Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38162 * 120.02534 * 2 1 4 4 C 1.38244 * 120.05473 * 180.25869 * 3 2 1 5 5 C 1.38286 * 120.11121 * 359.76246 * 4 3 2 6 6 C 1.38122 * 120.05348 * 359.95757 * 5 4 3 7 7 C 1.50706 * 120.02499 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47158 * 291.62574 * 7 6 5 9 9 N 1.46898 * 109.47122 * 183.12673 * 8 7 6 10 10 C 1.38707 * 120.02874 * 179.72306 * 2 1 3 11 11 O 1.35899 * 120.05917 * 359.97438 * 10 2 1 12 12 C 1.42899 * 116.99979 * 73.28144 * 11 10 2 13 13 H 1.08996 * 109.47265 * 321.68150 * 12 11 10 14 14 C 1.52997 * 109.47166 * 81.68339 * 12 11 10 15 15 C 1.53003 * 109.47223 * 201.68567 * 12 11 10 16 16 C 1.50702 * 109.47352 * 66.47848 * 15 12 11 17 17 H 1.07999 * 119.99591 * 354.07640 * 16 15 12 18 18 C 1.37870 * 120.00341 * 174.34536 * 16 15 12 19 19 N 1.31514 * 119.99893 * 359.73233 * 18 16 15 20 20 Si 1.86803 * 120.00290 * 179.72635 * 18 16 15 21 21 H 1.48493 * 109.46976 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46963 * 120.00512 * 20 18 16 23 23 H 1.48498 * 109.47017 * 240.00373 * 20 18 16 24 24 H 1.09005 * 109.47104 * 272.88030 * 1 2 3 25 25 H 1.08996 * 109.47907 * 32.88107 * 1 2 3 26 26 H 1.09004 * 109.47161 * 152.88464 * 1 2 3 27 27 H 1.08003 * 119.97535 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.94451 * 179.74862 * 4 3 2 29 29 H 1.08000 * 119.97530 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47202 * 51.62805 * 7 6 5 31 31 H 1.09006 * 109.46765 * 171.62636 * 7 6 5 32 32 H 1.09004 * 109.47329 * 303.12316 * 8 7 6 33 33 H 1.09000 * 109.47222 * 63.12173 * 8 7 6 34 34 H 1.00900 * 111.00397 * 180.02562 * 9 8 7 35 35 H 1.00905 * 110.99991 * 303.95379 * 9 8 7 36 36 H 1.09000 * 109.46922 * 167.67113 * 14 12 11 37 37 H 1.08995 * 109.47319 * 287.67970 * 14 12 11 38 38 H 1.09000 * 109.46919 * 47.67871 * 14 12 11 39 39 H 1.09002 * 109.47030 * 306.47974 * 15 12 11 40 40 H 1.08996 * 109.47548 * 186.48322 * 15 12 11 41 41 H 0.96999 * 120.00493 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5808 1.1969 -0.0054 5 6 4.2751 0.0010 -0.0059 6 6 3.5886 -1.1975 0.0000 7 6 4.3460 -2.5004 0.0001 8 6 5.0563 -2.6775 -1.3434 9 7 5.7330 -3.9810 -1.3715 10 6 2.2011 -1.2009 0.0058 11 8 1.5234 -2.3788 0.0120 12 6 0.8820 -2.7647 -1.2052 13 1 0.4568 -1.8841 -1.6868 14 6 1.9068 -3.4118 -2.1389 15 6 -0.2330 -3.7666 -0.8988 16 6 -1.3208 -3.0825 -0.1114 17 1 -1.1845 -2.0661 0.2272 18 6 -2.4876 -3.7560 0.1814 19 7 -2.6535 -4.9938 -0.2309 20 14 -3.8327 -2.9107 1.1640 21 1 -3.4033 -1.5308 1.5056 22 1 -5.0765 -2.8555 0.3547 23 1 -4.0878 -3.6736 2.4122 24 1 -0.3633 0.0516 1.0264 25 1 -0.3635 0.8630 -0.5579 26 1 -0.3634 -0.9147 -0.4684 27 1 1.6583 2.1315 -0.0004 28 1 4.1193 2.1330 -0.0095 29 1 5.3551 0.0042 -0.0105 30 1 5.0835 -2.4919 0.8027 31 1 3.6501 -3.3251 0.1547 32 1 4.3248 -2.6304 -2.1502 33 1 5.7917 -1.8834 -1.4730 34 1 6.2104 -4.1219 -2.2491 35 1 6.3701 -4.0745 -0.5946 36 1 1.3888 -3.8994 -2.9647 37 1 2.5757 -2.6458 -2.5310 38 1 2.4858 -4.1514 -1.5859 39 1 0.1720 -4.5939 -0.3159 40 1 -0.6456 -4.1480 -1.8328 41 1 -3.4742 -5.4679 -0.0246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695909331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = -31.753361 kcal Electronic energy + Delta-G solvation = -20609.349295 eV Core-core repulsion = 17681.724738 eV Total energy + Delta-G solvation = -2927.624557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00141 -37.12219 -35.62764 -33.40126 -32.56475 -31.56089 -30.33427 -27.53162 -27.13958 -26.28445 -23.39985 -22.67116 -21.53925 -20.28490 -20.04225 -17.25030 -16.52167 -16.02288 -15.71507 -15.22417 -14.71489 -14.53503 -14.23820 -13.93560 -13.40871 -13.17972 -12.97860 -12.55967 -12.29916 -12.15301 -11.97719 -11.77867 -11.45968 -11.34678 -11.24671 -11.04463 -10.98568 -10.91771 -10.67137 -10.52896 -10.22814 -9.39179 -9.05465 -8.79084 -8.70289 -8.35063 -8.34640 -7.97087 -5.97197 -3.97817 1.55627 1.58655 3.33354 3.41283 3.44627 3.81512 4.46028 4.48814 4.54057 5.02944 5.11909 5.19331 5.28667 5.34255 5.40083 5.51173 5.59654 5.72479 5.79335 5.86529 5.93832 6.02399 6.10074 6.15347 6.20500 6.24729 6.40468 6.42608 6.67920 6.73348 6.74962 6.84730 6.87478 6.99196 7.08746 7.13506 7.37797 7.62496 7.70842 8.02785 8.34251 8.47709 9.07169 9.65387 11.14455 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.006480 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.260783 B = 4320.179978 C = 5428.286881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.137 4.137 5 C -0.116 4.116 6 C -0.102 4.102 7 C -0.078 4.078 8 C 0.064 3.936 9 N -0.848 5.848 10 C 0.120 3.880 11 O -0.312 6.312 12 C 0.097 3.903 13 H 0.053 0.947 14 C -0.177 4.177 15 C 0.025 3.975 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.021 0.979 34 H 0.339 0.661 35 H 0.337 0.663 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.039 0.961 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.639 9.032 -2.385 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.132 4.132 4 C -0.155 4.155 5 C -0.134 4.134 6 C -0.104 4.104 7 C -0.115 4.115 8 C -0.066 4.066 9 N -0.377 5.377 10 C 0.076 3.924 11 O -0.229 6.229 12 C 0.042 3.958 13 H 0.071 0.929 14 C -0.234 4.234 15 C -0.012 4.012 16 C -0.556 4.556 17 H 0.089 0.911 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.715 3.285 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.039 0.961 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.743 8.442 -2.170 16.273 hybrid contribution 0.129 1.200 0.366 1.261 sum 13.872 9.641 -1.804 16.989 Atomic orbital electron populations 1.21275 0.90295 1.04862 1.03003 1.20429 0.97227 0.92663 1.00510 1.20900 0.94042 0.97120 1.01160 1.20957 0.94204 0.97573 1.02797 1.20758 0.99096 0.91718 1.01812 1.19929 0.92802 0.95220 1.02400 1.20453 0.99059 0.95663 0.96344 1.21910 0.97157 0.88807 0.98729 1.58657 1.37982 1.33373 1.07733 1.18595 0.89615 0.86372 0.97856 1.86170 1.67349 1.33920 1.35487 1.22769 0.92523 0.98099 0.82400 0.92933 1.22545 0.99761 1.00938 1.00157 1.19271 0.90517 0.93454 0.97968 1.21470 0.99977 1.00216 1.33956 0.91084 1.24991 0.98448 0.94865 0.96081 1.69966 1.26592 1.10528 1.46529 0.86602 0.82001 0.79830 0.80026 1.19644 1.21147 1.21073 0.91169 0.92505 0.87247 0.86352 0.86572 0.86606 0.91768 0.88663 0.90327 0.96122 0.84884 0.85066 0.91845 0.93988 0.91393 0.95733 0.94295 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.04 36.00 0.33 -2.17 16 2 C -0.11 -1.87 5.74 -104.48 -0.60 -2.47 16 3 C -0.11 -1.65 9.71 -39.61 -0.38 -2.04 16 4 C -0.14 -1.78 10.04 -39.56 -0.40 -2.18 16 5 C -0.12 -1.55 9.44 -39.61 -0.37 -1.92 16 6 C -0.10 -1.60 5.25 -104.47 -0.55 -2.15 16 7 C -0.08 -1.10 5.47 -27.88 -0.15 -1.26 16 8 C 0.06 0.78 6.60 -3.83 -0.03 0.76 16 9 N -0.85 -9.20 9.62 -10.37 -0.10 -9.30 16 10 C 0.12 2.22 5.59 -39.22 -0.22 2.00 16 11 O -0.31 -6.63 7.87 -19.42 -0.15 -6.78 16 12 C 0.10 2.03 2.07 -26.73 -0.06 1.97 16 13 H 0.05 1.10 6.15 -51.93 -0.32 0.78 16 14 C -0.18 -3.16 8.67 37.16 0.32 -2.84 16 15 C 0.02 0.63 4.67 -27.88 -0.13 0.50 16 16 C -0.52 -14.25 8.65 -34.44 -0.30 -14.55 16 17 H 0.07 1.87 4.72 -52.49 -0.25 1.63 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.11 2.27 2.45 -51.93 -0.13 2.14 16 27 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.62 6.44 -51.93 -0.33 1.29 16 32 H 0.08 1.07 5.50 -51.93 -0.29 0.78 16 33 H 0.02 0.22 8.01 -51.93 -0.42 -0.19 16 34 H 0.34 3.01 9.08 -39.29 -0.36 2.65 16 35 H 0.34 3.11 8.99 -39.29 -0.35 2.76 16 36 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 37 H 0.04 0.67 6.17 -51.93 -0.32 0.35 16 38 H 0.07 1.24 7.59 -51.93 -0.39 0.84 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.04 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -30.20 324.25 -8.37 -38.57 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.08 Total: 6.82 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -2.63 Total: -24.82 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.64 Total: -35.27 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.15 Total: -6.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.20 -8.37 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695909331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.812 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds