Wall clock time and date at job start Mon Mar 30 2020 07:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47302 * 2 1 4 4 C 1.38121 * 120.03195 * 265.27868 * 3 2 1 5 5 C 1.38282 * 120.06642 * 180.31980 * 4 3 2 6 6 C 1.38322 * 120.14010 * 359.67290 * 5 4 3 7 7 C 1.38079 * 120.06456 * 0.02562 * 6 5 4 8 8 C 1.50709 * 120.03324 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47036 * 265.02218 * 8 7 6 10 10 H 1.09005 * 109.46934 * 54.99635 * 9 8 7 11 11 N 1.46897 * 109.46991 * 295.00159 * 9 8 7 12 12 C 1.52997 * 109.47165 * 174.99718 * 9 8 7 13 13 C 1.52993 * 109.47055 * 185.00048 * 12 9 8 14 14 C 1.38860 * 120.03606 * 84.99597 * 3 2 1 15 15 O 1.35744 * 120.06668 * 359.97438 * 14 3 2 16 16 C 1.34831 * 117.00093 * 269.72173 * 15 14 3 17 17 H 1.08002 * 120.00204 * 0.02562 * 16 15 14 18 18 C 1.38656 * 119.99792 * 179.72515 * 16 15 14 19 19 N 1.31554 * 120.00408 * 0.27825 * 18 16 15 20 20 Si 1.86803 * 119.99741 * 180.27952 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00115 * 20 18 16 23 23 H 1.48503 * 109.47284 * 329.99811 * 20 18 16 24 24 H 1.09001 * 109.46856 * 60.00175 * 1 2 3 25 25 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47481 * 300.00516 * 1 2 3 27 27 H 1.08998 * 109.47125 * 239.99893 * 2 1 3 28 28 H 1.09001 * 109.46856 * 119.99825 * 2 1 3 29 29 H 1.08000 * 119.96873 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.93138 * 179.69795 * 5 4 3 31 31 H 1.07998 * 119.96943 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.46883 * 25.02139 * 8 7 6 33 33 H 1.08996 * 109.46800 * 145.02077 * 8 7 6 34 34 H 1.00900 * 111.00043 * 299.99548 * 11 9 8 35 35 H 1.00902 * 111.00272 * 63.95388 * 11 9 8 36 36 H 1.09004 * 109.47128 * 305.00649 * 12 9 8 37 37 H 1.09000 * 109.46784 * 64.99951 * 12 9 8 38 38 H 1.09000 * 109.47404 * 60.00283 * 13 12 9 39 39 H 1.09003 * 109.46772 * 180.02562 * 13 12 9 40 40 H 1.08999 * 109.47024 * 299.99932 * 13 12 9 41 41 H 0.97005 * 120.00115 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3556 2.0397 -1.1917 5 6 2.8230 3.3412 -1.1920 6 6 2.9618 4.0296 -0.0003 7 6 2.6344 3.4184 1.1938 8 6 2.7866 4.1688 2.4919 9 6 4.1441 3.8389 3.1157 10 1 4.9354 4.0498 2.3962 11 7 4.1820 2.4168 3.4821 12 6 4.3516 4.6939 4.3673 13 6 5.7581 4.4557 4.9203 14 6 2.1653 2.1111 1.1975 15 8 1.8424 1.5076 2.3698 16 6 0.5702 1.6396 2.7963 17 1 -0.1395 2.2056 2.2111 18 6 0.1714 1.0437 3.9830 19 7 1.0358 0.3539 4.6956 20 14 -1.5932 1.2201 4.5699 21 1 -2.4098 0.1059 4.0251 22 1 -1.6277 1.1795 6.0540 23 1 -2.1449 2.5153 4.0973 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2478 1.5051 -2.1239 30 1 3.0797 3.8214 -2.1247 31 1 3.3267 5.0461 -0.0038 32 1 2.7250 5.2403 2.3014 33 1 1.9910 3.8752 3.1766 34 1 3.4574 2.1958 4.1486 35 1 4.1118 1.8306 2.6639 36 1 4.2352 5.7470 4.1114 37 1 3.6136 4.4195 5.1211 38 1 6.4962 4.7300 4.1665 39 1 5.9057 5.0645 5.8123 40 1 5.8743 3.4026 5.1762 41 1 0.7568 -0.0627 5.5261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709319844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:55 Heat of formation + Delta-G solvation = -32.957323 kcal Electronic energy + Delta-G solvation = -20982.958675 eV Core-core repulsion = 18055.281910 eV Total energy + Delta-G solvation = -2927.676765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.55494 -36.39052 -36.18489 -33.44976 -32.00098 -31.05036 -29.76576 -28.37019 -26.87806 -24.75263 -23.51059 -23.03267 -20.87505 -20.15580 -19.37601 -17.91556 -16.45581 -15.69523 -15.22506 -14.91327 -14.32632 -14.04364 -13.66866 -13.55782 -13.31160 -13.03048 -12.72479 -12.49890 -12.20639 -11.99131 -11.72390 -11.61749 -11.41279 -11.26697 -11.11121 -10.92386 -10.74028 -10.61806 -10.43325 -10.36980 -10.17814 -10.14602 -9.62800 -9.55341 -8.23353 -8.15018 -7.70469 -7.54659 -6.11966 -3.78662 1.95629 2.01150 3.21051 3.26570 3.28235 4.11302 4.39971 5.18662 5.24073 5.33343 5.36250 5.42103 5.55607 5.56625 5.68298 5.77511 5.84669 5.93091 6.03414 6.08813 6.13695 6.17023 6.20822 6.26718 6.35039 6.40618 6.53504 6.58384 6.67176 6.76462 6.78780 6.79903 6.98536 7.04420 7.06506 7.19024 7.34890 7.43325 7.66110 8.19111 8.29181 8.52764 9.32223 10.04582 11.06211 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.010294 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.289736 B = 2719.443924 C = 4322.298922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C -0.109 4.109 4 C -0.118 4.118 5 C -0.148 4.148 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.109 4.109 9 C 0.103 3.897 10 H 0.063 0.937 11 N -0.835 5.835 12 C -0.114 4.114 13 C -0.140 4.140 14 C 0.140 3.860 15 O -0.233 6.233 16 C -0.356 4.356 17 H 0.064 0.936 18 C 0.035 3.965 19 N -0.875 5.875 20 Si 0.919 3.081 21 H -0.280 1.280 22 H -0.282 1.282 23 H -0.275 1.275 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.359 0.641 35 H 0.341 0.659 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 5.444 -6.122 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.110 4.110 4 C -0.136 4.136 5 C -0.166 4.166 6 C -0.136 4.136 7 C -0.113 4.113 8 C -0.148 4.148 9 C -0.010 4.010 10 H 0.081 0.919 11 N -0.366 5.366 12 C -0.152 4.152 13 C -0.197 4.197 14 C 0.095 3.905 15 O -0.146 6.146 16 C -0.433 4.433 17 H 0.082 0.918 18 C -0.165 4.165 19 N -0.516 5.516 20 Si 0.746 3.254 21 H -0.206 1.206 22 H -0.208 1.208 23 H -0.200 1.200 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.958 5.379 -5.529 8.670 hybrid contribution -2.059 0.232 -0.452 2.121 sum 1.899 5.611 -5.981 8.417 Atomic orbital electron populations 1.21810 0.95184 1.00971 1.02586 1.20263 0.96184 0.92419 1.01827 1.20421 1.00457 0.97399 0.92681 1.20799 1.00923 0.95064 0.96856 1.20850 1.03258 0.95192 0.97315 1.20784 1.01479 0.99272 0.92058 1.20335 1.01589 0.94283 0.95065 1.21366 1.00640 0.97918 0.94922 1.21310 0.94157 0.90592 0.94939 0.91877 1.59172 1.56086 1.02354 1.18994 1.21515 0.97789 0.98260 0.97628 1.21633 0.96256 1.02534 0.99317 1.18803 0.94366 0.89712 0.87615 1.83812 1.28879 1.70815 1.31051 1.20667 0.83731 1.33348 1.05539 0.91822 1.24873 0.98315 0.97370 0.95983 1.69972 1.33304 1.33775 1.14548 0.86057 0.82737 0.78403 0.78240 1.20583 1.20797 1.20045 0.94307 0.93549 0.90042 0.92978 0.90004 0.87100 0.87191 0.87143 0.92616 0.89330 0.82588 0.84564 0.92780 0.91988 0.93701 0.94118 0.91349 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.90 37.16 0.37 -2.36 16 2 C -0.07 -1.31 5.77 -27.88 -0.16 -1.47 16 3 C -0.11 -2.14 5.15 -104.43 -0.54 -2.68 16 4 C -0.12 -2.02 9.68 -39.61 -0.38 -2.40 16 5 C -0.15 -2.38 10.04 -39.53 -0.40 -2.78 16 6 C -0.12 -2.01 9.68 -39.61 -0.38 -2.39 16 7 C -0.11 -2.18 4.87 -104.43 -0.51 -2.69 16 8 C -0.11 -2.03 4.77 -27.88 -0.13 -2.16 16 9 C 0.10 1.80 2.79 -67.71 -0.19 1.61 16 10 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 11 N -0.83 -16.79 7.97 -4.67 -0.04 -16.82 16 12 C -0.11 -1.78 5.58 -26.74 -0.15 -1.93 16 13 C -0.14 -2.02 9.80 37.15 0.36 -1.65 16 14 C 0.14 3.02 4.41 -39.11 -0.17 2.84 16 15 O -0.23 -5.67 6.02 0.07 0.00 -5.67 16 16 C -0.36 -9.12 7.08 30.89 0.22 -8.91 16 17 H 0.06 1.65 7.45 -52.49 -0.39 1.26 16 18 C 0.03 0.91 5.49 -17.52 -0.10 0.81 16 19 N -0.88 -24.21 13.67 55.48 0.76 -23.45 16 20 Si 0.92 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.74 5.69 -51.93 -0.30 1.44 16 27 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 28 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.06 0.91 8.05 -51.93 -0.42 0.50 16 33 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 34 H 0.36 8.22 8.43 -39.29 -0.33 7.89 16 35 H 0.34 7.38 6.56 -39.29 -0.26 7.12 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -26.17 329.70 -8.13 -34.30 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -6.64 Total: 17.19 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -2.16 Total: -26.14 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.72 Total: -40.27 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 0.00 Total: -5.67 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.17 -8.13 -34.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709319844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.346 kcal (2) G-P(sol) polarization free energy of solvation -26.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds