Wall clock time and date at job start Mon Mar 30 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38158 * 119.98327 * 2 1 4 4 C 1.38172 * 120.13171 * 180.23267 * 3 2 1 5 5 C 1.38817 * 120.09091 * 359.78850 * 4 3 2 6 6 O 1.35896 * 120.01608 * 179.97438 * 5 4 3 7 7 C 1.38569 * 119.96351 * 359.97438 * 5 4 3 8 8 C 1.38830 * 119.87327 * 359.97438 * 7 5 4 9 9 N 1.39675 * 120.04921 * 179.97438 * 8 7 5 10 10 C 1.46502 * 119.99286 * 0.02562 * 9 8 7 11 11 C 1.53004 * 109.46437 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47448 * 299.99899 * 11 10 9 13 13 C 1.53003 * 109.47337 * 60.00020 * 11 10 9 14 14 C 1.53005 * 109.46983 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47286 * 179.97438 * 14 11 10 16 16 H 1.08002 * 119.99866 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00200 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47416 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47474 * 120.00194 * 19 17 15 22 22 H 1.48501 * 109.47072 * 239.99895 * 19 17 15 23 23 H 1.09002 * 109.46989 * 270.23221 * 1 2 3 24 24 H 1.08996 * 109.47211 * 30.23168 * 1 2 3 25 25 H 1.08998 * 109.47028 * 150.23612 * 1 2 3 26 26 H 1.08003 * 119.93172 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.95729 * 179.76399 * 4 3 2 28 28 H 0.96695 * 114.00515 * 270.02144 * 6 5 4 29 29 H 1.08000 * 120.06396 * 180.02562 * 7 5 4 30 30 H 0.96995 * 120.00164 * 179.72581 * 9 8 7 31 31 H 1.08997 * 109.47359 * 299.99108 * 10 9 8 32 32 H 1.08997 * 109.47233 * 60.00377 * 10 9 8 33 33 H 1.09005 * 109.47269 * 60.00096 * 12 11 10 34 34 H 1.08998 * 109.47244 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.47045 * 299.99964 * 12 11 10 36 36 H 1.09005 * 109.46932 * 59.99796 * 13 11 10 37 37 H 1.08996 * 109.47200 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47248 * 300.00147 * 13 11 10 39 39 H 1.08992 * 109.47085 * 300.00258 * 14 11 10 40 40 H 1.08999 * 109.46457 * 60.00079 * 14 11 10 41 41 H 0.97005 * 120.00521 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5791 1.2003 -0.0049 5 6 4.2782 0.0010 -0.0053 6 8 5.6371 0.0063 -0.0106 7 6 3.5896 -1.2015 -0.0004 8 6 2.2013 -1.2033 0.0056 9 7 1.5035 -2.4133 0.0100 10 6 2.2368 -3.6816 0.0090 11 6 1.2431 -4.8450 0.0152 12 6 0.3688 -4.7624 1.2680 13 6 0.3581 -4.7665 -1.2304 14 6 2.0088 -6.1697 0.0135 15 6 1.0302 -7.3156 0.0202 16 1 -0.0318 -7.1188 0.0248 17 6 1.4904 -8.6152 0.0205 18 7 2.7834 -8.8549 0.0144 19 14 0.2772 -10.0357 0.0282 20 1 -1.1088 -9.5029 0.0337 21 1 0.4829 -10.8689 -1.1837 22 1 0.4933 -10.8646 1.2412 23 1 -0.3633 0.0042 1.0277 24 1 -0.3633 0.8879 -0.5174 25 1 -0.3633 -0.8921 -0.5102 26 1 1.6560 2.1312 -0.0004 27 1 4.1159 2.1374 -0.0087 28 1 6.0271 0.0065 -0.8955 29 1 4.1319 -2.1355 -0.0003 30 1 0.5336 -2.4138 0.0182 31 1 2.8599 -3.7404 -0.8834 32 1 2.8669 -3.7377 0.8966 33 1 -0.1767 -3.8187 1.2689 34 1 -0.3394 -5.5910 1.2722 35 1 0.9993 -4.8184 2.1554 36 1 0.9810 -4.8254 -2.1230 37 1 -0.3495 -5.5956 -1.2262 38 1 -0.1874 -3.8229 -1.2297 39 1 2.6314 -6.2283 -0.8792 40 1 2.6395 -6.2258 0.9007 41 1 3.1073 -9.7693 0.0143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692258509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:09 Heat of formation + Delta-G solvation = -40.822963 kcal Electronic energy + Delta-G solvation = -19824.697911 eV Core-core repulsion = 16896.680066 eV Total energy + Delta-G solvation = -2928.017845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90923 -37.94320 -36.76906 -34.02708 -32.27291 -31.76043 -29.21723 -27.06402 -26.52631 -26.32410 -25.70116 -23.11333 -21.51342 -21.22359 -18.71051 -17.92028 -16.49100 -16.12719 -15.90597 -15.27020 -14.71640 -14.49980 -14.31815 -14.03309 -13.65055 -13.48530 -12.99986 -12.91116 -12.59334 -12.48853 -12.09747 -11.73485 -11.59022 -11.36519 -11.17392 -11.04819 -10.85909 -10.67638 -10.49008 -10.39702 -10.25253 -10.02036 -9.66601 -9.23335 -8.94991 -8.49118 -8.39313 -7.17215 -6.03325 -4.04451 1.37340 1.69359 3.28031 3.36306 3.38716 3.67705 3.78841 4.36070 4.43352 4.90590 5.06730 5.21772 5.32529 5.38815 5.44763 5.57051 5.61582 5.67915 5.71691 5.77350 5.91331 6.05028 6.14506 6.15415 6.22087 6.35680 6.36646 6.57195 6.61087 6.62385 6.63844 6.81733 7.01346 7.04595 7.07995 7.49322 7.59540 7.71917 7.75832 7.95329 7.96117 8.37781 9.00424 9.59057 11.08211 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031296 B = 0.004122 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.476984 B = 6790.780316 C = 7481.056532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.181 4.181 3 C -0.058 4.058 4 C -0.213 4.213 5 C 0.145 3.855 6 O -0.503 6.503 7 C -0.224 4.224 8 C 0.242 3.758 9 N -0.734 5.734 10 C 0.130 3.870 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.388 0.612 29 H 0.129 0.871 30 H 0.400 0.600 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 17.859 -1.666 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.186 4.186 3 C -0.077 4.077 4 C -0.234 4.234 5 C 0.101 3.899 6 O -0.313 6.313 7 C -0.248 4.248 8 C 0.135 3.865 9 N -0.363 5.363 10 C 0.006 3.994 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.183 4.183 14 C -0.002 4.002 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.244 0.756 29 H 0.147 0.853 30 H 0.237 0.763 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.571 17.500 -1.059 17.602 hybrid contribution -0.686 -0.951 -0.477 1.266 sum -2.258 16.548 -1.535 16.772 Atomic orbital electron populations 1.20558 0.91502 1.02145 1.01771 1.19360 0.95758 0.91743 1.11746 1.20554 0.93310 0.96670 0.97184 1.21016 0.94318 0.97251 1.10784 1.18160 0.82252 0.91853 0.97677 1.84783 1.16601 1.96580 1.33317 1.20882 0.92632 0.98487 1.12757 1.17520 0.90757 0.86082 0.92128 1.45144 1.08523 1.02666 1.79942 1.21633 0.95058 0.82137 1.00580 1.20864 0.95322 0.95841 0.95083 1.21748 0.99654 0.99732 0.97234 1.21747 0.99607 0.99723 0.97257 1.19096 0.95011 0.88680 0.97365 1.21219 0.93005 0.90533 1.50147 0.92220 1.25005 0.94984 0.98966 0.95509 1.69968 1.12451 1.20037 1.50983 0.86595 0.81492 0.82702 0.77561 1.19794 1.21103 1.21101 0.91803 0.91749 0.92278 0.86169 0.86313 0.75602 0.85341 0.76275 0.92556 0.92514 0.95248 0.91500 0.93396 0.93431 0.91496 0.95274 0.96417 0.96397 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.56 36.00 0.34 -0.71 16 2 C -0.18 -2.29 5.90 -104.40 -0.62 -2.91 16 3 C -0.06 -0.68 9.69 -39.63 -0.38 -1.06 16 4 C -0.21 -2.60 9.98 -39.39 -0.39 -2.99 16 5 C 0.15 1.97 6.70 -39.25 -0.26 1.71 16 6 O -0.50 -6.16 13.50 -19.41 -0.26 -6.42 16 7 C -0.22 -3.30 9.25 -39.24 -0.36 -3.67 16 8 C 0.24 3.49 6.63 -83.81 -0.56 2.93 16 9 N -0.73 -10.73 5.03 -58.65 -0.30 -11.03 16 10 C 0.13 2.17 3.80 -4.04 -0.02 2.16 16 11 C -0.07 -1.33 0.54 -154.50 -0.08 -1.41 16 12 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 13 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 14 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 15 C -0.51 -13.48 7.65 -34.44 -0.26 -13.75 16 16 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 19 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 26 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 27 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.39 2.83 9.06 45.56 0.41 3.25 16 29 H 0.13 1.95 6.73 -52.49 -0.35 1.60 16 30 H 0.40 5.46 4.16 -40.82 -0.17 5.29 16 31 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 32 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 33 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 38 H 0.03 0.43 6.87 -51.93 -0.36 0.08 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -29.88 326.23 -7.62 -37.49 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.49 Total: 5.78 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.20 Total: -21.37 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.44 Total: -36.48 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.26 Total: -6.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.88 -7.62 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692258509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.330 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds