -0.2037 5.5695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692172604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -39.932057 kcal Electronic energy + Delta-G solvation = -20802.294183 eV Core-core repulsion = 17874.314971 eV Total energy + Delta-G solvation = -2927.979212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97757 -38.02824 -37.90073 -35.12466 -34.04314 -32.92732 -30.25242 -29.83107 -28.13256 -26.92851 -25.71623 -24.63310 -22.30683 -21.45597 -21.19658 -19.80563 -18.23132 -17.19262 -16.63713 -16.39235 -16.16416 -15.83374 -15.42766 -15.32276 -14.73758 -14.55052 -14.26261 -13.82484 -13.49386 -13.41107 -13.30487 -13.23767 -12.99851 -12.90834 -12.80092 -12.56694 -12.36775 -12.27134 -12.17981 -12.00569 -11.79162 -11.67265 -11.39471 -11.27150 -10.26410 -9.55352 -9.28602 -9.12694 -8.20488 -5.91147 0.53158 0.58872 1.35750 1.38205 1.47923 2.27082 2.86466 3.11617 3.52325 3.90946 3.97735 3.99689 4.05482 4.15049 4.24737 4.38500 4.43961 4.49510 4.58248 4.64592 4.71307 4.73519 4.78999 4.83891 4.95044 4.97647 5.03935 5.05696 5.14933 5.18795 5.25113 5.28559 5.39563 5.42944 5.46558 5.67148 5.73924 5.94996 6.14731 6.20184 6.27371 6.50946 7.22981 8.16182 9.02147 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012956 B = 0.010254 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.630977 B = 2729.893880 C = 4422.936308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.136 4.136 6 C -0.100 4.100 7 C -0.131 4.131 8 C 0.122 3.878 9 N -0.685 5.685 10 C 0.070 3.930 11 C -0.150 4.150 12 C -0.125 4.125 13 C 0.097 3.903 14 O -0.268 6.268 15 C -0.346 4.346 16 H 0.063 0.937 17 C -0.021 4.021 18 N -0.927 5.927 19 Si 0.978 3.022 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.261 1.261 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.346 0.654 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 6.788 -7.525 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.111 4.111 3 C -0.131 4.131 4 C -0.127 4.127 5 C -0.154 4.154 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.007 4.007 9 N -0.320 5.320 10 C -0.039 4.039 11 C -0.208 4.208 12 C -0.182 4.182 13 C 0.053 3.947 14 O -0.182 6.182 15 C -0.423 4.423 16 H 0.081 0.919 17 C -0.216 4.216 18 N -0.570 5.570 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.185 1.185 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.165 0.835 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.106 0.894 32 H 0.020 0.980 33 H 0.167 0.833 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.750 7.168 -7.631 11.945 hybrid contribution -0.476 -1.188 1.428 1.918 sum 5.274 5.980 -6.203 10.102 Atomic orbital electron populations 1.21555 0.94680 1.01563 1.00769 1.20312 0.96417 0.92504 1.01845 1.20557 1.01901 0.97250 0.93357 1.21189 0.99145 0.95659 0.96720 1.21369 1.00947 0.94527 0.98530 1.21095 0.99132 1.00597 0.91025 1.20398 1.01427 0.95077 0.96342 1.20507 0.90247 0.98246 0.91707 1.60986 1.34723 1.12829 1.23437 1.21599 0.97205 0.95968 0.89147 1.21945 1.00020 0.99014 0.99787 1.21700 1.00751 0.94057 1.01740 1.19297 0.96073 0.91837 0.87520 1.83838 1.35654 1.67395 1.31298 1.20881 0.89152 1.29079 1.03157 0.91902 1.25879 0.99257 0.99240 0.97229 1.70169 1.21638 1.45431 1.19808 0.85150 0.77761 0.78196 0.78807 1.19003 1.20586 1.18510 0.95812 0.91404 0.91749 0.89504 0.93589 0.83521 0.82642 0.84065 0.89437 0.98020 0.83253 0.96205 0.91283 0.90020 0.95257 0.91022 0.91900 0.92934 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.90 71.98 0.71 -3.95 16 2 C -0.07 -2.85 5.79 29.85 0.17 -2.67 16 3 C -0.13 -5.25 5.15 -19.75 -0.10 -5.36 16 4 C -0.11 -3.44 9.68 22.25 0.22 -3.22 16 5 C -0.14 -3.88 10.04 22.30 0.22 -3.66 16 6 C -0.10 -3.27 9.66 22.25 0.22 -3.05 16 7 C -0.13 -5.44 5.41 -19.74 -0.11 -5.55 16 8 C 0.12 5.00 5.26 85.56 0.45 5.45 16 9 N -0.69 -27.70 6.30 -495.57 -3.12 -30.82 16 10 C 0.07 2.45 3.22 44.92 0.14 2.60 16 11 C -0.15 -4.93 9.18 71.98 0.66 -4.27 16 12 C -0.12 -3.31 9.41 71.98 0.68 -2.63 16 13 C 0.10 4.60 5.54 22.58 0.13 4.73 16 14 O -0.27 -15.18 8.25 -22.75 -0.19 -15.36 16 15 C -0.35 -19.34 6.73 67.92 0.46 -18.89 16 16 H 0.06 3.48 7.46 -2.91 -0.02 3.46 16 17 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 18 N -0.93 -56.88 13.67 21.61 0.30 -56.58 16 19 Si 0.98 44.01 29.55 68.60 2.03 46.03 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.09 2.71 8.05 -2.39 -0.02 2.69 16 27 H 0.05 2.14 7.01 -2.39 -0.02 2.13 16 28 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 30 H 0.14 3.75 8.03 -2.91 -0.02 3.73 16 31 H 0.09 3.03 7.30 -2.38 -0.02 3.01 16 32 H 0.00 0.08 7.77 -2.39 -0.02 0.06 16 33 H 0.35 16.12 5.45 -89.69 -0.49 15.64 16 34 H 0.02 0.76 7.80 -2.39 -0.02 0.74 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 38 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.35 7.45 -2.39 -0.02 1.33 16 41 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -67.26 335.42 3.83 -63.43 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.51 Total: 34.49 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 4.31 Total: -41.19 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.83 Total: -87.40 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.19 Total: -15.36 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.26 3.83 -63.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692172604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.498 kcal (2) G-P(sol) polarization free energy of solvation -67.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds