Wall clock time and date at job start Mon Mar 30 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38288 * 119.94307 * 2 1 4 4 C 1.38122 * 120.05973 * 180.02562 * 3 2 1 5 5 C 1.38749 * 119.94058 * 359.97438 * 4 3 2 6 6 O 1.35908 * 120.05705 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99672 * 5.40179 * 6 5 4 8 8 H 1.09002 * 109.46937 * 35.19633 * 7 6 5 9 9 C 1.52992 * 109.47690 * 275.19270 * 7 6 5 10 10 C 1.53001 * 109.46941 * 155.18813 * 7 6 5 11 11 C 1.50700 * 109.47170 * 295.00364 * 10 7 6 12 12 H 1.07998 * 120.00288 * 359.97438 * 11 10 7 13 13 C 1.37878 * 120.00183 * 179.72585 * 11 10 7 14 14 N 1.31520 * 119.99527 * 0.27351 * 13 11 10 15 15 Si 1.86799 * 120.00301 * 180.27560 * 13 11 10 16 16 H 1.48495 * 109.46887 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47105 * 119.99820 * 15 13 11 18 18 H 1.48498 * 109.47117 * 239.99623 * 15 13 11 19 19 C 1.38709 * 119.89163 * 0.27599 * 5 4 3 20 20 C 1.50705 * 120.03266 * 179.72769 * 19 5 4 21 21 C 1.52993 * 109.47173 * 84.99824 * 20 19 5 22 22 N 1.46900 * 109.46954 * 180.02562 * 21 20 19 23 23 C 1.38168 * 119.94144 * 359.44923 * 19 5 4 24 24 H 1.08995 * 109.47172 * 90.00099 * 1 2 3 25 25 H 1.09008 * 109.46791 * 210.00060 * 1 2 3 26 26 H 1.08998 * 109.47506 * 330.00045 * 1 2 3 27 27 H 1.08009 * 119.97325 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.03266 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47597 * 180.02562 * 9 7 6 30 30 H 1.08999 * 109.46765 * 299.99969 * 9 7 6 31 31 H 1.08993 * 109.47400 * 59.99737 * 9 7 6 32 32 H 1.09003 * 109.47169 * 175.00630 * 10 7 6 33 33 H 1.08997 * 109.47115 * 55.00127 * 10 7 6 34 34 H 0.97002 * 119.99639 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47104 * 205.00422 * 20 19 5 36 36 H 1.09003 * 109.46570 * 324.99689 * 20 19 5 37 37 H 1.09010 * 109.47322 * 300.00163 * 21 20 19 38 38 H 1.09003 * 109.47482 * 60.00424 * 21 20 19 39 39 H 1.00905 * 110.99615 * 180.02562 * 22 21 20 40 40 H 1.00905 * 110.99923 * 303.94625 * 22 21 20 41 41 H 1.08005 * 119.97465 * 180.27698 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5784 1.2011 -0.0005 5 6 4.2734 0.0002 -0.0005 6 8 5.6325 0.0002 -0.0005 7 6 6.2811 1.2678 0.1193 8 1 5.6977 1.9139 0.7754 9 6 6.3964 1.9146 -1.2624 10 6 7.6793 1.0715 0.7088 11 6 7.5618 0.5489 2.1174 12 1 6.5873 0.3747 2.5492 13 6 8.6983 0.2883 2.8532 14 7 9.8850 0.5010 2.3275 15 14 8.5528 -0.3667 4.5965 16 1 7.1185 -0.5176 4.9503 17 1 9.2271 -1.6867 4.6872 18 1 9.1970 0.5840 5.5379 19 6 3.5788 -1.2004 -0.0058 20 6 4.3304 -2.5067 -0.0120 21 6 4.6942 -2.8925 1.4231 22 7 5.4274 -4.1655 1.4169 23 6 2.1971 -1.1978 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6558 2.1329 -0.0004 28 1 4.1170 2.1372 -0.0010 29 1 6.8916 2.8813 -1.1710 30 1 6.9798 1.2685 -1.9184 31 1 5.4004 2.0544 -1.6823 32 1 8.2070 2.0252 0.7180 33 1 8.2327 0.3558 0.1008 34 1 10.6846 0.3173 2.8450 35 1 3.7042 -3.2841 -0.4497 36 1 5.2410 -2.3989 -0.6013 37 1 5.3205 -2.1150 1.8608 38 1 3.7836 -3.0002 2.0124 39 1 5.6789 -4.4424 2.3540 40 1 4.8934 -4.8881 0.9577 41 1 1.6557 -2.1324 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695907113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:28 Heat of formation + Delta-G solvation = -59.049814 kcal Electronic energy + Delta-G solvation = -20248.964647 eV Core-core repulsion = 17320.156426 eV Total energy + Delta-G solvation = -2928.808220 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29306 -38.88236 -36.58345 -35.47426 -33.75702 -32.67878 -32.32013 -29.38124 -28.60330 -27.08455 -25.23077 -24.11321 -23.35759 -21.46149 -21.16236 -18.95070 -18.51862 -17.25575 -16.89357 -16.46571 -16.20579 -15.84612 -15.51830 -15.43393 -14.77083 -14.66633 -14.32769 -14.12090 -13.80006 -13.67980 -13.51632 -13.40358 -13.14725 -13.07928 -12.69486 -12.67578 -12.42055 -12.36217 -12.21886 -11.89086 -11.69587 -11.56884 -11.23714 -11.00774 -10.58935 -9.73389 -9.59222 -8.76329 -8.21025 -6.28982 0.42851 0.57535 1.34962 1.36591 1.48556 2.39132 2.52048 2.83550 3.14166 3.59974 3.89848 3.97973 4.05147 4.15145 4.22484 4.23769 4.35668 4.39949 4.48172 4.49400 4.56539 4.69870 4.83549 4.86418 4.94400 5.00109 5.01514 5.16059 5.16630 5.19808 5.31383 5.38414 5.46958 5.53379 5.66081 5.73644 5.76303 6.05171 6.19534 6.22753 6.65361 6.75834 6.82680 7.37987 8.91192 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.006493 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.562545 B = 4311.023103 C = 5095.343577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.136 4.136 3 C -0.087 4.087 4 C -0.221 4.221 5 C 0.111 3.889 6 O -0.313 6.313 7 C 0.095 3.905 8 H 0.061 0.939 9 C -0.166 4.166 10 C 0.030 3.970 11 C -0.522 4.522 12 H 0.047 0.953 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.957 3.043 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.274 1.274 19 C -0.135 4.135 20 C -0.056 4.056 21 C 0.076 3.924 22 N -0.858 5.858 23 C -0.080 4.080 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.023 0.977 33 H -0.004 1.004 34 H 0.263 0.737 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.347 0.653 40 H 0.350 0.650 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 -2.930 -4.733 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.240 4.240 5 C 0.065 3.935 6 O -0.227 6.227 7 C 0.039 3.961 8 H 0.079 0.921 9 C -0.223 4.223 10 C -0.007 4.007 11 C -0.560 4.560 12 H 0.065 0.935 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.782 3.218 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.199 1.199 19 C -0.137 4.137 20 C -0.094 4.094 21 C -0.055 4.055 22 N -0.389 5.389 23 C -0.098 4.098 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.995 -2.702 -5.141 18.910 hybrid contribution 0.073 -0.268 1.451 1.478 sum -17.922 -2.970 -3.690 18.538 Atomic orbital electron populations 1.20711 0.88708 1.03431 1.02919 1.20125 0.97735 0.92374 1.03353 1.21096 0.92471 0.99002 0.97917 1.21469 0.96272 0.96976 1.09245 1.19398 0.83199 0.94798 0.96064 1.86212 1.16095 1.33541 1.86839 1.22522 0.94344 0.82691 0.96524 0.92065 1.22296 1.02590 1.01335 0.96117 1.19090 0.90387 0.96274 0.94900 1.21378 0.92213 1.43122 0.99254 0.93473 1.25807 0.94981 0.95894 1.02530 1.70073 0.98047 1.50172 1.38834 0.85519 0.78254 0.78246 0.79788 1.19355 1.20384 1.19926 1.19382 0.94133 0.92804 1.07335 1.20217 0.99139 0.93517 0.96510 1.21572 0.95597 0.91874 0.96460 1.58555 1.49765 1.05481 1.25125 1.20983 0.91313 0.99083 0.98432 0.90451 0.90789 0.90928 0.83786 0.85349 0.90148 0.92684 0.91171 0.95861 0.98573 0.92765 0.89112 0.92858 0.94365 0.94568 0.83997 0.83628 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.14 -3.17 5.88 -19.85 -0.12 -3.28 16 3 C -0.09 -2.24 9.69 22.25 0.22 -2.03 16 4 C -0.22 -7.15 8.24 22.36 0.18 -6.97 16 5 C 0.11 4.19 6.57 22.50 0.15 4.34 16 6 O -0.31 -14.03 8.69 -92.52 -0.80 -14.84 16 7 C 0.09 4.14 2.17 30.59 0.07 4.21 16 8 H 0.06 2.61 6.32 -2.39 -0.02 2.59 16 9 C -0.17 -5.84 9.17 71.98 0.66 -5.18 16 10 C 0.03 1.65 4.68 29.85 0.14 1.79 16 11 C -0.52 -30.76 8.88 25.60 0.23 -30.53 16 12 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 15 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 C -0.14 -4.39 5.15 -19.77 -0.10 -4.50 16 20 C -0.06 -1.78 5.33 29.85 0.16 -1.62 16 21 C 0.08 2.51 6.77 86.30 0.58 3.09 16 22 N -0.86 -25.12 9.62 -186.71 -1.80 -26.91 16 23 C -0.08 -2.04 9.33 22.25 0.21 -1.83 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 0.96 8.08 -2.38 -0.02 0.94 16 26 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 27 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.13 4.05 5.43 -2.91 -0.02 4.03 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.14 6.90 -2.39 -0.02 2.12 16 32 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.09 2.22 8.05 -2.39 -0.02 2.20 16 36 H 0.05 2.02 7.69 -2.39 -0.02 2.00 16 37 H 0.04 1.63 8.14 -2.38 -0.02 1.62 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.35 9.29 9.08 -89.69 -0.81 8.47 16 40 H 0.35 7.86 8.99 -89.69 -0.81 7.05 16 41 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -69.94 337.57 2.66 -67.28 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.60 Total: 26.17 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 3.55 Total: -42.54 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.51 Total: -84.21 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.80 Total: -14.84 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -69.94 2.66 -67.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695907113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.228 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds