Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 119.99975 * 2 1 4 4 H 1.48499 * 109.47484 * 240.00133 * 3 2 1 5 5 H 1.48503 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47217 * 120.00425 * 3 2 1 7 7 C 1.37878 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00136 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.49560 * 60.07203 * 9 7 2 11 11 C 1.53032 * 109.50039 * 300.00517 * 9 7 2 12 12 C 1.53048 * 109.54127 * 178.64990 * 11 9 7 13 13 C 1.53194 * 109.30815 * 61.36426 * 12 11 9 14 14 N 1.46929 * 108.77643 * 305.36661 * 13 12 11 15 15 C 1.34774 * 120.62731 * 233.58857 * 14 13 12 16 16 O 1.21286 * 119.99969 * 180.02562 * 15 14 13 17 17 C 1.50695 * 120.00794 * 359.97438 * 15 14 13 18 18 H 1.08999 * 115.55804 * 325.70687 * 17 15 14 19 19 C 1.53002 * 117.50044 * 111.38850 * 17 15 14 20 20 C 1.53000 * 60.02940 * 107.50594 * 19 17 15 21 21 H 1.09008 * 117.49673 * 107.47884 * 20 19 17 22 22 C 1.52995 * 117.49920 * 252.47484 * 20 19 17 23 23 C 1.53002 * 117.49730 * 197.35532 * 22 20 19 24 24 C 1.53004 * 117.49977 * 128.70036 * 22 20 19 25 25 C 1.46922 * 118.73727 * 53.86326 * 14 13 12 26 26 H 0.96992 * 119.99524 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46472 * 58.63172 * 11 9 7 28 28 H 1.08996 * 109.45366 * 298.66238 * 11 9 7 29 29 H 1.09006 * 109.49189 * 301.41688 * 12 11 9 30 30 H 1.08996 * 109.49833 * 181.31759 * 12 11 9 31 31 H 1.09003 * 109.58024 * 185.58469 * 13 12 11 32 32 H 1.08997 * 109.70607 * 65.22659 * 13 12 11 33 33 H 1.09002 * 117.49918 * 0.02562 * 19 17 15 34 34 H 1.09002 * 117.49754 * 215.00777 * 19 17 15 35 35 H 1.08996 * 115.55084 * 343.02721 * 22 20 19 36 36 H 1.09002 * 117.50074 * 0.02562 * 23 22 20 37 37 H 1.09009 * 117.49796 * 145.02092 * 23 22 20 38 38 H 1.08995 * 117.49874 * 214.98417 * 24 22 20 39 39 H 1.08999 * 117.49469 * 359.97239 * 24 22 20 40 40 H 1.09001 * 109.58735 * 65.92456 * 25 14 13 41 41 H 1.09001 * 109.58792 * 186.35044 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5577 -0.8909 11 6 0.3714 -2.5811 1.2490 12 6 -0.4197 -3.8912 1.2331 13 6 0.5558 -5.0723 1.2502 14 7 1.4987 -4.9230 0.1333 15 6 1.6756 -5.9219 -0.7541 16 8 2.4573 -5.7866 -1.6716 17 6 0.9031 -7.2072 -0.6059 18 1 0.7043 -7.5209 0.4189 19 6 -0.1635 -7.5159 -1.6586 20 6 1.1482 -8.3035 -1.6457 21 1 1.1106 -9.3381 -1.3045 22 6 2.1586 -8.0113 -2.7567 23 6 3.2619 -9.0437 -2.9975 24 6 3.5981 -7.7032 -2.3394 25 6 2.2496 -3.6666 0.0058 26 1 -0.4849 0.8400 0.0004 27 1 -0.3208 -1.7392 1.2618 28 1 1.0003 -2.5476 2.1386 29 1 -1.0302 -3.9365 0.3311 30 1 -1.0634 -3.9382 2.1114 31 1 0.0024 -6.0048 1.1391 32 1 1.1039 -5.0826 2.1923 33 1 -0.3061 -6.7894 -2.4586 34 1 -1.0640 -8.0323 -1.3263 35 1 1.7630 -7.4855 -3.6256 36 1 3.2676 -9.9312 -2.3647 37 1 3.5924 -9.1968 -4.0250 38 1 4.1495 -6.9749 -2.9339 39 1 3.8249 -7.7083 -1.2733 40 1 2.9328 -3.5621 0.8487 41 1 2.8143 -3.6714 -0.9265 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699105761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = -1.875107 kcal Electronic energy + Delta-G solvation = -20530.422063 eV Core-core repulsion = 17604.093125 eV Total energy + Delta-G solvation = -2926.328939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37189 -39.25349 -37.64619 -35.97393 -35.24150 -32.95712 -31.96000 -27.45677 -26.59344 -24.91000 -24.09662 -23.25327 -23.08764 -21.69133 -20.74130 -19.32373 -18.52053 -17.99276 -16.78809 -16.61095 -16.32473 -15.92304 -15.60135 -15.05448 -14.98444 -14.58161 -14.48762 -13.94771 -13.65258 -13.58099 -13.25566 -12.86863 -12.68168 -12.61642 -12.34110 -12.17722 -11.98388 -11.90688 -11.85562 -11.70882 -11.59033 -11.23352 -10.92161 -10.75400 -10.63763 -10.42733 -9.92685 -9.36307 -8.11436 -6.27041 1.40074 1.41523 1.49056 1.66554 2.16603 2.43253 2.78055 3.14630 3.18516 3.57707 3.83858 3.91792 4.03271 4.16120 4.27843 4.31957 4.34362 4.38097 4.48678 4.55679 4.60988 4.65510 4.82737 4.87173 4.88600 4.90396 4.99574 5.01381 5.13040 5.17301 5.29100 5.31150 5.37244 5.42884 5.50372 5.59992 5.62756 5.92899 6.13291 6.34204 6.68819 6.82649 7.39253 7.41636 8.91871 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.005026 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.539179 B = 5569.921620 C = 6162.650136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.043 3.957 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.112 3.888 14 N -0.609 5.609 15 C 0.522 3.478 16 O -0.566 6.566 17 C -0.192 4.192 18 H 0.152 0.848 19 C -0.138 4.138 20 C -0.085 4.085 21 H 0.143 0.857 22 C -0.120 4.120 23 C -0.173 4.173 24 C -0.135 4.135 25 C 0.134 3.866 26 H 0.262 0.738 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -18.169 1.959 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.024 3.976 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.164 4.164 13 C -0.010 4.010 14 N -0.341 5.341 15 C 0.312 3.688 16 O -0.446 6.446 17 C -0.213 4.213 18 H 0.170 0.830 19 C -0.175 4.175 20 C -0.103 4.103 21 H 0.161 0.839 22 C -0.138 4.138 23 C -0.210 4.210 24 C -0.173 4.173 25 C 0.011 3.989 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.955 -17.965 1.491 18.052 hybrid contribution 0.482 1.835 -0.229 1.911 sum -0.473 -16.130 1.262 16.186 Atomic orbital electron populations 1.70007 1.07097 1.27265 1.50858 1.25689 0.95694 1.02256 0.94529 0.85667 0.78460 0.79054 0.78808 1.20196 1.20658 1.19263 1.21427 0.93017 0.92048 1.51355 0.93116 1.18922 0.93078 0.91648 0.93934 0.99855 1.21422 0.98741 0.97147 0.97086 1.21894 0.97831 0.95018 1.01653 1.21933 0.90677 0.99635 0.88764 1.48327 1.42313 1.14845 1.28624 1.20440 0.82241 0.85079 0.81068 1.90697 1.38644 1.81689 1.33575 1.22353 1.05144 0.94399 0.99359 0.83045 1.23093 0.93596 1.02124 0.98678 1.21946 0.96251 0.96383 0.95701 0.83893 1.21474 0.90354 1.03132 0.98866 1.23309 1.02195 0.93435 1.02087 1.22326 0.98275 0.97203 0.99456 1.21543 0.94287 0.83097 0.99994 0.92926 0.92055 0.94592 0.93881 0.89382 0.86887 0.90535 0.90692 0.84316 0.90338 0.87230 0.88671 0.91755 0.90846 0.92584 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.97 11.31 21.45 0.24 -52.73 16 2 C 0.02 0.98 5.30 84.65 0.45 1.43 16 3 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.54 -30.54 8.57 25.60 0.22 -30.32 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.04 2.24 2.26 -11.32 -0.03 2.21 16 10 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 11 C -0.11 -4.84 4.96 30.62 0.15 -4.69 16 12 C -0.13 -4.32 6.08 30.68 0.19 -4.13 16 13 C 0.11 3.18 6.29 86.36 0.54 3.72 16 14 N -0.61 -22.27 2.97 -818.06 -2.43 -24.70 16 15 C 0.52 18.25 7.32 87.66 0.64 18.89 16 16 O -0.57 -23.56 10.96 -3.05 -0.03 -23.59 16 17 C -0.19 -4.53 4.95 -11.52 -0.06 -4.58 16 18 H 0.15 2.58 6.82 -2.39 -0.02 2.56 16 19 C -0.14 -2.84 9.95 30.60 0.30 -2.53 16 20 C -0.08 -1.77 5.87 -10.77 -0.06 -1.84 16 21 H 0.14 2.08 8.14 -2.38 -0.02 2.06 16 22 C -0.12 -3.17 4.48 -10.79 -0.05 -3.21 16 23 C -0.17 -3.73 10.25 30.62 0.31 -3.42 16 24 C -0.14 -3.97 7.09 30.62 0.22 -3.76 16 25 C 0.13 6.01 5.69 86.51 0.49 6.50 16 26 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.06 3.22 6.04 -2.39 -0.01 3.21 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 31 H 0.11 2.32 5.67 -2.39 -0.01 2.31 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.06 2.17 8.06 -2.39 -0.02 2.15 16 39 H 0.07 2.25 7.97 -2.39 -0.02 2.24 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 2.54 7.00 -2.39 -0.02 2.52 16 Total: -1.00 -67.51 320.49 4.13 -63.38 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.00 Total: 17.16 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.33 Total: -25.72 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.18 Total: -77.42 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.03 Total: -23.59 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.51 4.13 -63.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.505 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds