Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38158 * 119.98327 * 2 1 4 4 C 1.38172 * 120.13171 * 180.23267 * 3 2 1 5 5 C 1.38817 * 120.09091 * 359.78850 * 4 3 2 6 6 O 1.35896 * 120.01608 * 179.97438 * 5 4 3 7 7 C 1.38569 * 119.96351 * 359.97438 * 5 4 3 8 8 C 1.38830 * 119.87327 * 359.97438 * 7 5 4 9 9 N 1.39675 * 120.04921 * 179.97438 * 8 7 5 10 10 C 1.46502 * 119.99286 * 0.02562 * 9 8 7 11 11 C 1.53004 * 109.46437 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47448 * 299.99899 * 11 10 9 13 13 C 1.53003 * 109.47337 * 60.00020 * 11 10 9 14 14 C 1.53005 * 109.46983 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47286 * 179.97438 * 14 11 10 16 16 H 1.08002 * 119.99866 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00200 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47416 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47474 * 120.00194 * 19 17 15 22 22 H 1.48501 * 109.47072 * 239.99895 * 19 17 15 23 23 H 1.09002 * 109.46989 * 270.23221 * 1 2 3 24 24 H 1.08996 * 109.47211 * 30.23168 * 1 2 3 25 25 H 1.08998 * 109.47028 * 150.23612 * 1 2 3 26 26 H 1.08003 * 119.93172 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.95729 * 179.76399 * 4 3 2 28 28 H 0.96695 * 114.00515 * 270.02144 * 6 5 4 29 29 H 1.08000 * 120.06396 * 180.02562 * 7 5 4 30 30 H 0.96995 * 120.00164 * 179.72581 * 9 8 7 31 31 H 1.08997 * 109.47359 * 299.99108 * 10 9 8 32 32 H 1.08997 * 109.47233 * 60.00377 * 10 9 8 33 33 H 1.09005 * 109.47269 * 60.00096 * 12 11 10 34 34 H 1.08998 * 109.47244 * 179.97438 * 12 11 10 35 35 H 1.09002 * 109.47045 * 299.99964 * 12 11 10 36 36 H 1.09005 * 109.46932 * 59.99796 * 13 11 10 37 37 H 1.08996 * 109.47200 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47248 * 300.00147 * 13 11 10 39 39 H 1.08992 * 109.47085 * 300.00258 * 14 11 10 40 40 H 1.08999 * 109.46457 * 60.00079 * 14 11 10 41 41 H 0.97005 * 120.00521 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5791 1.2003 -0.0049 5 6 4.2782 0.0010 -0.0053 6 8 5.6371 0.0063 -0.0106 7 6 3.5896 -1.2015 -0.0004 8 6 2.2013 -1.2033 0.0056 9 7 1.5035 -2.4133 0.0100 10 6 2.2368 -3.6816 0.0090 11 6 1.2431 -4.8450 0.0152 12 6 0.3688 -4.7624 1.2680 13 6 0.3581 -4.7665 -1.2304 14 6 2.0088 -6.1697 0.0135 15 6 1.0302 -7.3156 0.0202 16 1 -0.0318 -7.1188 0.0248 17 6 1.4904 -8.6152 0.0205 18 7 2.7834 -8.8549 0.0144 19 14 0.2772 -10.0357 0.0282 20 1 -1.1088 -9.5029 0.0337 21 1 0.4829 -10.8689 -1.1837 22 1 0.4933 -10.8646 1.2412 23 1 -0.3633 0.0042 1.0277 24 1 -0.3633 0.8879 -0.5174 25 1 -0.3633 -0.8921 -0.5102 26 1 1.6560 2.1312 -0.0004 27 1 4.1159 2.1374 -0.0087 28 1 6.0271 0.0065 -0.8955 29 1 4.1319 -2.1355 -0.0003 30 1 0.5336 -2.4138 0.0182 31 1 2.8599 -3.7404 -0.8834 32 1 2.8669 -3.7377 0.8966 33 1 -0.1767 -3.8187 1.2689 34 1 -0.3394 -5.5910 1.2722 35 1 0.9993 -4.8184 2.1554 36 1 0.9810 -4.8254 -2.1230 37 1 -0.3495 -5.5956 -1.2262 38 1 -0.1874 -3.8229 -1.2297 39 1 2.6314 -6.2283 -0.8792 40 1 2.6395 -6.2258 0.9007 41 1 3.1073 -9.7693 0.0143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692258509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = -59.179154 kcal Electronic energy + Delta-G solvation = -19825.493895 eV Core-core repulsion = 16896.680066 eV Total energy + Delta-G solvation = -2928.813829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94267 -39.25474 -37.91390 -35.43021 -34.12570 -32.68675 -30.42386 -28.89039 -27.99627 -27.49898 -26.83926 -24.89897 -22.67279 -22.24259 -19.94815 -19.24874 -18.38930 -17.34497 -17.02904 -16.50873 -16.21193 -15.87744 -15.56451 -15.27851 -14.80227 -14.57573 -14.40931 -14.29081 -13.98231 -13.95292 -13.41821 -13.02305 -12.78691 -12.71321 -12.51317 -12.46662 -12.37206 -12.33748 -12.15494 -11.93223 -11.58553 -11.45515 -10.99801 -10.86414 -10.85269 -10.53231 -9.47545 -8.26027 -8.15734 -6.23151 0.39865 0.68792 1.40161 1.41637 1.53037 2.40839 2.53857 2.82056 3.18982 3.42790 3.95463 3.99733 4.07525 4.17468 4.21452 4.32854 4.52908 4.62401 4.70504 4.71804 4.81302 4.84572 4.88738 4.94133 4.97310 5.08915 5.11875 5.25881 5.38434 5.41080 5.46715 5.49305 5.53456 5.62035 5.65777 5.78288 5.87952 5.90533 6.26954 6.38215 6.87630 6.91910 6.92359 7.44695 8.96877 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031296 B = 0.004122 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.476984 B = 6790.780316 C = 7481.056532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.182 4.182 3 C -0.056 4.056 4 C -0.212 4.212 5 C 0.135 3.865 6 O -0.515 6.515 7 C -0.248 4.248 8 C 0.223 3.777 9 N -0.730 5.730 10 C 0.146 3.854 11 C -0.064 4.064 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.041 3.959 15 C -0.514 4.514 16 H 0.070 0.930 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.956 3.044 20 H -0.259 1.259 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.408 0.592 29 H 0.110 0.890 30 H 0.406 0.594 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.063 0.937 39 H -0.012 1.012 40 H -0.013 1.013 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 20.020 -1.814 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.187 4.187 3 C -0.074 4.074 4 C -0.232 4.232 5 C 0.090 3.910 6 O -0.328 6.328 7 C -0.272 4.272 8 C 0.118 3.882 9 N -0.361 5.361 10 C 0.022 3.978 11 C -0.065 4.065 12 C -0.177 4.177 13 C -0.177 4.177 14 C 0.004 3.996 15 C -0.552 4.552 16 H 0.088 0.912 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.782 3.218 20 H -0.183 1.183 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.171 0.829 27 H 0.157 0.843 28 H 0.267 0.733 29 H 0.128 0.872 30 H 0.245 0.755 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.007 0.993 40 H 0.005 0.995 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.733 19.695 -1.220 20.082 hybrid contribution 0.076 -1.509 -0.439 1.573 sum -3.657 18.185 -1.659 18.623 Atomic orbital electron populations 1.20625 0.89589 1.03187 1.02566 1.19703 0.97240 0.91190 1.10553 1.20958 0.93194 0.97623 0.95664 1.21313 0.94917 0.97376 1.09591 1.18319 0.82742 0.92025 0.97878 1.84725 1.16244 1.96551 1.35251 1.20941 0.93270 0.98484 1.14474 1.17699 0.90709 0.86539 0.93276 1.44840 1.08499 1.01838 1.80961 1.21208 0.94311 0.82805 0.99508 1.20675 0.95504 0.93669 0.96615 1.21668 0.99091 1.01001 0.95986 1.21663 0.99027 1.00991 0.95984 1.18963 0.94548 0.91708 0.94429 1.21617 0.93762 0.91154 1.48709 0.91238 1.25907 0.96632 1.02017 0.95442 1.70114 1.14550 1.20567 1.52615 0.85520 0.79732 0.79192 0.77358 1.18252 1.20923 1.21003 0.91040 0.89633 0.92350 0.82927 0.84327 0.73338 0.87150 0.75518 0.93580 0.93983 0.91841 0.92786 0.94439 0.94261 0.92823 0.91837 0.99321 0.99493 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.56 71.23 0.68 -1.06 16 2 C -0.18 -4.12 5.90 -19.72 -0.12 -4.24 16 3 C -0.06 -1.11 9.69 22.24 0.22 -0.90 16 4 C -0.21 -4.65 9.98 22.39 0.22 -4.43 16 5 C 0.14 3.56 6.70 22.49 0.15 3.71 16 6 O -0.51 -12.33 13.50 -92.38 -1.25 -13.58 16 7 C -0.25 -7.39 9.25 22.49 0.21 -7.18 16 8 C 0.22 6.21 6.63 38.20 0.25 6.46 16 9 N -0.73 -20.65 5.03 -339.46 -1.71 -22.36 16 10 C 0.15 5.04 3.80 86.38 0.33 5.36 16 11 C -0.06 -2.44 0.54 -52.18 -0.03 -2.47 16 12 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 13 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 14 C 0.04 2.07 4.04 29.85 0.12 2.19 16 15 C -0.51 -27.62 7.65 25.60 0.20 -27.42 16 16 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.94 -56.63 13.29 21.44 0.28 -56.34 16 19 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 24 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 25 H 0.06 1.00 6.55 -2.39 -0.02 0.98 16 26 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 27 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.41 5.70 9.06 -74.06 -0.67 5.03 16 29 H 0.11 3.57 6.73 -2.91 -0.02 3.55 16 30 H 0.41 10.14 4.16 -92.71 -0.39 9.76 16 31 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 32 H 0.04 1.55 7.95 -2.39 -0.02 1.53 16 33 H 0.06 1.77 6.86 -2.38 -0.02 1.76 16 34 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.05 1.98 6.62 -2.39 -0.02 1.97 16 38 H 0.06 1.74 6.87 -2.39 -0.02 1.73 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -65.75 326.23 3.19 -62.56 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.02 Total: 20.90 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.85 Total: -36.82 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.42 Total: -78.70 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.25 Total: -13.58 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -65.75 3.19 -62.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692258509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.385 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds