Wall clock time and date at job start Mon Mar 30 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 119.99975 * 2 1 4 4 H 1.48499 * 109.47484 * 240.00133 * 3 2 1 5 5 H 1.48503 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47217 * 120.00425 * 3 2 1 7 7 C 1.37878 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00136 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.49560 * 60.07203 * 9 7 2 11 11 C 1.53032 * 109.50039 * 300.00517 * 9 7 2 12 12 C 1.53048 * 109.54127 * 178.64990 * 11 9 7 13 13 C 1.53194 * 109.30815 * 61.36426 * 12 11 9 14 14 N 1.46929 * 108.77643 * 305.36661 * 13 12 11 15 15 C 1.34774 * 120.62731 * 233.58857 * 14 13 12 16 16 O 1.21286 * 119.99969 * 180.02562 * 15 14 13 17 17 C 1.50695 * 120.00794 * 359.97438 * 15 14 13 18 18 H 1.08999 * 115.55804 * 325.70687 * 17 15 14 19 19 C 1.53002 * 117.50044 * 111.38850 * 17 15 14 20 20 C 1.53000 * 60.02940 * 107.50594 * 19 17 15 21 21 H 1.09008 * 117.49673 * 107.47884 * 20 19 17 22 22 C 1.52995 * 117.49920 * 252.47484 * 20 19 17 23 23 C 1.53002 * 117.49730 * 197.35532 * 22 20 19 24 24 C 1.53004 * 117.49977 * 128.70036 * 22 20 19 25 25 C 1.46922 * 118.73727 * 53.86326 * 14 13 12 26 26 H 0.96992 * 119.99524 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46472 * 58.63172 * 11 9 7 28 28 H 1.08996 * 109.45366 * 298.66238 * 11 9 7 29 29 H 1.09006 * 109.49189 * 301.41688 * 12 11 9 30 30 H 1.08996 * 109.49833 * 181.31759 * 12 11 9 31 31 H 1.09003 * 109.58024 * 185.58469 * 13 12 11 32 32 H 1.08997 * 109.70607 * 65.22659 * 13 12 11 33 33 H 1.09002 * 117.49918 * 0.02562 * 19 17 15 34 34 H 1.09002 * 117.49754 * 215.00777 * 19 17 15 35 35 H 1.08996 * 115.55084 * 343.02721 * 22 20 19 36 36 H 1.09002 * 117.50074 * 0.02562 * 23 22 20 37 37 H 1.09009 * 117.49796 * 145.02092 * 23 22 20 38 38 H 1.08995 * 117.49874 * 214.98417 * 24 22 20 39 39 H 1.08999 * 117.49469 * 359.97239 * 24 22 20 40 40 H 1.09001 * 109.58735 * 65.92456 * 25 14 13 41 41 H 1.09001 * 109.58792 * 186.35044 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5577 -0.8909 11 6 0.3714 -2.5811 1.2490 12 6 -0.4197 -3.8912 1.2331 13 6 0.5558 -5.0723 1.2502 14 7 1.4987 -4.9230 0.1333 15 6 1.6756 -5.9219 -0.7541 16 8 2.4573 -5.7866 -1.6716 17 6 0.9031 -7.2072 -0.6059 18 1 0.7043 -7.5209 0.4189 19 6 -0.1635 -7.5159 -1.6586 20 6 1.1482 -8.3035 -1.6457 21 1 1.1106 -9.3381 -1.3045 22 6 2.1586 -8.0113 -2.7567 23 6 3.2619 -9.0437 -2.9975 24 6 3.5981 -7.7032 -2.3394 25 6 2.2496 -3.6666 0.0058 26 1 -0.4849 0.8400 0.0004 27 1 -0.3208 -1.7392 1.2618 28 1 1.0003 -2.5476 2.1386 29 1 -1.0302 -3.9365 0.3311 30 1 -1.0634 -3.9382 2.1114 31 1 0.0024 -6.0048 1.1391 32 1 1.1039 -5.0826 2.1923 33 1 -0.3061 -6.7894 -2.4586 34 1 -1.0640 -8.0323 -1.3263 35 1 1.7630 -7.4855 -3.6256 36 1 3.2676 -9.9312 -2.3647 37 1 3.5924 -9.1968 -4.0250 38 1 4.1495 -6.9749 -2.9339 39 1 3.8249 -7.7083 -1.2733 40 1 2.9328 -3.5621 0.8487 41 1 2.8143 -3.6714 -0.9265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699105761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:06 Heat of formation + Delta-G solvation = 12.980580 kcal Electronic energy + Delta-G solvation = -20529.777872 eV Core-core repulsion = 17604.093125 eV Total energy + Delta-G solvation = -2925.684748 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07024 -37.91761 -36.21224 -34.89120 -33.38670 -31.26250 -30.19916 -25.75641 -24.95023 -23.70885 -22.90608 -22.01877 -21.62137 -20.44842 -19.22183 -17.90164 -17.04504 -16.19088 -15.54445 -15.10578 -14.74908 -14.66742 -14.17585 -13.65511 -13.44729 -13.09972 -12.72167 -12.57533 -12.16858 -12.06665 -11.95344 -11.37168 -11.11127 -10.97116 -10.85676 -10.82330 -10.80997 -10.68844 -10.32462 -9.94348 -9.80561 -9.78111 -9.55512 -9.39001 -8.85899 -8.64897 -8.36976 -7.80559 -6.01277 -4.08461 2.94514 3.31544 3.35914 3.38453 3.53850 3.84679 4.19715 4.42837 4.68725 4.87767 4.91282 5.09659 5.26015 5.28732 5.35060 5.44056 5.49474 5.63036 5.68485 5.69993 5.80946 5.83441 5.97986 6.15114 6.17924 6.29123 6.35779 6.43080 6.43848 6.50764 6.54067 6.68623 6.83660 7.02490 7.20418 7.35719 7.69576 7.93844 8.08127 8.10065 8.39038 8.78034 8.95397 9.56312 11.04111 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.005026 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.539179 B = 5569.921620 C = 6162.650136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.042 3.958 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.110 3.890 14 N -0.601 5.601 15 C 0.534 3.466 16 O -0.533 6.533 17 C -0.186 4.186 18 H 0.118 0.882 19 C -0.147 4.147 20 C -0.092 4.092 21 H 0.108 0.892 22 C -0.107 4.107 23 C -0.205 4.205 24 C -0.114 4.114 25 C 0.119 3.881 26 H 0.261 0.739 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -15.629 0.548 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.333 5.333 15 C 0.321 3.679 16 O -0.411 6.411 17 C -0.207 4.207 18 H 0.136 0.864 19 C -0.184 4.184 20 C -0.111 4.111 21 H 0.126 0.874 22 C -0.125 4.125 23 C -0.242 4.242 24 C -0.151 4.151 25 C -0.002 4.002 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.224 -15.404 0.071 15.406 hybrid contribution 0.234 1.010 0.297 1.079 sum 0.010 -14.394 0.368 14.398 Atomic orbital electron populations 1.69866 1.05892 1.26550 1.50512 1.24933 0.94850 0.99047 0.94951 0.86646 0.79593 0.83027 0.78664 1.20236 1.21312 1.20270 1.21052 0.92942 0.90364 1.50951 0.92589 1.19029 0.92877 0.91121 0.94721 0.95341 1.21629 0.99439 0.95409 0.98562 1.21990 0.97650 0.96697 1.00861 1.21724 0.91382 0.99053 0.89145 1.48251 1.41899 1.15942 1.27252 1.19521 0.82410 0.83869 0.82077 1.90693 1.37190 1.80831 1.32377 1.22330 1.04636 0.96621 0.97084 0.86390 1.22984 0.92395 1.02816 1.00243 1.21781 0.96960 0.95169 0.97143 0.87365 1.21419 0.90142 1.02256 0.98702 1.23258 1.05189 0.94254 1.01543 1.22507 0.97181 0.95244 1.00181 1.22043 0.94928 0.81994 1.01267 0.92946 0.88701 0.94679 0.92405 0.92629 0.91091 0.92302 0.88180 0.88064 0.88184 0.89676 0.89567 0.89121 0.89929 0.92960 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.31 55.43 0.63 -24.40 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.98 8.57 -34.44 -0.30 -14.27 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.03 2.26 -91.43 -0.21 0.82 16 10 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C 0.11 1.73 6.29 -3.71 -0.02 1.70 16 14 N -0.60 -11.12 2.97 -172.50 -0.51 -11.63 16 15 C 0.53 9.45 7.32 -10.99 -0.08 9.36 16 16 O -0.53 -10.67 10.96 5.55 0.06 -10.61 16 17 C -0.19 -2.49 4.95 -91.74 -0.45 -2.94 16 18 H 0.12 1.34 6.82 -51.93 -0.35 0.98 16 19 C -0.15 -1.75 9.95 -26.73 -0.27 -2.01 16 20 C -0.09 -1.12 5.87 -90.59 -0.53 -1.65 16 21 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 22 C -0.11 -1.46 4.48 -90.62 -0.41 -1.87 16 23 C -0.21 -2.43 10.25 -26.69 -0.27 -2.70 16 24 C -0.11 -1.66 7.09 -26.69 -0.19 -1.85 16 25 C 0.12 2.57 5.69 -3.49 -0.02 2.55 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.91 5.67 -51.93 -0.29 0.61 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 38 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 39 H 0.08 1.26 7.97 -51.93 -0.41 0.85 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.82 7.00 -51.93 -0.36 1.45 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -28.84 320.49 -9.92 -38.77 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.77 Total: 3.33 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.14 Total: -16.42 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.12 Total: -36.03 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.06 Total: -10.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.84 -9.92 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.748 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds