Wall clock time and date at job start Mon Mar 30 2020 06:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38288 * 119.94307 * 2 1 4 4 C 1.38122 * 120.05973 * 180.02562 * 3 2 1 5 5 C 1.38749 * 119.94058 * 359.97438 * 4 3 2 6 6 O 1.35908 * 120.05705 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99672 * 5.40179 * 6 5 4 8 8 H 1.09002 * 109.46937 * 35.19633 * 7 6 5 9 9 C 1.52992 * 109.47690 * 275.19270 * 7 6 5 10 10 C 1.53001 * 109.46941 * 155.18813 * 7 6 5 11 11 C 1.50700 * 109.47170 * 295.00364 * 10 7 6 12 12 H 1.07998 * 120.00288 * 359.97438 * 11 10 7 13 13 C 1.37878 * 120.00183 * 179.72585 * 11 10 7 14 14 N 1.31520 * 119.99527 * 0.27351 * 13 11 10 15 15 Si 1.86799 * 120.00301 * 180.27560 * 13 11 10 16 16 H 1.48495 * 109.46887 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47105 * 119.99820 * 15 13 11 18 18 H 1.48498 * 109.47117 * 239.99623 * 15 13 11 19 19 C 1.38709 * 119.89163 * 0.27599 * 5 4 3 20 20 C 1.50705 * 120.03266 * 179.72769 * 19 5 4 21 21 C 1.52993 * 109.47173 * 84.99824 * 20 19 5 22 22 N 1.46900 * 109.46954 * 180.02562 * 21 20 19 23 23 C 1.38168 * 119.94144 * 359.44923 * 19 5 4 24 24 H 1.08995 * 109.47172 * 90.00099 * 1 2 3 25 25 H 1.09008 * 109.46791 * 210.00060 * 1 2 3 26 26 H 1.08998 * 109.47506 * 330.00045 * 1 2 3 27 27 H 1.08009 * 119.97325 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.03266 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47597 * 180.02562 * 9 7 6 30 30 H 1.08999 * 109.46765 * 299.99969 * 9 7 6 31 31 H 1.08993 * 109.47400 * 59.99737 * 9 7 6 32 32 H 1.09003 * 109.47169 * 175.00630 * 10 7 6 33 33 H 1.08997 * 109.47115 * 55.00127 * 10 7 6 34 34 H 0.97002 * 119.99639 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47104 * 205.00422 * 20 19 5 36 36 H 1.09003 * 109.46570 * 324.99689 * 20 19 5 37 37 H 1.09010 * 109.47322 * 300.00163 * 21 20 19 38 38 H 1.09003 * 109.47482 * 60.00424 * 21 20 19 39 39 H 1.00905 * 110.99615 * 180.02562 * 22 21 20 40 40 H 1.00905 * 110.99923 * 303.94625 * 22 21 20 41 41 H 1.08005 * 119.97465 * 180.27698 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2011 -0.0005 5 6 4.2734 0.0002 -0.0005 6 8 5.6325 0.0002 -0.0005 7 6 6.2811 1.2678 0.1193 8 1 5.6977 1.9139 0.7754 9 6 6.3964 1.9146 -1.2624 10 6 7.6793 1.0715 0.7088 11 6 7.5618 0.5489 2.1174 12 1 6.5873 0.3747 2.5492 13 6 8.6983 0.2883 2.8532 14 7 9.8850 0.5010 2.3275 15 14 8.5528 -0.3667 4.5965 16 1 7.1185 -0.5176 4.9503 17 1 9.2271 -1.6867 4.6872 18 1 9.1970 0.5840 5.5379 19 6 3.5788 -1.2004 -0.0058 20 6 4.3304 -2.5067 -0.0120 21 6 4.6942 -2.8925 1.4231 22 7 5.4274 -4.1655 1.4169 23 6 2.1971 -1.1978 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6558 2.1329 -0.0004 28 1 4.1170 2.1372 -0.0010 29 1 6.8916 2.8813 -1.1710 30 1 6.9798 1.2685 -1.9184 31 1 5.4004 2.0544 -1.6823 32 1 8.2070 2.0252 0.7180 33 1 8.2327 0.3558 0.1008 34 1 10.6846 0.3173 2.8450 35 1 3.7042 -3.2841 -0.4497 36 1 5.2410 -2.3989 -0.6013 37 1 5.3205 -2.1150 1.8608 38 1 3.7836 -3.0002 2.0124 39 1 5.6789 -4.4424 2.3540 40 1 4.8934 -4.8881 0.9577 41 1 1.6557 -2.1324 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695907113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:29 Heat of formation + Delta-G solvation = -39.841378 kcal Electronic energy + Delta-G solvation = -20248.131706 eV Core-core repulsion = 17320.156426 eV Total energy + Delta-G solvation = -2927.975280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98130 -37.51009 -35.34924 -33.53031 -32.20784 -31.23840 -31.09651 -27.48709 -27.42041 -25.97082 -23.32621 -22.79383 -21.98957 -20.08468 -19.77558 -17.52646 -16.34626 -15.93510 -15.56609 -14.90380 -14.57652 -14.46729 -14.24379 -14.15653 -13.50311 -13.37067 -13.16796 -12.62939 -12.54311 -12.20104 -12.02766 -11.89156 -11.62680 -11.45620 -11.34787 -11.20045 -10.85758 -10.75682 -10.61426 -10.50700 -10.29455 -9.91264 -9.33972 -9.06298 -8.56192 -8.39320 -8.35664 -7.49682 -5.98618 -3.99213 1.59875 1.76745 3.33219 3.40632 3.44677 3.93136 4.05197 4.48538 4.76201 5.00760 5.08131 5.23619 5.39046 5.40160 5.42394 5.59924 5.61897 5.63895 5.65583 5.70911 5.79779 5.87632 5.92675 5.95650 6.06955 6.20201 6.27221 6.45367 6.53785 6.58922 6.64848 6.79156 6.82561 6.89992 7.13957 7.39781 7.53151 7.63733 7.69058 7.97949 8.20637 8.40147 9.03934 9.63799 11.13063 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.006493 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.562545 B = 4311.023103 C = 5095.343577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.144 4.144 3 C -0.083 4.083 4 C -0.211 4.211 5 C 0.152 3.848 6 O -0.284 6.284 7 C 0.086 3.914 8 H 0.061 0.939 9 C -0.177 4.177 10 C 0.026 3.974 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.896 5.896 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.285 1.285 19 C -0.122 4.122 20 C -0.063 4.063 21 C 0.067 3.933 22 N -0.847 5.847 23 C -0.081 4.081 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.130 0.870 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.341 0.659 40 H 0.331 0.669 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.661 -2.445 -5.043 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.144 4.144 3 C -0.102 4.102 4 C -0.230 4.230 5 C 0.104 3.896 6 O -0.196 6.196 7 C 0.031 3.969 8 H 0.079 0.921 9 C -0.235 4.235 10 C -0.011 4.011 11 C -0.547 4.547 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.718 3.282 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.212 1.212 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.063 4.063 22 N -0.376 5.376 23 C -0.099 4.099 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.035 0.965 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.766 -2.213 -5.442 15.892 hybrid contribution -0.818 -0.388 1.578 1.819 sum -15.584 -2.601 -3.865 16.266 Atomic orbital electron populations 1.20633 0.91703 1.02061 1.01528 1.19627 0.95615 0.93093 1.06097 1.20731 0.93401 0.97201 0.98834 1.21348 0.95021 0.97749 1.08887 1.19038 0.84400 0.93009 0.93118 1.86299 1.13922 1.33786 1.85598 1.22858 0.97154 0.82168 0.94763 0.92128 1.22412 1.01270 1.01351 0.98457 1.19259 0.87556 0.98229 0.96022 1.21104 0.92467 1.43142 0.97973 0.92714 1.24950 0.95358 0.95676 0.98210 1.69959 0.97327 1.49184 1.37100 0.86556 0.78066 0.78702 0.84828 1.19865 1.20902 1.21164 1.19144 0.92916 0.93376 1.06925 1.20291 0.99946 0.92487 0.97329 1.21787 0.95890 0.92549 0.96088 1.58640 1.49248 1.05381 1.24283 1.20634 0.92439 0.97289 0.99510 0.92008 0.92184 0.92143 0.86550 0.85246 0.91484 0.91927 0.93347 0.94525 0.95232 0.93057 0.92314 0.89599 0.89414 0.96452 0.84714 0.85762 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.14 -1.93 5.88 -104.60 -0.62 -2.55 16 3 C -0.08 -1.18 9.69 -39.61 -0.38 -1.57 16 4 C -0.21 -3.49 8.24 -39.44 -0.32 -3.81 16 5 C 0.15 2.81 6.57 -39.22 -0.26 2.55 16 6 O -0.28 -6.04 8.69 -19.45 -0.17 -6.21 16 7 C 0.09 1.80 2.17 -26.73 -0.06 1.74 16 8 H 0.06 1.24 6.32 -51.93 -0.33 0.91 16 9 C -0.18 -3.06 9.17 37.15 0.34 -2.72 16 10 C 0.03 0.67 4.68 -27.88 -0.13 0.54 16 11 C -0.51 -14.37 8.88 -34.44 -0.31 -14.67 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C -0.12 -2.02 5.15 -104.47 -0.54 -2.56 16 20 C -0.06 -1.00 5.33 -27.88 -0.15 -1.15 16 21 C 0.07 1.11 6.77 -3.83 -0.03 1.08 16 22 N -0.85 -12.56 9.62 -10.37 -0.10 -12.66 16 23 C -0.08 -1.14 9.33 -39.61 -0.37 -1.51 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.54 8.08 -51.92 -0.42 0.12 16 26 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.13 2.05 5.43 -52.49 -0.28 1.77 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.75 6.90 -51.93 -0.36 0.39 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.09 1.56 7.69 -51.93 -0.40 1.16 16 37 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 38 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.34 4.63 9.08 -39.29 -0.36 4.28 16 40 H 0.33 3.96 8.99 -39.29 -0.35 3.61 16 41 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -30.91 337.57 -8.70 -39.61 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.68 Total: 7.01 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -2.55 Total: -23.69 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.64 Total: -38.81 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.17 Total: -6.21 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.91 -8.70 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695907113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.230 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds