Wall clock time and date at job start Mon Mar 30 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00138 * 2 1 4 4 H 1.48492 * 109.47229 * 269.99882 * 3 2 1 5 5 H 1.48499 * 109.46852 * 29.99883 * 3 2 1 6 6 H 1.48497 * 109.47015 * 149.99671 * 3 2 1 7 7 C 1.37876 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00273 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99734 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.49719 * 59.99802 * 9 7 2 11 11 C 1.53039 * 109.49811 * 299.93334 * 9 7 2 12 12 C 1.53042 * 109.54198 * 178.65221 * 11 9 7 13 13 C 1.53194 * 109.31117 * 61.36213 * 12 11 9 14 14 N 1.46922 * 108.77708 * 305.37114 * 13 12 11 15 15 C 1.34784 * 120.63264 * 233.63139 * 14 13 12 16 16 O 1.21277 * 120.00226 * 180.02562 * 15 14 13 17 17 C 1.50706 * 119.99411 * 359.97438 * 15 14 13 18 18 H 1.08995 * 115.55089 * 34.27724 * 17 15 14 19 19 C 1.53002 * 117.49815 * 248.61131 * 17 15 14 20 20 C 1.52996 * 117.49721 * 179.97438 * 17 15 14 21 21 H 1.09002 * 117.49712 * 0.02562 * 20 17 15 22 22 C 1.52996 * 117.49982 * 214.97901 * 20 17 15 23 23 C 1.53006 * 117.50023 * 128.74369 * 22 20 17 24 24 C 1.53002 * 117.49852 * 60.08404 * 22 20 17 25 25 C 1.46992 * 118.75940 * 53.60550 * 14 13 12 26 26 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46255 * 298.67213 * 11 9 7 28 28 H 1.08997 * 109.45914 * 58.62818 * 11 9 7 29 29 H 1.08992 * 109.50305 * 181.31811 * 12 11 9 30 30 H 1.08998 * 109.49465 * 301.41768 * 12 11 9 31 31 H 1.09004 * 109.58307 * 65.15290 * 13 12 11 32 32 H 1.08993 * 109.58780 * 185.58148 * 13 12 11 33 33 H 1.09005 * 117.49967 * 359.97438 * 19 17 15 34 34 H 1.08992 * 117.50036 * 144.99808 * 19 17 15 35 35 H 1.08999 * 115.55038 * 274.41625 * 22 20 17 36 36 H 1.08994 * 117.49743 * 0.02562 * 23 22 20 37 37 H 1.09001 * 117.49563 * 145.01803 * 23 22 20 38 38 H 1.09003 * 117.50179 * 214.97704 * 24 22 20 39 39 H 1.08995 * 117.49812 * 0.02562 * 24 22 20 40 40 H 1.09001 * 109.63362 * 186.62349 * 25 14 13 41 41 H 1.08996 * 109.58160 * 66.16954 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6245 -2.5575 -0.8895 11 6 0.3717 -2.5813 1.2504 12 6 -0.4193 -3.8914 1.2346 13 6 0.5562 -5.0724 1.2512 14 7 1.4988 -4.9230 0.1341 15 6 1.6748 -5.9214 -0.7542 16 8 2.4562 -5.7860 -1.6717 17 6 0.9014 -7.2064 -0.6063 18 1 -0.1088 -7.1041 -0.2102 19 6 1.6860 -8.4632 -0.2246 20 6 1.1451 -8.3012 -1.6469 21 1 1.8651 -8.0922 -2.4381 22 6 -0.0480 -9.1690 -2.0520 23 6 -0.3359 -9.3209 -3.5470 24 6 -1.2556 -8.4642 -2.6732 25 6 2.2460 -3.6640 0.0028 26 1 -0.4850 0.8400 -0.0004 27 1 1.0009 -2.5478 2.1399 28 1 -0.3203 -1.7394 1.2635 29 1 -1.0627 -3.9385 2.1131 30 1 -1.0300 -3.9366 0.3329 31 1 1.1045 -5.0802 2.1933 32 1 0.0030 -6.0049 1.1402 33 1 2.7617 -8.3607 -0.0808 34 1 1.1920 -9.1878 0.4226 35 1 -0.2420 -10.0298 -1.4121 36 1 0.3249 -8.8029 -4.2419 37 1 -0.7196 -10.2816 -3.8905 38 1 -2.2440 -8.8616 -2.4424 39 1 -1.1999 -7.3824 -2.7937 40 1 2.8072 -3.6670 -0.9316 41 1 2.9319 -3.5570 0.8431 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699105762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:08 Heat of formation + Delta-G solvation = -13.759835 kcal Electronic energy + Delta-G solvation = -20136.299758 eV Core-core repulsion = 17209.455459 eV Total energy + Delta-G solvation = -2926.844299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36197 -39.28012 -38.15746 -35.84872 -35.33517 -33.03342 -32.02089 -27.53910 -26.68696 -24.99659 -24.07870 -23.32521 -23.18825 -21.48301 -20.70943 -19.67224 -18.62888 -18.05070 -16.98904 -16.70716 -16.45415 -16.00405 -15.55511 -15.15343 -14.97499 -14.65332 -14.51190 -14.00035 -13.70278 -13.61624 -13.28249 -12.89875 -12.71792 -12.59986 -12.49161 -12.29503 -12.03262 -11.89305 -11.79198 -11.76769 -11.61139 -11.29887 -10.96662 -10.87505 -10.68955 -10.51670 -10.44374 -9.50624 -8.12636 -6.28323 1.39603 1.40605 1.49555 1.51728 2.06346 2.41986 2.69336 3.05639 3.13754 3.50116 3.72288 3.78909 4.01336 4.08957 4.18051 4.23617 4.29911 4.32626 4.39542 4.51777 4.53633 4.61250 4.79572 4.82291 4.82634 4.85483 4.95981 5.01657 5.05698 5.10650 5.23979 5.27036 5.29947 5.37841 5.46829 5.55465 5.59258 5.90577 6.11383 6.32160 6.56044 6.80967 7.21330 7.39988 8.91137 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030945 B = 0.004338 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.624021 B = 6453.497388 C = 6482.536669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.041 3.959 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.111 3.889 14 N -0.603 5.603 15 C 0.527 3.473 16 O -0.602 6.602 17 C -0.190 4.190 18 H 0.146 0.854 19 C -0.118 4.118 20 C -0.099 4.099 21 H 0.087 0.913 22 C -0.119 4.119 23 C -0.178 4.178 24 C -0.182 4.182 25 C 0.129 3.871 26 H 0.262 0.738 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -19.166 2.991 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.022 3.978 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.011 4.011 14 N -0.334 5.334 15 C 0.318 3.682 16 O -0.484 6.484 17 C -0.211 4.211 18 H 0.164 0.836 19 C -0.155 4.155 20 C -0.118 4.118 21 H 0.106 0.894 22 C -0.136 4.136 23 C -0.215 4.215 24 C -0.219 4.219 25 C 0.006 3.994 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.337 -18.956 2.547 19.415 hybrid contribution 0.538 1.787 -0.473 1.925 sum -2.799 -17.169 2.075 17.519 Atomic orbital electron populations 1.70007 1.07116 1.27267 1.50806 1.25695 0.95709 1.02299 0.94456 0.85587 0.78878 0.79276 0.78113 1.20592 1.20363 1.19121 1.21444 0.93071 0.91949 1.51443 0.93010 1.18873 0.93134 0.91630 0.94130 0.99871 1.21423 0.98757 0.97158 0.97038 1.21927 0.97854 0.94984 1.01855 1.22016 0.90643 0.99732 0.88678 1.48321 1.42266 1.14681 1.28110 1.20502 0.81857 0.85374 0.80504 1.90616 1.40478 1.82645 1.34695 1.22306 1.01875 0.87429 1.09461 0.83612 1.23169 0.99802 0.95472 0.97036 1.21801 0.99338 0.97516 0.93142 0.89445 1.21817 0.94395 1.00752 0.96680 1.23064 1.03189 1.02338 0.92887 1.23012 0.95708 0.98393 1.04786 1.21570 0.94581 0.82987 1.00222 0.92878 0.94303 0.91906 0.88996 0.93884 0.89961 0.86762 0.89198 0.83973 0.84656 0.90245 0.86621 0.86745 0.90916 0.93231 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 11.31 21.45 0.24 -52.66 16 2 C 0.02 0.99 5.30 84.65 0.45 1.44 16 3 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -30.66 8.56 25.60 0.22 -30.44 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.16 2.25 -11.46 -0.03 2.13 16 10 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 11 C -0.11 -4.82 4.96 30.62 0.15 -4.67 16 12 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 13 C 0.11 3.18 6.35 86.36 0.55 3.72 16 14 N -0.60 -22.74 2.97 -818.73 -2.43 -25.17 16 15 C 0.53 19.68 7.48 87.66 0.66 20.33 16 16 O -0.60 -27.91 15.67 -3.02 -0.05 -27.95 16 17 C -0.19 -4.81 4.77 -11.54 -0.06 -4.86 16 18 H 0.15 3.02 6.56 -2.39 -0.02 3.00 16 19 C -0.12 -2.22 9.96 30.60 0.30 -1.92 16 20 C -0.10 -2.30 5.38 -10.79 -0.06 -2.36 16 21 H 0.09 2.58 7.67 -2.39 -0.02 2.56 16 22 C -0.12 -2.05 5.87 -10.79 -0.06 -2.11 16 23 C -0.18 -3.13 10.26 30.62 0.31 -2.82 16 24 C -0.18 -3.36 10.18 30.62 0.31 -3.05 16 25 C 0.13 5.92 5.66 86.35 0.49 6.41 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 27 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.06 3.29 6.04 -2.39 -0.01 3.27 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.11 2.38 5.51 -2.39 -0.01 2.37 16 33 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.05 2.52 7.01 -2.39 -0.02 2.50 16 41 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -70.04 328.56 4.21 -65.83 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.00 Total: 16.16 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 3.43 Total: -22.39 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.19 Total: -77.83 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.04 4.21 -65.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699105762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.073 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds