Wall clock time and date at job start Mon Mar 30 2020 06:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38162 * 120.02534 * 2 1 4 4 C 1.38244 * 120.05473 * 180.25869 * 3 2 1 5 5 C 1.38286 * 120.11121 * 359.76246 * 4 3 2 6 6 C 1.38122 * 120.05348 * 359.95757 * 5 4 3 7 7 C 1.50706 * 120.02499 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47158 * 291.62574 * 7 6 5 9 9 N 1.46898 * 109.47122 * 183.12673 * 8 7 6 10 10 C 1.38707 * 120.02874 * 179.72306 * 2 1 3 11 11 O 1.35899 * 120.05917 * 359.97438 * 10 2 1 12 12 C 1.42899 * 116.99979 * 73.28144 * 11 10 2 13 13 H 1.08996 * 109.47265 * 321.68150 * 12 11 10 14 14 C 1.52997 * 109.47166 * 81.68339 * 12 11 10 15 15 C 1.53003 * 109.47223 * 201.68567 * 12 11 10 16 16 C 1.50702 * 109.47352 * 66.47848 * 15 12 11 17 17 H 1.07999 * 119.99591 * 354.07640 * 16 15 12 18 18 C 1.37870 * 120.00341 * 174.34536 * 16 15 12 19 19 N 1.31514 * 119.99893 * 359.73233 * 18 16 15 20 20 Si 1.86803 * 120.00290 * 179.72635 * 18 16 15 21 21 H 1.48493 * 109.46976 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46963 * 120.00512 * 20 18 16 23 23 H 1.48498 * 109.47017 * 240.00373 * 20 18 16 24 24 H 1.09005 * 109.47104 * 272.88030 * 1 2 3 25 25 H 1.08996 * 109.47907 * 32.88107 * 1 2 3 26 26 H 1.09004 * 109.47161 * 152.88464 * 1 2 3 27 27 H 1.08003 * 119.97535 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.94451 * 179.74862 * 4 3 2 29 29 H 1.08000 * 119.97530 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47202 * 51.62805 * 7 6 5 31 31 H 1.09006 * 109.46765 * 171.62636 * 7 6 5 32 32 H 1.09004 * 109.47329 * 303.12316 * 8 7 6 33 33 H 1.09000 * 109.47222 * 63.12173 * 8 7 6 34 34 H 1.00900 * 111.00397 * 180.02562 * 9 8 7 35 35 H 1.00905 * 110.99991 * 303.95379 * 9 8 7 36 36 H 1.09000 * 109.46922 * 167.67113 * 14 12 11 37 37 H 1.08995 * 109.47319 * 287.67970 * 14 12 11 38 38 H 1.09000 * 109.46919 * 47.67871 * 14 12 11 39 39 H 1.09002 * 109.47030 * 306.47974 * 15 12 11 40 40 H 1.08996 * 109.47548 * 186.48322 * 15 12 11 41 41 H 0.96999 * 120.00493 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1962 0.0000 4 6 3.5808 1.1969 -0.0054 5 6 4.2751 0.0010 -0.0059 6 6 3.5886 -1.1975 0.0000 7 6 4.3460 -2.5004 0.0001 8 6 5.0563 -2.6775 -1.3434 9 7 5.7330 -3.9810 -1.3715 10 6 2.2011 -1.2009 0.0058 11 8 1.5234 -2.3788 0.0120 12 6 0.8820 -2.7647 -1.2052 13 1 0.4568 -1.8841 -1.6868 14 6 1.9068 -3.4118 -2.1389 15 6 -0.2330 -3.7666 -0.8988 16 6 -1.3208 -3.0825 -0.1114 17 1 -1.1845 -2.0661 0.2272 18 6 -2.4876 -3.7560 0.1814 19 7 -2.6535 -4.9938 -0.2309 20 14 -3.8327 -2.9107 1.1640 21 1 -3.4033 -1.5308 1.5056 22 1 -5.0765 -2.8555 0.3547 23 1 -4.0878 -3.6736 2.4122 24 1 -0.3633 0.0516 1.0264 25 1 -0.3635 0.8630 -0.5579 26 1 -0.3634 -0.9147 -0.4684 27 1 1.6583 2.1315 -0.0004 28 1 4.1193 2.1330 -0.0095 29 1 5.3551 0.0042 -0.0105 30 1 5.0835 -2.4919 0.8027 31 1 3.6501 -3.3251 0.1547 32 1 4.3248 -2.6304 -2.1502 33 1 5.7917 -1.8834 -1.4730 34 1 6.2104 -4.1219 -2.2491 35 1 6.3701 -4.0745 -0.5946 36 1 1.3888 -3.8994 -2.9647 37 1 2.5757 -2.6458 -2.5310 38 1 2.4858 -4.1514 -1.5859 39 1 0.1720 -4.5939 -0.3159 40 1 -0.6456 -4.1480 -1.8328 41 1 -3.4742 -5.4679 -0.0246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695909331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:32 Heat of formation + Delta-G solvation = -50.607823 kcal Electronic energy + Delta-G solvation = -20610.166886 eV Core-core repulsion = 17681.724738 eV Total energy + Delta-G solvation = -2928.442148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29496 -38.52726 -36.63602 -35.37311 -33.70675 -33.33531 -31.55882 -29.38318 -28.28452 -27.58987 -25.31025 -23.73850 -22.91170 -21.83414 -21.25519 -18.64083 -18.56211 -17.12280 -16.91890 -16.69410 -16.25303 -15.76441 -15.50003 -15.18196 -14.68563 -14.66839 -14.43805 -13.84713 -13.79577 -13.57520 -13.50055 -13.33565 -13.16057 -12.96758 -12.68914 -12.61765 -12.40981 -12.26409 -12.12404 -12.05585 -11.84467 -11.17574 -10.88858 -10.58418 -10.47082 -9.55676 -9.48085 -9.22779 -8.15720 -6.22955 0.38019 0.43477 1.38739 1.40166 1.52286 2.42835 2.60837 3.10424 3.22254 3.58264 3.92676 4.07520 4.09674 4.17647 4.27647 4.34740 4.35106 4.44615 4.48552 4.59619 4.64523 4.67225 4.78590 4.79546 4.92057 5.00555 5.10180 5.15490 5.22058 5.32967 5.39980 5.49369 5.56197 5.59252 5.63556 5.79155 5.87099 6.04237 6.27642 6.28200 6.66889 6.89807 6.94170 7.44397 8.96943 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.006480 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.260783 B = 4320.179978 C = 5428.286881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.124 4.124 5 C -0.110 4.110 6 C -0.106 4.106 7 C -0.074 4.074 8 C 0.073 3.927 9 N -0.860 5.860 10 C 0.080 3.920 11 O -0.335 6.335 12 C 0.109 3.891 13 H 0.051 0.949 14 C -0.162 4.162 15 C 0.030 3.970 16 C -0.530 4.530 17 H 0.080 0.920 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.954 3.046 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.284 1.284 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.351 0.649 35 H 0.348 0.652 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.060 0.940 39 H -0.010 1.010 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.667 11.902 -2.269 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.133 4.133 4 C -0.142 4.142 5 C -0.128 4.128 6 C -0.108 4.108 7 C -0.111 4.111 8 C -0.058 4.058 9 N -0.392 5.392 10 C 0.036 3.964 11 O -0.253 6.253 12 C 0.054 3.946 13 H 0.068 0.932 14 C -0.219 4.219 15 C -0.007 4.007 16 C -0.567 4.567 17 H 0.098 0.902 18 C -0.197 4.197 19 N -0.577 5.577 20 Si 0.779 3.221 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.210 1.210 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.160 0.840 28 H 0.173 0.827 29 H 0.167 0.833 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.008 0.992 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.791 11.323 -2.058 19.540 hybrid contribution -0.390 0.358 0.347 0.633 sum 15.401 11.682 -1.712 19.406 Atomic orbital electron populations 1.21153 0.91535 1.04191 1.02316 1.20502 0.96733 0.93646 1.02126 1.21190 0.95076 0.96765 1.00281 1.21427 0.93632 0.99061 1.00038 1.21145 1.00763 0.90759 1.00104 1.20119 0.91774 0.96799 1.02059 1.20398 0.98607 0.93911 0.98205 1.21744 0.97170 0.90119 0.96720 1.58584 1.38747 1.32878 1.08956 1.18940 0.90852 0.85557 1.01084 1.86107 1.67975 1.35833 1.35379 1.22372 0.92183 0.96816 0.83240 0.93151 1.22383 0.99116 1.01083 0.99328 1.19102 0.91940 0.93559 0.96143 1.21927 1.00439 1.00771 1.33592 0.90180 1.25889 1.01072 0.95512 0.97272 1.70101 1.27410 1.12111 1.48066 0.85549 0.79030 0.79132 0.78348 1.18422 1.20267 1.20971 0.92225 0.90190 0.90404 0.84007 0.82663 0.83255 0.90122 0.92314 0.91979 0.93847 0.83518 0.83927 0.91626 0.91827 0.92138 0.99167 0.96328 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.04 71.24 0.64 -4.25 16 2 C -0.13 -4.39 5.74 -19.77 -0.11 -4.50 16 3 C -0.12 -2.97 9.71 22.25 0.22 -2.76 16 4 C -0.12 -2.63 10.04 22.28 0.22 -2.41 16 5 C -0.11 -2.49 9.44 22.25 0.21 -2.28 16 6 C -0.11 -3.14 5.25 -19.77 -0.10 -3.25 16 7 C -0.07 -2.00 5.47 29.85 0.16 -1.84 16 8 C 0.07 1.63 6.60 86.30 0.57 2.20 16 9 N -0.86 -17.24 9.62 -186.72 -1.80 -19.04 16 10 C 0.08 2.92 5.59 22.50 0.13 3.05 16 11 O -0.34 -14.82 7.87 -92.41 -0.73 -15.55 16 12 C 0.11 4.78 2.07 30.59 0.06 4.85 16 13 H 0.05 2.21 6.15 -2.39 -0.01 2.19 16 14 C -0.16 -5.96 8.67 71.98 0.62 -5.33 16 15 C 0.03 1.60 4.67 29.85 0.14 1.74 16 16 C -0.53 -30.34 8.65 25.60 0.22 -30.12 16 17 H 0.08 4.37 4.72 -2.91 -0.01 4.36 16 18 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 19 N -0.94 -57.85 13.29 21.44 0.28 -57.57 16 20 Si 0.95 45.28 29.54 68.60 2.03 47.31 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 24 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.08 2.39 8.10 -2.39 -0.02 2.37 16 26 H 0.08 3.32 2.45 -2.38 -0.01 3.31 16 27 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 28 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.05 6.44 -2.38 -0.02 2.03 16 32 H 0.06 1.59 5.50 -2.38 -0.01 1.58 16 33 H 0.04 0.78 8.01 -2.39 -0.02 0.76 16 34 H 0.35 5.56 9.08 -89.69 -0.81 4.74 16 35 H 0.35 5.74 8.99 -89.69 -0.81 4.93 16 36 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 37 H 0.06 2.04 6.17 -2.39 -0.01 2.03 16 38 H 0.06 2.29 7.59 -2.39 -0.02 2.28 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H 0.02 1.06 8.06 -2.39 -0.02 1.04 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -68.48 324.25 2.66 -65.82 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.57 Total: 23.50 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.45 Total: -44.46 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.51 Total: -76.60 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.73 Total: -15.55 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.48 2.66 -65.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695909331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.210 kcal (2) G-P(sol) polarization free energy of solvation -68.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds