Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48492 * 109.47229 * 269.99882 * 3 2 1 5 5 H 1.48499 * 109.46852 * 29.99883 * 3 2 1 6 6 H 1.48497 * 109.47015 * 149.99671 * 3 2 1 7 7 C 1.37876 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00273 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99734 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49719 * 59.99802 * 9 7 2 11 11 C 1.53039 * 109.49811 * 299.93334 * 9 7 2 12 12 C 1.53042 * 109.54198 * 178.65221 * 11 9 7 13 13 C 1.53194 * 109.31117 * 61.36213 * 12 11 9 14 14 N 1.46922 * 108.77708 * 305.37114 * 13 12 11 15 15 C 1.34784 * 120.63264 * 233.63139 * 14 13 12 16 16 O 1.21277 * 120.00226 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99411 * 359.97438 * 15 14 13 18 18 H 1.08995 * 115.55089 * 34.27724 * 17 15 14 19 19 C 1.53002 * 117.49815 * 248.61131 * 17 15 14 20 20 C 1.52996 * 117.49721 * 179.97438 * 17 15 14 21 21 H 1.09002 * 117.49712 * 0.02562 * 20 17 15 22 22 C 1.52996 * 117.49982 * 214.97901 * 20 17 15 23 23 C 1.53006 * 117.50023 * 128.74369 * 22 20 17 24 24 C 1.53002 * 117.49852 * 60.08404 * 22 20 17 25 25 C 1.46992 * 118.75940 * 53.60550 * 14 13 12 26 26 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46255 * 298.67213 * 11 9 7 28 28 H 1.08997 * 109.45914 * 58.62818 * 11 9 7 29 29 H 1.08992 * 109.50305 * 181.31811 * 12 11 9 30 30 H 1.08998 * 109.49465 * 301.41768 * 12 11 9 31 31 H 1.09004 * 109.58307 * 65.15290 * 13 12 11 32 32 H 1.08993 * 109.58780 * 185.58148 * 13 12 11 33 33 H 1.09005 * 117.49967 * 359.97438 * 19 17 15 34 34 H 1.08992 * 117.50036 * 144.99808 * 19 17 15 35 35 H 1.08999 * 115.55038 * 274.41625 * 22 20 17 36 36 H 1.08994 * 117.49743 * 0.02562 * 23 22 20 37 37 H 1.09001 * 117.49563 * 145.01803 * 23 22 20 38 38 H 1.09003 * 117.50179 * 214.97704 * 24 22 20 39 39 H 1.08995 * 117.49812 * 0.02562 * 24 22 20 40 40 H 1.09001 * 109.63362 * 186.62349 * 25 14 13 41 41 H 1.08996 * 109.58160 * 66.16954 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6245 -2.5575 -0.8895 11 6 0.3717 -2.5813 1.2504 12 6 -0.4193 -3.8914 1.2346 13 6 0.5562 -5.0724 1.2512 14 7 1.4988 -4.9230 0.1341 15 6 1.6748 -5.9214 -0.7542 16 8 2.4562 -5.7860 -1.6717 17 6 0.9014 -7.2064 -0.6063 18 1 -0.1088 -7.1041 -0.2102 19 6 1.6860 -8.4632 -0.2246 20 6 1.1451 -8.3012 -1.6469 21 1 1.8651 -8.0922 -2.4381 22 6 -0.0480 -9.1690 -2.0520 23 6 -0.3359 -9.3209 -3.5470 24 6 -1.2556 -8.4642 -2.6732 25 6 2.2460 -3.6640 0.0028 26 1 -0.4850 0.8400 -0.0004 27 1 1.0009 -2.5478 2.1399 28 1 -0.3203 -1.7394 1.2635 29 1 -1.0627 -3.9385 2.1131 30 1 -1.0300 -3.9366 0.3329 31 1 1.1045 -5.0802 2.1933 32 1 0.0030 -6.0049 1.1402 33 1 2.7617 -8.3607 -0.0808 34 1 1.1920 -9.1878 0.4226 35 1 -0.2420 -10.0298 -1.4121 36 1 0.3249 -8.8029 -4.2419 37 1 -0.7196 -10.2816 -3.8905 38 1 -2.2440 -8.8616 -2.4424 39 1 -1.1999 -7.3824 -2.7937 40 1 2.8072 -3.6670 -0.9316 41 1 2.9319 -3.5570 0.8431 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699105762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = 2.197268 kcal Electronic energy + Delta-G solvation = -20135.607806 eV Core-core repulsion = 17209.455459 eV Total energy + Delta-G solvation = -2926.152347 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98217 -38.13067 -36.67056 -34.84264 -33.44168 -31.30055 -30.24170 -25.87083 -24.98924 -23.84144 -22.92672 -22.40608 -21.65928 -20.24417 -19.36625 -18.22150 -17.04350 -16.24868 -15.83851 -15.27900 -14.96445 -14.53407 -14.31320 -13.63075 -13.48052 -13.03830 -12.94422 -12.72585 -12.13520 -12.05148 -11.96480 -11.69645 -11.45313 -11.03363 -10.97628 -10.89513 -10.83087 -10.71689 -10.32363 -10.07466 -9.96096 -9.79281 -9.66275 -9.46983 -9.22940 -8.81675 -8.38603 -7.87579 -6.01969 -4.09138 2.85293 3.30121 3.36493 3.38764 3.43727 3.68834 3.96973 4.42217 4.50158 4.72625 4.76373 4.92670 5.00801 5.16014 5.23438 5.28135 5.37314 5.47221 5.55816 5.62185 5.66517 5.77470 5.81731 5.96712 6.05063 6.07691 6.13132 6.26395 6.33733 6.41425 6.49571 6.66681 6.81848 6.98839 7.17679 7.33959 7.69029 7.92170 8.04121 8.07672 8.37651 8.68683 8.94633 9.55788 11.03558 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030945 B = 0.004338 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.624021 B = 6453.497388 C = 6482.536669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.110 3.890 14 N -0.598 5.598 15 C 0.537 3.463 16 O -0.554 6.554 17 C -0.181 4.181 18 H 0.123 0.877 19 C -0.146 4.146 20 C -0.093 4.093 21 H 0.118 0.882 22 C -0.126 4.126 23 C -0.175 4.175 24 C -0.177 4.177 25 C 0.117 3.883 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -16.848 1.172 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.329 5.329 15 C 0.324 3.676 16 O -0.433 6.433 17 C -0.202 4.202 18 H 0.141 0.859 19 C -0.183 4.183 20 C -0.112 4.112 21 H 0.136 0.864 22 C -0.144 4.144 23 C -0.212 4.212 24 C -0.214 4.214 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.461 -16.621 0.708 16.817 hybrid contribution 0.249 1.040 0.167 1.082 sum -2.212 -15.581 0.875 15.761 Atomic orbital electron populations 1.69872 1.05904 1.26467 1.50548 1.24933 0.94853 0.99076 0.94923 0.86577 0.79852 0.83320 0.78163 1.20657 1.21243 1.19873 1.21083 0.93002 0.90302 1.50911 0.92483 1.18973 0.92960 0.91167 0.94813 0.95311 1.21626 0.99443 0.95406 0.98545 1.22016 0.97691 0.96755 1.00939 1.21766 0.91353 0.99065 0.89150 1.48232 1.41963 1.15871 1.26885 1.19561 0.82260 0.84037 0.81712 1.90644 1.38215 1.81561 1.32878 1.22359 1.01283 0.89412 1.07121 0.85881 1.23004 1.00191 0.97274 0.97867 1.21800 0.98660 0.97622 0.93101 0.86417 1.21756 0.95861 1.00610 0.96175 1.22990 1.03589 1.01566 0.93095 1.23004 0.94510 0.99654 1.04226 1.22018 0.95087 0.81883 1.01429 0.92982 0.94589 0.88645 0.92477 0.92410 0.91984 0.90926 0.88320 0.88028 0.87571 0.88572 0.88895 0.88851 0.88413 0.90347 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 11.31 55.43 0.63 -24.43 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 13 C 0.11 1.73 6.35 -3.71 -0.02 1.70 16 14 N -0.60 -11.34 2.97 -172.71 -0.51 -11.85 16 15 C 0.54 9.98 7.48 -10.98 -0.08 9.90 16 16 O -0.55 -12.26 15.67 5.56 0.09 -12.18 16 17 C -0.18 -2.48 4.77 -91.77 -0.44 -2.92 16 18 H 0.12 1.52 6.56 -51.93 -0.34 1.18 16 19 C -0.15 -1.63 9.96 -26.71 -0.27 -1.90 16 20 C -0.09 -1.16 5.38 -90.61 -0.49 -1.64 16 21 H 0.12 1.69 7.67 -51.93 -0.40 1.29 16 22 C -0.13 -1.28 5.87 -90.62 -0.53 -1.81 16 23 C -0.18 -1.69 10.26 -26.69 -0.27 -1.97 16 24 C -0.18 -1.81 10.18 -26.69 -0.27 -2.08 16 25 C 0.12 2.58 5.66 -3.67 -0.02 2.56 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.93 5.51 -51.93 -0.29 0.64 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.87 7.01 -51.93 -0.36 1.50 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -29.99 328.56 -9.89 -39.89 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.74 Total: 2.77 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -3.28 Total: -15.32 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.28 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.99 -9.89 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.085 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds