Wall clock time and date at job start Mon Mar 30 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47476 * 2 1 4 4 C 1.38125 * 120.03642 * 265.00099 * 3 2 1 5 5 C 1.38279 * 120.07035 * 180.23574 * 4 3 2 6 6 C 1.38325 * 120.13675 * 359.48383 * 5 4 3 7 7 C 1.38081 * 120.06773 * 0.50959 * 6 5 4 8 8 C 1.50704 * 120.03407 * 179.72205 * 7 6 5 9 9 C 1.52995 * 109.47146 * 265.02757 * 8 7 6 10 10 H 1.09004 * 109.47194 * 304.99814 * 9 8 7 11 11 N 1.46896 * 109.47623 * 64.99878 * 9 8 7 12 12 C 1.53000 * 109.47274 * 185.00151 * 9 8 7 13 13 C 1.53000 * 109.47419 * 174.99774 * 12 9 8 14 14 C 1.38856 * 120.03467 * 84.97513 * 3 2 1 15 15 O 1.35756 * 120.07187 * 0.04345 * 14 3 2 16 16 C 1.34828 * 116.99724 * 89.99675 * 15 14 3 17 17 H 1.07999 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.38656 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31554 * 120.00534 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99794 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47336 * 90.00143 * 20 18 16 22 22 H 1.48505 * 109.47132 * 210.00048 * 20 18 16 23 23 H 1.48506 * 109.46926 * 329.99788 * 20 18 16 24 24 H 1.09007 * 109.46791 * 59.99713 * 1 2 3 25 25 H 1.08997 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47212 * 300.00553 * 1 2 3 27 27 H 1.09002 * 109.46990 * 239.99456 * 2 1 3 28 28 H 1.09001 * 109.46370 * 120.00147 * 2 1 3 29 29 H 1.08002 * 119.96173 * 359.94933 * 4 3 2 30 30 H 1.07991 * 119.93082 * 179.72267 * 5 4 3 31 31 H 1.08000 * 119.96618 * 180.26074 * 6 5 4 32 32 H 1.08998 * 109.47190 * 25.02407 * 8 7 6 33 33 H 1.08997 * 109.47063 * 145.02622 * 8 7 6 34 34 H 1.00903 * 110.99603 * 60.00081 * 11 9 8 35 35 H 1.00896 * 111.00576 * 183.95157 * 11 9 8 36 36 H 1.09006 * 109.46967 * 295.00033 * 12 9 8 37 37 H 1.09009 * 109.47341 * 54.99688 * 12 9 8 38 38 H 1.08990 * 109.47143 * 299.99724 * 13 12 9 39 39 H 1.09000 * 109.46761 * 60.00264 * 13 12 9 40 40 H 1.09005 * 109.46867 * 179.97438 * 13 12 9 41 41 H 0.96996 * 120.00632 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3611 2.0378 -1.1912 5 6 2.8268 3.3398 -1.1916 6 6 2.9549 4.0319 -0.0008 7 6 2.6278 3.4206 1.1933 8 6 2.7735 4.1733 2.4908 9 6 4.1313 3.8506 3.1178 10 1 4.2333 2.7710 3.2279 11 7 5.2038 4.3580 2.2517 12 6 4.2289 4.5148 4.4927 13 6 5.5326 4.0913 5.1723 14 6 2.1648 2.1111 1.1975 15 8 1.8429 1.5073 2.3700 16 6 2.8263 0.8367 3.0033 17 1 3.8168 0.7984 2.5745 18 6 2.5661 0.1963 4.2053 19 7 3.5257 -0.4575 4.8236 20 14 0.8528 0.2620 4.9467 21 1 0.0531 -0.8855 4.4478 22 1 0.9508 0.1906 6.4268 23 1 0.1924 1.5332 4.5551 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 2.2587 1.5012 -2.1229 30 1 3.0874 3.8186 -2.1238 31 1 3.3149 5.0502 -0.0047 32 1 2.7073 5.2442 2.2990 33 1 1.9780 3.8767 3.1742 34 1 5.1311 5.3575 2.1340 35 1 6.1109 4.1012 2.6111 36 1 4.2161 5.5984 4.3744 37 1 3.3824 4.2063 5.1063 38 1 5.5454 3.0079 5.2906 39 1 6.3790 4.3999 4.5588 40 1 5.6023 4.5649 6.1516 41 1 3.3436 -0.9058 5.6642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709319850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:58 Heat of formation + Delta-G solvation = -28.858430 kcal Electronic energy + Delta-G solvation = -20950.074569 eV Core-core repulsion = 18022.575545 eV Total energy + Delta-G solvation = -2927.499024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.46858 -36.65840 -36.24672 -33.53591 -32.03924 -31.05311 -30.02300 -28.38931 -27.19407 -24.70916 -23.45801 -22.98040 -20.83911 -19.97175 -19.60209 -17.73573 -16.61107 -15.83824 -15.23516 -14.91293 -14.42047 -14.25380 -13.93758 -13.47487 -13.18529 -13.06576 -12.97163 -12.55008 -12.22386 -12.09963 -11.85134 -11.65001 -11.49653 -11.30484 -11.14972 -10.87955 -10.69119 -10.59703 -10.48693 -10.30653 -10.21225 -10.10028 -9.62060 -9.41915 -8.30761 -8.18177 -7.86586 -7.55108 -6.07549 -3.76911 2.08850 2.12285 3.35299 3.40166 3.55031 4.37655 4.48159 5.04593 5.24295 5.27138 5.40121 5.44441 5.49044 5.50942 5.54076 5.65434 5.78680 5.91679 6.01359 6.05034 6.07519 6.10410 6.17594 6.26732 6.29592 6.41165 6.46447 6.52405 6.59750 6.66871 6.70366 6.83042 6.96492 7.03754 7.15150 7.25151 7.49972 7.60159 7.68273 7.93083 8.01042 8.35014 9.30157 9.99570 11.03703 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.011466 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.662067 B = 2441.423303 C = 4141.149805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 C -0.109 4.109 4 C -0.119 4.119 5 C -0.148 4.148 6 C -0.096 4.096 7 C -0.089 4.089 8 C -0.058 4.058 9 C 0.087 3.913 10 H 0.116 0.884 11 N -0.836 5.836 12 C -0.153 4.153 13 C -0.151 4.151 14 C 0.147 3.853 15 O -0.275 6.275 16 C -0.346 4.346 17 H 0.084 0.916 18 C 0.053 3.947 19 N -0.904 5.904 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.263 1.263 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.325 0.675 35 H 0.335 0.665 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 8.392 -5.979 10.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.110 4.110 4 C -0.137 4.137 5 C -0.166 4.166 6 C -0.114 4.114 7 C -0.090 4.090 8 C -0.096 4.096 9 C -0.024 4.024 10 H 0.133 0.867 11 N -0.365 5.365 12 C -0.192 4.192 13 C -0.209 4.209 14 C 0.102 3.898 15 O -0.188 6.188 16 C -0.422 4.422 17 H 0.102 0.898 18 C -0.145 4.145 19 N -0.548 5.548 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.188 1.188 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.911 7.820 -6.304 10.085 hybrid contribution -0.228 0.553 1.209 1.349 sum -1.139 8.372 -5.094 9.866 Atomic orbital electron populations 1.21663 0.95623 1.00784 1.01522 1.20370 0.95479 0.92987 1.02769 1.20259 1.01328 0.96477 0.92942 1.20739 1.01210 0.95110 0.96650 1.20846 1.03196 0.95136 0.97430 1.20643 0.99873 0.99240 0.91632 1.20063 0.98986 0.95022 0.94912 1.20370 0.97455 0.97312 0.94460 1.21711 0.90176 1.02513 0.87984 0.86672 1.58946 1.05933 1.17268 1.54325 1.22284 0.98704 0.99209 0.99039 1.21761 0.96974 1.02709 0.99432 1.18487 0.94359 0.90400 0.86570 1.83452 1.36486 1.67811 1.31071 1.20283 0.90007 1.28273 1.03647 0.89806 1.24216 0.97961 0.96515 0.95773 1.69647 1.31874 1.35547 1.17778 0.86366 0.84746 0.79370 0.77497 1.20571 1.21702 1.18784 0.93676 0.93223 0.92238 0.92565 0.89300 0.87201 0.87314 0.87165 0.92882 0.90380 0.86392 0.85232 0.93331 0.91460 0.91495 0.93569 0.93430 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 37.16 0.37 -2.00 16 2 C -0.08 -1.50 5.79 -27.89 -0.16 -1.66 16 3 C -0.11 -2.20 5.15 -104.44 -0.54 -2.74 16 4 C -0.12 -2.07 9.68 -39.61 -0.38 -2.46 16 5 C -0.15 -2.43 10.04 -39.53 -0.40 -2.83 16 6 C -0.10 -1.65 9.54 -39.61 -0.38 -2.03 16 7 C -0.09 -1.76 4.90 -104.43 -0.51 -2.27 16 8 C -0.06 -1.06 4.70 -27.88 -0.13 -1.20 16 9 C 0.09 1.56 2.79 -67.72 -0.19 1.37 16 10 H 0.12 2.60 5.63 -51.93 -0.29 2.31 16 11 N -0.84 -12.85 8.78 -4.67 -0.04 -12.89 16 12 C -0.15 -2.43 5.58 -26.73 -0.15 -2.58 16 13 C -0.15 -2.28 9.68 37.16 0.36 -1.92 16 14 C 0.15 3.24 5.54 -39.11 -0.22 3.03 16 15 O -0.27 -6.86 6.98 0.04 0.00 -6.86 16 16 C -0.35 -9.36 7.59 30.89 0.23 -9.13 16 17 H 0.08 2.48 7.58 -52.49 -0.40 2.08 16 18 C 0.05 1.48 5.49 -17.52 -0.10 1.39 16 19 N -0.90 -26.28 13.96 55.48 0.77 -25.51 16 20 Si 0.89 22.08 28.62 -169.99 -4.86 17.21 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.26 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 28 H 0.09 1.96 7.01 -51.93 -0.36 1.59 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 34 H 0.32 4.25 9.00 -39.29 -0.35 3.90 16 35 H 0.33 4.85 7.55 -39.29 -0.30 4.55 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.61 6.87 -51.93 -0.36 0.25 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -28.71 332.93 -7.96 -36.67 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.66 Total: 11.36 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -2.19 Total: -25.01 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.73 Total: -38.40 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.00 Total: -6.86 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.71 -7.96 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709319850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.816 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds