Wall clock time and date at job start Mon Mar 30 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38295 * 119.94158 * 2 1 4 4 C 1.38126 * 120.05418 * 179.70517 * 3 2 1 5 5 C 1.38756 * 119.93942 * 0.59066 * 4 3 2 6 6 O 1.35896 * 120.05084 * 179.70595 * 5 4 3 7 7 C 1.42902 * 117.00633 * 354.51446 * 6 5 4 8 8 H 1.09001 * 109.46422 * 324.96834 * 7 6 5 9 9 C 1.53003 * 109.47257 * 84.95914 * 7 6 5 10 10 C 1.52989 * 109.47611 * 204.96667 * 7 6 5 11 11 C 1.50698 * 109.47435 * 64.99498 * 10 7 6 12 12 H 1.07995 * 119.99935 * 0.02562 * 11 10 7 13 13 C 1.37880 * 120.00324 * 179.97438 * 11 10 7 14 14 N 1.31524 * 119.99793 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00256 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47089 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46961 * 120.00365 * 15 13 11 18 18 H 1.48493 * 109.47126 * 240.00563 * 15 13 11 19 19 C 1.38706 * 119.89034 * 359.42720 * 5 4 3 20 20 C 1.50700 * 120.02654 * 180.29818 * 19 5 4 21 21 C 1.53002 * 109.47024 * 85.00285 * 20 19 5 22 22 N 1.46901 * 109.46899 * 179.97438 * 21 20 19 23 23 C 1.38164 * 119.94453 * 0.27513 * 19 5 4 24 24 H 1.09005 * 109.47133 * 269.97990 * 1 2 3 25 25 H 1.09003 * 109.47089 * 29.98028 * 1 2 3 26 26 H 1.08992 * 109.47176 * 149.98101 * 1 2 3 27 27 H 1.07998 * 119.97197 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.02717 * 180.31640 * 4 3 2 29 29 H 1.09001 * 109.46753 * 60.00280 * 9 7 6 30 30 H 1.08998 * 109.47573 * 180.02562 * 9 7 6 31 31 H 1.08998 * 109.47054 * 300.01242 * 9 7 6 32 32 H 1.09004 * 109.47106 * 304.99457 * 10 7 6 33 33 H 1.09004 * 109.47569 * 185.00162 * 10 7 6 34 34 H 0.96997 * 119.99614 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.47211 * 205.00319 * 20 19 5 36 36 H 1.09002 * 109.47542 * 325.00314 * 20 19 5 37 37 H 1.09001 * 109.46825 * 299.99641 * 21 20 19 38 38 H 1.09001 * 109.47352 * 59.99995 * 21 20 19 39 39 H 1.00904 * 111.00339 * 179.97438 * 22 21 20 40 40 H 1.00904 * 111.00037 * 303.95426 * 22 21 20 41 41 H 1.08001 * 119.96945 * 179.97438 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1984 0.0000 4 6 3.5785 1.2011 0.0062 5 6 4.2734 0.0001 -0.0001 6 8 5.6324 0.0002 -0.0001 7 6 6.2812 1.2682 -0.1152 8 1 5.6964 1.9176 -0.7666 9 6 6.3999 1.9080 1.2695 10 6 7.6778 1.0745 -0.7089 11 6 7.5569 0.5589 -2.1198 12 1 6.5814 0.3870 -2.5501 13 6 8.6916 0.3076 -2.8617 14 7 9.8796 0.5174 -2.3378 15 14 8.5417 -0.3307 -4.6108 16 1 7.1065 -0.4810 -4.9616 17 1 9.1812 0.6303 -5.5450 18 1 9.2180 -1.6485 -4.7165 19 6 3.5788 -1.2005 -0.0004 20 6 4.3304 -2.5066 -0.0004 21 6 4.6932 -2.8862 1.4367 22 7 5.4254 -4.1597 1.4368 23 6 2.1971 -1.1978 -0.0003 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5141 27 1 1.6559 2.1328 -0.0004 28 1 4.1171 2.1372 0.0113 29 1 6.9846 1.2585 1.9209 30 1 6.8944 2.8754 1.1817 31 1 5.4048 2.0460 1.6925 32 1 8.2326 0.3557 -0.1058 33 1 8.2058 2.0281 -0.7145 34 1 10.6779 0.3410 -2.8598 35 1 3.7045 -3.2860 -0.4350 36 1 5.2415 -2.4017 -0.5895 37 1 5.3192 -2.1068 1.8713 38 1 3.7822 -2.9912 2.0259 39 1 5.6770 -4.4322 2.3752 40 1 4.8911 -4.8840 0.9806 41 1 1.6558 -2.1324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695907116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:31 Heat of formation + Delta-G solvation = -59.299170 kcal Electronic energy + Delta-G solvation = -20117.780083 eV Core-core repulsion = 17188.961049 eV Total energy + Delta-G solvation = -2928.819033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29477 -38.88609 -36.58888 -35.47541 -33.76503 -32.68263 -32.32123 -29.38840 -28.60758 -27.08580 -25.23718 -24.08989 -23.38998 -21.43816 -21.18828 -18.93286 -18.53084 -17.26302 -16.90795 -16.46400 -16.17408 -15.93640 -15.52346 -15.36241 -14.82042 -14.53978 -14.40109 -14.14277 -13.80664 -13.68850 -13.50770 -13.41688 -13.27126 -12.91343 -12.69755 -12.68184 -12.48377 -12.32685 -12.20628 -11.91348 -11.71264 -11.56813 -11.24337 -11.00951 -10.59603 -9.73289 -9.57855 -8.76605 -8.21834 -6.30339 0.42791 0.57408 1.35584 1.37318 1.49843 2.39182 2.52183 2.83440 3.12917 3.58975 3.89358 3.97899 4.05343 4.14570 4.22545 4.23407 4.33393 4.39591 4.48500 4.49937 4.56110 4.69329 4.83323 4.86424 4.94036 4.99774 5.00817 5.14453 5.15873 5.19437 5.31696 5.38765 5.46597 5.53136 5.65658 5.73459 5.75774 6.04972 6.18826 6.25184 6.65078 6.75595 6.81970 7.36920 8.90231 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.005959 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.101173 B = 4697.437672 C = 5097.596906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.135 4.135 3 C -0.087 4.087 4 C -0.221 4.221 5 C 0.111 3.889 6 O -0.313 6.313 7 C 0.095 3.905 8 H 0.061 0.939 9 C -0.165 4.165 10 C 0.030 3.970 11 C -0.526 4.526 12 H 0.047 0.953 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.958 3.042 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.278 1.278 19 C -0.134 4.134 20 C -0.064 4.064 21 C 0.082 3.918 22 N -0.862 5.862 23 C -0.081 4.081 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.069 0.931 32 H -0.004 1.004 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.351 0.649 40 H 0.349 0.651 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.800 -2.911 7.660 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.239 4.239 5 C 0.065 3.935 6 O -0.227 6.227 7 C 0.039 3.961 8 H 0.079 0.921 9 C -0.222 4.222 10 C -0.007 4.007 11 C -0.564 4.564 12 H 0.065 0.935 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.783 3.217 16 H -0.194 1.194 17 H -0.197 1.197 18 H -0.204 1.204 19 C -0.135 4.135 20 C -0.101 4.101 21 C -0.049 4.049 22 N -0.394 5.394 23 C -0.099 4.099 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.015 0.985 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.926 -2.686 7.215 19.510 hybrid contribution 0.045 -0.280 -0.351 0.451 sum -17.881 -2.966 6.865 19.382 Atomic orbital electron populations 1.20712 0.88699 1.03447 1.02911 1.20125 0.97737 0.92362 1.03330 1.21099 0.92470 0.98999 0.97932 1.21472 0.96270 0.96966 1.09216 1.19391 0.83198 0.94786 0.96108 1.86213 1.16099 1.33500 1.86844 1.22524 0.94323 0.82714 0.96549 0.92077 1.22288 1.02582 1.01338 0.96026 1.19088 0.90460 0.96286 0.94816 1.21420 0.92306 1.43568 0.99152 0.93458 1.25837 0.94964 0.95819 1.02713 1.70073 0.98068 1.50176 1.38743 0.85499 0.78291 0.78241 0.79664 1.19387 1.19727 1.20369 1.19366 0.94122 0.92772 1.07291 1.20269 0.99033 0.93509 0.97332 1.21529 0.95924 0.91869 0.95558 1.58544 1.50072 1.05546 1.25223 1.20972 0.91308 0.99073 0.98517 0.90443 0.90912 0.90800 0.83767 0.85334 0.92697 0.90151 0.91160 0.98542 0.95830 0.92699 0.89688 0.93498 0.93480 0.94008 0.83567 0.83749 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.01 71.24 0.71 -0.83 16 2 C -0.14 -3.17 5.88 -19.85 -0.12 -3.29 16 3 C -0.09 -2.25 9.69 22.26 0.22 -2.04 16 4 C -0.22 -7.16 8.24 22.37 0.18 -6.97 16 5 C 0.11 4.19 6.57 22.51 0.15 4.34 16 6 O -0.31 -14.06 8.69 -92.38 -0.80 -14.86 16 7 C 0.09 4.14 2.17 30.59 0.07 4.21 16 8 H 0.06 2.61 6.31 -2.39 -0.02 2.60 16 9 C -0.17 -5.79 9.17 71.98 0.66 -5.13 16 10 C 0.03 1.66 4.68 29.84 0.14 1.80 16 11 C -0.53 -31.32 8.88 25.60 0.23 -31.10 16 12 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 13 C 0.00 0.26 5.46 84.65 0.46 0.73 16 14 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 15 Si 0.96 46.40 29.54 68.60 2.03 48.42 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 19 C -0.13 -4.39 5.15 -19.77 -0.10 -4.49 16 20 C -0.06 -2.03 5.33 29.85 0.16 -1.88 16 21 C 0.08 2.35 6.77 86.30 0.58 2.93 16 22 N -0.86 -22.15 9.62 -186.71 -1.80 -23.94 16 23 C -0.08 -2.07 9.33 22.25 0.21 -1.86 16 24 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.07 0.97 8.08 -2.39 -0.02 0.96 16 26 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 27 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.13 4.05 5.43 -2.91 -0.02 4.04 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 2.13 6.91 -2.39 -0.02 2.12 16 32 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 33 H 0.02 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.08 2.21 8.05 -2.39 -0.02 2.19 16 36 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.35 7.41 9.08 -89.69 -0.81 6.60 16 40 H 0.35 7.26 8.99 -89.69 -0.81 6.45 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -70.44 337.59 2.66 -67.78 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.60 Total: 23.59 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 3.55 Total: -43.57 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.51 Total: -81.36 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.80 Total: -14.86 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -70.44 2.66 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695907116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.479 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds