Wall clock time and date at job start Mon Mar 30 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38223 * 119.93327 * 2 1 4 4 C 1.38772 * 120.09207 * 180.02562 * 3 2 1 5 5 O 1.35890 * 120.01540 * 180.02562 * 4 3 2 6 6 C 1.38611 * 119.96162 * 0.02562 * 4 3 2 7 7 C 1.38795 * 119.87491 * 359.97438 * 6 4 3 8 8 N 1.39673 * 120.04589 * 179.97438 * 7 6 4 9 9 C 1.46499 * 119.99729 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.46807 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47034 * 300.00070 * 10 9 8 12 12 C 1.53002 * 109.47190 * 59.99588 * 10 9 8 13 13 C 1.52999 * 109.47191 * 179.97438 * 10 9 8 14 14 C 1.50701 * 109.47113 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99917 * 0.02562 * 14 13 10 16 16 C 1.37875 * 119.99931 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99761 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00158 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46991 * 90.00072 * 18 16 14 20 20 H 1.48501 * 109.47131 * 210.00244 * 18 16 14 21 21 H 1.48504 * 109.47089 * 330.00524 * 18 16 14 22 22 C 1.38105 * 119.93785 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.46951 * 269.97649 * 1 2 3 24 24 H 1.09000 * 109.47008 * 29.97780 * 1 2 3 25 25 H 1.09006 * 109.47037 * 149.97554 * 1 2 3 26 26 H 1.07997 * 119.95161 * 0.02562 * 3 2 1 27 27 H 0.96705 * 113.99927 * 269.99184 * 5 4 3 28 28 H 1.08005 * 120.06230 * 180.25248 * 6 4 3 29 29 H 0.96992 * 119.99489 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.47012 * 299.99163 * 9 8 7 31 31 H 1.08998 * 109.47527 * 60.00043 * 9 8 7 32 32 H 1.08994 * 109.47311 * 59.99884 * 11 10 9 33 33 H 1.09003 * 109.46970 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.47018 * 299.99690 * 11 10 9 35 35 H 1.09006 * 109.46985 * 60.00204 * 12 10 9 36 36 H 1.09003 * 109.47360 * 180.02562 * 12 10 9 37 37 H 1.08994 * 109.47293 * 300.00200 * 12 10 9 38 38 H 1.08992 * 109.47186 * 299.99788 * 13 10 9 39 39 H 1.08998 * 109.47115 * 60.00154 * 13 10 9 40 40 H 0.97000 * 119.99251 * 179.97438 * 17 16 14 41 41 H 1.08004 * 119.98472 * 359.97295 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1978 0.0000 4 6 3.5845 1.2017 -0.0005 5 8 4.2610 2.3802 0.0000 6 6 4.2800 0.0027 -0.0016 7 6 3.5860 -1.1992 -0.0016 8 7 4.2833 -2.4094 -0.0032 9 6 5.7482 -2.4106 -0.0044 10 6 6.2570 -3.8536 -0.0054 11 6 5.7473 -4.5750 1.2439 12 6 5.7453 -4.5739 -1.2545 13 6 7.7870 -3.8550 -0.0072 14 6 8.2880 -5.2763 -0.0076 15 1 7.5854 -6.0966 -0.0071 16 6 9.6433 -5.5294 -0.0087 17 7 10.0806 -6.7698 -0.0085 18 14 10.8585 -4.1107 -0.0103 19 1 11.1817 -3.7342 1.3893 20 1 12.1008 -4.5238 -0.7113 21 1 10.2590 -2.9462 -0.7103 22 6 2.1963 -1.1968 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6549 2.1320 0.0004 27 1 4.4565 2.7219 -0.8833 28 1 5.3601 0.0038 0.0021 29 1 3.7975 -3.2489 -0.0029 30 1 6.1113 -1.8964 -0.8943 31 1 6.1128 -1.8979 0.8858 32 1 4.6573 -4.5740 1.2448 33 1 6.1093 -5.6031 1.2430 34 1 6.1118 -4.0619 2.1338 35 1 6.1084 -4.0600 -2.1446 36 1 6.1073 -5.6021 -1.2551 37 1 4.6553 -4.5729 -1.2537 38 1 8.1497 -3.3413 -0.8975 39 1 8.1518 -3.3418 0.8825 40 1 11.0341 -6.9478 -0.0096 41 1 1.6550 -2.1314 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705591522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:49 Heat of formation + Delta-G solvation = -59.123266 kcal Electronic energy + Delta-G solvation = -19632.749545 eV Core-core repulsion = 16703.938140 eV Total energy + Delta-G solvation = -2928.811405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86520 -39.30679 -37.82936 -35.77479 -34.31704 -32.18601 -30.42640 -29.32486 -28.01957 -27.83339 -26.92343 -24.30857 -23.24394 -21.62735 -19.85919 -18.95318 -18.86735 -17.33328 -17.23160 -16.65116 -16.22300 -15.87295 -15.59222 -15.24523 -15.03839 -14.57067 -14.32401 -14.18660 -14.16618 -13.89271 -13.35655 -13.18555 -12.85181 -12.82107 -12.55073 -12.51933 -12.37926 -12.31567 -12.12605 -11.76293 -11.53478 -11.47025 -11.17360 -10.91873 -10.72675 -10.71385 -9.46787 -8.31689 -8.23650 -6.24364 0.41021 0.67164 1.35647 1.37601 1.47758 2.38086 2.50449 2.82309 3.11734 3.39714 3.90652 3.98307 4.05068 4.16209 4.31946 4.37881 4.51517 4.59093 4.65922 4.70781 4.71005 4.82279 4.90414 4.93218 5.00267 5.06255 5.06733 5.21848 5.28300 5.37063 5.37988 5.39651 5.52024 5.58151 5.66340 5.72909 5.75042 5.88756 6.32978 6.41188 6.82658 6.87296 6.91960 7.38464 8.92246 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.004144 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.754269 B = 6754.964953 C = 7497.539300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.026 4.026 3 C -0.220 4.220 4 C 0.147 3.853 5 O -0.514 6.514 6 C -0.255 4.255 7 C 0.231 3.769 8 N -0.733 5.733 9 C 0.144 3.856 10 C -0.058 4.058 11 C -0.122 4.122 12 C -0.121 4.121 13 C -0.002 4.002 14 C -0.505 4.505 15 H 0.048 0.952 16 C 0.004 3.996 17 N -0.953 5.953 18 Si 0.938 3.062 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.248 1.248 22 C -0.217 4.217 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.135 0.865 27 H 0.409 0.591 28 H 0.117 0.883 29 H 0.405 0.595 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.204 15.877 -1.792 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.027 4.027 3 C -0.240 4.240 4 C 0.102 3.898 5 O -0.327 6.327 6 C -0.278 4.278 7 C 0.126 3.874 8 N -0.362 5.362 9 C 0.020 3.980 10 C -0.058 4.058 11 C -0.180 4.180 12 C -0.179 4.179 13 C -0.040 4.040 14 C -0.543 4.543 15 H 0.066 0.934 16 C -0.193 4.193 17 N -0.595 5.595 18 Si 0.762 3.238 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.172 1.172 22 C -0.240 4.240 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.153 0.847 27 H 0.268 0.732 28 H 0.135 0.865 29 H 0.243 0.757 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.864 15.734 -1.199 23.835 hybrid contribution 1.310 -0.254 -0.413 1.397 sum -16.553 15.480 -1.612 22.721 Atomic orbital electron populations 1.20854 0.88908 1.03826 1.03249 1.19800 0.97216 0.91505 0.94195 1.21166 0.92797 0.98921 1.11120 1.18272 0.90216 0.84473 0.96847 1.84721 1.76878 1.35716 1.35356 1.20928 1.00118 0.91569 1.15206 1.17793 0.91474 0.86006 0.92138 1.44778 1.05189 1.05262 1.80998 1.21276 0.79985 0.96422 1.00350 1.20528 0.95649 0.93307 0.96344 1.21677 0.99711 1.00168 0.96399 1.21669 0.99703 1.00150 0.96341 1.19554 0.92739 0.95462 0.96198 1.21386 0.91856 0.92601 1.48439 0.93398 1.25882 1.00702 0.97701 0.94967 1.70056 1.14793 1.20980 1.53623 0.85845 0.78414 0.80647 0.78861 1.19712 1.21486 1.17189 1.20685 0.91374 0.99193 1.12734 0.90165 0.90319 0.90477 0.84701 0.73198 0.86515 0.75737 0.92636 0.92983 0.91856 0.93951 0.93701 0.93540 0.93983 0.91832 0.96438 0.96776 0.92851 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.03 -0.52 5.87 -19.90 -0.12 -0.64 16 3 C -0.22 -4.68 9.63 22.39 0.22 -4.46 16 4 C 0.15 3.58 6.70 22.49 0.15 3.73 16 5 O -0.51 -11.15 13.50 -92.31 -1.25 -12.40 16 6 C -0.25 -6.86 9.25 22.49 0.21 -6.65 16 7 C 0.23 5.95 6.65 38.20 0.25 6.20 16 8 N -0.73 -18.96 5.13 -339.46 -1.74 -20.70 16 9 C 0.14 4.35 3.80 86.38 0.33 4.68 16 10 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 11 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 12 C -0.12 -4.15 8.05 71.98 0.58 -3.58 16 13 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 14 C -0.50 -27.56 8.21 25.60 0.21 -27.35 16 15 H 0.05 2.85 5.92 -2.91 -0.02 2.83 16 16 C 0.00 0.20 5.47 84.65 0.46 0.67 16 17 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 18 Si 0.94 44.05 27.47 68.60 1.88 45.94 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 22 C -0.22 -4.77 9.54 22.41 0.21 -4.56 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 25 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 26 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 27 H 0.41 4.79 9.06 -74.05 -0.67 4.12 16 28 H 0.12 3.28 6.73 -2.91 -0.02 3.26 16 29 H 0.41 9.49 6.18 -92.71 -0.57 8.91 16 30 H 0.06 1.68 7.95 -2.39 -0.02 1.66 16 31 H 0.05 1.62 7.94 -2.39 -0.02 1.60 16 32 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 33 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 37 H 0.06 1.75 6.86 -2.39 -0.02 1.74 16 38 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 39 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -66.22 326.23 2.79 -63.43 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.27 Total: 20.90 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 3.86 Total: -38.40 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.44 Total: -79.47 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.25 Total: -12.40 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Total: -66.22 2.79 -63.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705591522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.305 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds