Wall clock time and date at job start Mon Mar 30 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.93327 * 2 1 4 4 C 1.38772 * 120.09207 * 180.02562 * 3 2 1 5 5 O 1.35890 * 120.01540 * 180.02562 * 4 3 2 6 6 C 1.38611 * 119.96162 * 0.02562 * 4 3 2 7 7 C 1.38795 * 119.87491 * 359.97438 * 6 4 3 8 8 N 1.39673 * 120.04589 * 179.97438 * 7 6 4 9 9 C 1.46499 * 119.99729 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47034 * 300.00070 * 10 9 8 12 12 C 1.53002 * 109.47190 * 59.99588 * 10 9 8 13 13 C 1.52999 * 109.47191 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47113 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99917 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99931 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99761 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00158 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46991 * 90.00072 * 18 16 14 20 20 H 1.48501 * 109.47131 * 210.00244 * 18 16 14 21 21 H 1.48504 * 109.47089 * 330.00524 * 18 16 14 22 22 C 1.38105 * 119.93785 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.46951 * 269.97649 * 1 2 3 24 24 H 1.09000 * 109.47008 * 29.97780 * 1 2 3 25 25 H 1.09006 * 109.47037 * 149.97554 * 1 2 3 26 26 H 1.07997 * 119.95161 * 0.02562 * 3 2 1 27 27 H 0.96705 * 113.99927 * 269.99184 * 5 4 3 28 28 H 1.08005 * 120.06230 * 180.25248 * 6 4 3 29 29 H 0.96992 * 119.99489 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.47012 * 299.99163 * 9 8 7 31 31 H 1.08998 * 109.47527 * 60.00043 * 9 8 7 32 32 H 1.08994 * 109.47311 * 59.99884 * 11 10 9 33 33 H 1.09003 * 109.46970 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.47018 * 299.99690 * 11 10 9 35 35 H 1.09006 * 109.46985 * 60.00204 * 12 10 9 36 36 H 1.09003 * 109.47360 * 180.02562 * 12 10 9 37 37 H 1.08994 * 109.47293 * 300.00200 * 12 10 9 38 38 H 1.08992 * 109.47186 * 299.99788 * 13 10 9 39 39 H 1.08998 * 109.47115 * 60.00154 * 13 10 9 40 40 H 0.97000 * 119.99251 * 179.97438 * 17 16 14 41 41 H 1.08004 * 119.98472 * 359.97295 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1978 0.0000 4 6 3.5845 1.2017 -0.0005 5 8 4.2610 2.3802 0.0000 6 6 4.2800 0.0027 -0.0016 7 6 3.5860 -1.1992 -0.0016 8 7 4.2833 -2.4094 -0.0032 9 6 5.7482 -2.4106 -0.0044 10 6 6.2570 -3.8536 -0.0054 11 6 5.7473 -4.5750 1.2439 12 6 5.7453 -4.5739 -1.2545 13 6 7.7870 -3.8550 -0.0072 14 6 8.2880 -5.2763 -0.0076 15 1 7.5854 -6.0966 -0.0071 16 6 9.6433 -5.5294 -0.0087 17 7 10.0806 -6.7698 -0.0085 18 14 10.8585 -4.1107 -0.0103 19 1 11.1817 -3.7342 1.3893 20 1 12.1008 -4.5238 -0.7113 21 1 10.2590 -2.9462 -0.7103 22 6 2.1963 -1.1968 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6549 2.1320 0.0004 27 1 4.4565 2.7219 -0.8833 28 1 5.3601 0.0038 0.0021 29 1 3.7975 -3.2489 -0.0029 30 1 6.1113 -1.8964 -0.8943 31 1 6.1128 -1.8979 0.8858 32 1 4.6573 -4.5740 1.2448 33 1 6.1093 -5.6031 1.2430 34 1 6.1118 -4.0619 2.1338 35 1 6.1084 -4.0600 -2.1446 36 1 6.1073 -5.6021 -1.2551 37 1 4.6553 -4.5729 -1.2537 38 1 8.1497 -3.3413 -0.8975 39 1 8.1518 -3.3418 0.8825 40 1 11.0341 -6.9478 -0.0096 41 1 1.6550 -2.1314 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705591522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:50 Heat of formation + Delta-G solvation = -39.645566 kcal Electronic energy + Delta-G solvation = -19631.904929 eV Core-core repulsion = 16703.938140 eV Total energy + Delta-G solvation = -2927.966789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89944 -38.02106 -36.81740 -34.55615 -32.37127 -31.20781 -29.19379 -27.67264 -26.96780 -26.56484 -25.66497 -22.53613 -22.29931 -20.57789 -18.56135 -17.79108 -16.92942 -16.34274 -16.13967 -15.60688 -14.72550 -14.45255 -14.39704 -13.90670 -13.69131 -13.48527 -13.11330 -12.91031 -12.75173 -12.62924 -12.29671 -11.88925 -11.72212 -11.51846 -11.24644 -11.13383 -11.02367 -10.64686 -10.59780 -10.46825 -10.04779 -9.79276 -9.66644 -9.54196 -9.02220 -8.56263 -8.55442 -7.28839 -6.06683 -4.04105 1.33110 1.61632 3.28647 3.36766 3.39357 3.58300 3.74206 4.26483 4.42694 4.80404 5.14951 5.22759 5.25588 5.30426 5.33209 5.46710 5.48224 5.52984 5.58913 5.69316 5.84222 5.90498 6.04538 6.08218 6.13761 6.30174 6.34595 6.50377 6.54717 6.58116 6.61687 6.72904 6.86697 6.99347 7.02685 7.15971 7.33032 7.41541 7.69145 7.76118 7.89680 8.50579 8.97474 9.55766 11.06149 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.004144 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.754269 B = 6754.964953 C = 7497.539300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.026 4.026 3 C -0.216 4.216 4 C 0.153 3.847 5 O -0.503 6.503 6 C -0.233 4.233 7 C 0.244 3.756 8 N -0.734 5.734 9 C 0.129 3.871 10 C -0.061 4.061 11 C -0.128 4.128 12 C -0.127 4.127 13 C -0.002 4.002 14 C -0.512 4.512 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.212 4.212 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.389 0.611 28 H 0.127 0.873 29 H 0.401 0.599 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.262 0.738 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.247 13.565 -1.643 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.027 4.027 3 C -0.236 4.236 4 C 0.108 3.892 5 O -0.313 6.313 6 C -0.256 4.256 7 C 0.138 3.862 8 N -0.362 5.362 9 C 0.005 3.995 10 C -0.062 4.062 11 C -0.185 4.185 12 C -0.185 4.185 13 C -0.039 4.039 14 C -0.549 4.549 15 H 0.096 0.904 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.235 4.235 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.245 0.755 28 H 0.145 0.855 29 H 0.237 0.763 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.877 13.389 -1.036 20.795 hybrid contribution 0.814 0.443 -0.454 1.032 sum -15.063 13.833 -1.490 20.505 Atomic orbital electron populations 1.20789 0.91293 1.02595 1.02305 1.19403 0.95462 0.92102 0.95731 1.20897 0.93129 0.97848 1.11755 1.18129 0.89598 0.84438 0.96996 1.84780 1.76898 1.36203 1.33404 1.20857 1.00375 0.90734 1.13682 1.17658 0.90786 0.86424 0.91370 1.45008 1.06257 1.04776 1.80165 1.21631 0.78628 0.98796 1.00478 1.20651 0.98433 0.91301 0.95787 1.21760 0.97778 1.02249 0.96742 1.21756 0.97756 1.02252 0.96713 1.19590 0.89492 0.98484 0.96374 1.21080 0.92355 0.91055 1.50445 0.90420 1.25007 0.98445 0.95276 0.94730 1.69906 1.14436 1.18636 1.51279 0.86848 0.80931 0.83409 0.78497 1.20357 1.21468 1.19082 1.20439 0.91932 0.98004 1.13141 0.91115 0.91625 0.91529 0.86305 0.75531 0.85534 0.76313 0.92602 0.92568 0.94939 0.90973 0.93473 0.93497 0.90975 0.94941 0.96462 0.96893 0.92773 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.03 -0.30 5.87 -104.68 -0.61 -0.91 16 3 C -0.22 -2.57 9.63 -39.39 -0.38 -2.95 16 4 C 0.15 2.00 6.70 -39.25 -0.26 1.74 16 5 O -0.50 -5.88 13.50 -19.39 -0.26 -6.14 16 6 C -0.23 -3.29 9.25 -39.24 -0.36 -3.65 16 7 C 0.24 3.38 6.65 -83.81 -0.56 2.82 16 8 N -0.73 -10.25 5.13 -58.65 -0.30 -10.55 16 9 C 0.13 2.03 3.80 -4.04 -0.02 2.02 16 10 C -0.06 -1.11 0.54 -154.50 -0.08 -1.19 16 11 C -0.13 -2.25 8.05 37.16 0.30 -1.96 16 12 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 13 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 14 C -0.51 -13.65 8.21 -34.44 -0.28 -13.93 16 15 H 0.08 2.20 5.92 -52.48 -0.31 1.89 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 18 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.21 -2.61 9.54 -39.36 -0.38 -2.99 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.46 8.08 -51.93 -0.42 0.05 16 25 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.39 2.62 9.06 45.56 0.41 3.04 16 28 H 0.13 1.82 6.73 -52.48 -0.35 1.46 16 29 H 0.40 5.22 6.18 -40.82 -0.25 4.96 16 30 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 31 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 33 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 37 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -30.39 326.23 -7.32 -37.71 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.62 Total: 5.67 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.16 Total: -21.85 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.47 Total: -36.94 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.26 Total: -6.14 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.39 -7.32 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705591522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.940 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds