Wall clock time and date at job start Mon Mar 30 2020 07:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47302 * 2 1 4 4 C 1.38121 * 120.03195 * 265.27868 * 3 2 1 5 5 C 1.38282 * 120.06642 * 180.31980 * 4 3 2 6 6 C 1.38322 * 120.14010 * 359.67290 * 5 4 3 7 7 C 1.38079 * 120.06456 * 0.02562 * 6 5 4 8 8 C 1.50709 * 120.03324 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47036 * 265.02218 * 8 7 6 10 10 H 1.09005 * 109.46934 * 54.99635 * 9 8 7 11 11 N 1.46897 * 109.46991 * 295.00159 * 9 8 7 12 12 C 1.52997 * 109.47165 * 174.99718 * 9 8 7 13 13 C 1.52993 * 109.47055 * 185.00048 * 12 9 8 14 14 C 1.38860 * 120.03606 * 84.99597 * 3 2 1 15 15 O 1.35744 * 120.06668 * 359.97438 * 14 3 2 16 16 C 1.34831 * 117.00093 * 269.72173 * 15 14 3 17 17 H 1.08002 * 120.00204 * 0.02562 * 16 15 14 18 18 C 1.38656 * 119.99792 * 179.72515 * 16 15 14 19 19 N 1.31554 * 120.00408 * 0.27825 * 18 16 15 20 20 Si 1.86803 * 119.99741 * 180.27952 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00115 * 20 18 16 23 23 H 1.48503 * 109.47284 * 329.99811 * 20 18 16 24 24 H 1.09001 * 109.46856 * 60.00175 * 1 2 3 25 25 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47481 * 300.00516 * 1 2 3 27 27 H 1.08998 * 109.47125 * 239.99893 * 2 1 3 28 28 H 1.09001 * 109.46856 * 119.99825 * 2 1 3 29 29 H 1.08000 * 119.96873 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.93138 * 179.69795 * 5 4 3 31 31 H 1.07998 * 119.96943 * 180.02562 * 6 5 4 32 32 H 1.08995 * 109.46883 * 25.02139 * 8 7 6 33 33 H 1.08996 * 109.46800 * 145.02077 * 8 7 6 34 34 H 1.00900 * 111.00043 * 299.99548 * 11 9 8 35 35 H 1.00902 * 111.00272 * 63.95388 * 11 9 8 36 36 H 1.09004 * 109.47128 * 305.00649 * 12 9 8 37 37 H 1.09000 * 109.46784 * 64.99951 * 12 9 8 38 38 H 1.09000 * 109.47404 * 60.00283 * 13 12 9 39 39 H 1.09003 * 109.46772 * 180.02562 * 13 12 9 40 40 H 1.08999 * 109.47024 * 299.99932 * 13 12 9 41 41 H 0.97005 * 120.00115 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3556 2.0397 -1.1917 5 6 2.8230 3.3412 -1.1920 6 6 2.9618 4.0296 -0.0003 7 6 2.6344 3.4184 1.1938 8 6 2.7866 4.1688 2.4919 9 6 4.1441 3.8389 3.1157 10 1 4.9354 4.0498 2.3962 11 7 4.1820 2.4168 3.4821 12 6 4.3516 4.6939 4.3673 13 6 5.7581 4.4557 4.9203 14 6 2.1653 2.1111 1.1975 15 8 1.8424 1.5076 2.3698 16 6 0.5702 1.6396 2.7963 17 1 -0.1395 2.2056 2.2111 18 6 0.1714 1.0437 3.9830 19 7 1.0358 0.3539 4.6956 20 14 -1.5932 1.2201 4.5699 21 1 -2.4098 0.1059 4.0251 22 1 -1.6277 1.1795 6.0540 23 1 -2.1449 2.5153 4.0973 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2478 1.5051 -2.1239 30 1 3.0797 3.8214 -2.1247 31 1 3.3267 5.0461 -0.0038 32 1 2.7250 5.2403 2.3014 33 1 1.9910 3.8752 3.1766 34 1 3.4574 2.1958 4.1486 35 1 4.1118 1.8306 2.6639 36 1 4.2352 5.7470 4.1114 37 1 3.6136 4.4195 5.1211 38 1 6.4962 4.7300 4.1665 39 1 5.9057 5.0645 5.8123 40 1 5.8743 3.4026 5.1762 41 1 0.7568 -0.0627 5.5261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709319844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:55 Heat of formation + Delta-G solvation = -46.748343 kcal Electronic energy + Delta-G solvation = -20983.556698 eV Core-core repulsion = 18055.281910 eV Total energy + Delta-G solvation = -2928.274788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05839 -37.89078 -37.76626 -34.89067 -33.92713 -32.43478 -31.22964 -29.87118 -28.34027 -26.67412 -24.87517 -24.48012 -22.31990 -21.55137 -20.83489 -19.74793 -18.18064 -17.17952 -16.69698 -16.42837 -16.01048 -15.51752 -15.15740 -15.12043 -14.77196 -14.49859 -14.16259 -14.00062 -13.72280 -13.49168 -13.28114 -13.21388 -12.93822 -12.78032 -12.55433 -12.43329 -12.26910 -12.20099 -12.03622 -11.70920 -11.67931 -11.62046 -11.31851 -11.12820 -10.17237 -9.62304 -9.19852 -9.07681 -8.11159 -5.79285 0.55321 0.57473 1.39540 1.40685 1.49369 2.31895 2.91159 3.21380 3.82559 3.85683 3.95650 4.05882 4.15849 4.22330 4.38275 4.41673 4.46558 4.51890 4.63371 4.69418 4.74490 4.78269 4.84329 4.90584 4.98808 5.11883 5.14481 5.17206 5.21948 5.28110 5.33965 5.40141 5.51667 5.52920 5.55928 5.67650 5.75624 5.97922 6.20920 6.27664 6.59854 6.71792 7.32710 8.21234 9.09080 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.010294 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.289736 B = 2719.443924 C = 4322.298922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.127 4.127 8 C -0.101 4.101 9 C 0.105 3.895 10 H 0.074 0.926 11 N -0.832 5.832 12 C -0.111 4.111 13 C -0.135 4.135 14 C 0.097 3.903 15 O -0.250 6.250 16 C -0.342 4.342 17 H 0.053 0.947 18 C -0.017 4.017 19 N -0.914 5.914 20 Si 0.977 3.023 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.269 1.269 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.340 0.660 35 H 0.329 0.671 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.460 7.276 -8.523 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.135 4.135 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.127 4.127 8 C -0.141 4.141 9 C -0.007 4.007 10 H 0.092 0.908 11 N -0.360 5.360 12 C -0.149 4.149 13 C -0.192 4.192 14 C 0.053 3.947 15 O -0.163 6.163 16 C -0.419 4.419 17 H 0.071 0.929 18 C -0.213 4.213 19 N -0.558 5.558 20 Si 0.802 3.198 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.194 1.194 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.329 7.234 -7.956 11.591 hybrid contribution -2.101 -0.267 0.129 2.122 sum 2.228 6.967 -7.826 10.712 Atomic orbital electron populations 1.21729 0.95002 1.01555 1.01714 1.20215 0.96342 0.92413 1.01372 1.20599 1.01288 0.97686 0.93225 1.21149 0.99796 0.95731 0.96806 1.21331 1.00856 0.94583 0.98545 1.21140 1.00584 1.00554 0.91324 1.20486 1.02070 0.93773 0.96408 1.21261 0.99632 0.99138 0.94036 1.21413 0.93963 0.89281 0.96059 0.90802 1.59216 1.54924 1.03891 1.17960 1.21514 0.98036 0.99175 0.96164 1.21579 0.95654 1.01505 1.00485 1.19173 0.96966 0.91220 0.87369 1.83818 1.28049 1.71576 1.32849 1.20729 0.84399 1.31761 1.04992 0.92897 1.25658 1.01795 0.97556 0.96254 1.70109 1.35086 1.35572 1.15039 0.85160 0.78577 0.78507 0.77598 1.20125 1.20683 1.19417 0.92253 0.92275 0.93602 0.89913 0.93813 0.84056 0.83134 0.84189 0.90187 0.93318 0.84763 0.85840 0.90261 0.94009 0.92405 0.92243 0.93548 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.90 71.98 0.71 -4.51 16 2 C -0.07 -2.48 5.77 29.85 0.17 -2.31 16 3 C -0.13 -4.92 5.15 -19.74 -0.10 -5.02 16 4 C -0.12 -3.61 9.68 22.25 0.22 -3.39 16 5 C -0.14 -3.76 10.04 22.30 0.22 -3.53 16 6 C -0.12 -3.64 9.68 22.25 0.22 -3.42 16 7 C -0.13 -4.84 4.87 -19.74 -0.10 -4.93 16 8 C -0.10 -3.75 4.77 29.85 0.14 -3.61 16 9 C 0.11 3.66 2.79 44.92 0.13 3.79 16 10 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 11 N -0.83 -34.85 7.97 -168.68 -1.34 -36.19 16 12 C -0.11 -3.38 5.58 30.59 0.17 -3.21 16 13 C -0.13 -3.73 9.80 71.98 0.71 -3.02 16 14 C 0.10 4.25 4.41 22.58 0.10 4.35 16 15 O -0.25 -12.80 6.02 -22.68 -0.14 -12.93 16 16 C -0.34 -18.33 7.08 67.92 0.48 -17.85 16 17 H 0.05 2.87 7.45 -2.91 -0.02 2.85 16 18 C -0.02 -0.93 5.49 84.83 0.47 -0.47 16 19 N -0.91 -53.22 13.67 21.61 0.30 -52.92 16 20 Si 0.98 43.73 29.55 68.60 2.03 45.75 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 2.00 5.69 -2.39 -0.01 1.98 16 27 H 0.08 2.53 8.05 -2.39 -0.02 2.51 16 28 H 0.04 1.95 7.70 -2.39 -0.02 1.93 16 29 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 33 H 0.05 2.19 7.01 -2.39 -0.02 2.17 16 34 H 0.34 16.61 8.43 -89.69 -0.76 15.85 16 35 H 0.33 14.95 6.56 -89.69 -0.59 14.37 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.47 7.75 -2.39 -0.02 1.46 16 41 H 0.26 14.39 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -59.98 329.70 4.05 -55.94 By element: Atomic # 1 Polarization: 47.84 SS G_CDS: -0.33 Total: 47.51 kcal Atomic # 6 Polarization: -50.68 SS G_CDS: 3.53 Total: -47.15 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -1.05 Total: -89.11 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.14 Total: -12.93 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -59.98 4.05 -55.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709319844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.187 kcal (2) G-P(sol) polarization free energy of solvation -59.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds