Wall clock time and date at job start Mon Mar 30 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47476 * 2 1 4 4 C 1.38125 * 120.03642 * 265.00099 * 3 2 1 5 5 C 1.38279 * 120.07035 * 180.23574 * 4 3 2 6 6 C 1.38325 * 120.13675 * 359.48383 * 5 4 3 7 7 C 1.38081 * 120.06773 * 0.50959 * 6 5 4 8 8 C 1.50704 * 120.03407 * 179.72205 * 7 6 5 9 9 C 1.52995 * 109.47146 * 265.02757 * 8 7 6 10 10 H 1.09004 * 109.47194 * 304.99814 * 9 8 7 11 11 N 1.46896 * 109.47623 * 64.99878 * 9 8 7 12 12 C 1.53000 * 109.47274 * 185.00151 * 9 8 7 13 13 C 1.53000 * 109.47419 * 174.99774 * 12 9 8 14 14 C 1.38856 * 120.03467 * 84.97513 * 3 2 1 15 15 O 1.35756 * 120.07187 * 0.04345 * 14 3 2 16 16 C 1.34828 * 116.99724 * 89.99675 * 15 14 3 17 17 H 1.07999 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.38656 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31554 * 120.00534 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99794 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47336 * 90.00143 * 20 18 16 22 22 H 1.48505 * 109.47132 * 210.00048 * 20 18 16 23 23 H 1.48506 * 109.46926 * 329.99788 * 20 18 16 24 24 H 1.09007 * 109.46791 * 59.99713 * 1 2 3 25 25 H 1.08997 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47212 * 300.00553 * 1 2 3 27 27 H 1.09002 * 109.46990 * 239.99456 * 2 1 3 28 28 H 1.09001 * 109.46370 * 120.00147 * 2 1 3 29 29 H 1.08002 * 119.96173 * 359.94933 * 4 3 2 30 30 H 1.07991 * 119.93082 * 179.72267 * 5 4 3 31 31 H 1.08000 * 119.96618 * 180.26074 * 6 5 4 32 32 H 1.08998 * 109.47190 * 25.02407 * 8 7 6 33 33 H 1.08997 * 109.47063 * 145.02622 * 8 7 6 34 34 H 1.00903 * 110.99603 * 60.00081 * 11 9 8 35 35 H 1.00896 * 111.00576 * 183.95157 * 11 9 8 36 36 H 1.09006 * 109.46967 * 295.00033 * 12 9 8 37 37 H 1.09009 * 109.47341 * 54.99688 * 12 9 8 38 38 H 1.08990 * 109.47143 * 299.99724 * 13 12 9 39 39 H 1.09000 * 109.46761 * 60.00264 * 13 12 9 40 40 H 1.09005 * 109.46867 * 179.97438 * 13 12 9 41 41 H 0.96996 * 120.00632 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3611 2.0378 -1.1912 5 6 2.8268 3.3398 -1.1916 6 6 2.9549 4.0319 -0.0008 7 6 2.6278 3.4206 1.1933 8 6 2.7735 4.1733 2.4908 9 6 4.1313 3.8506 3.1178 10 1 4.2333 2.7710 3.2279 11 7 5.2038 4.3580 2.2517 12 6 4.2289 4.5148 4.4927 13 6 5.5326 4.0913 5.1723 14 6 2.1648 2.1111 1.1975 15 8 1.8429 1.5073 2.3700 16 6 2.8263 0.8367 3.0033 17 1 3.8168 0.7984 2.5745 18 6 2.5661 0.1963 4.2053 19 7 3.5257 -0.4575 4.8236 20 14 0.8528 0.2620 4.9467 21 1 0.0531 -0.8855 4.4478 22 1 0.9508 0.1906 6.4268 23 1 0.1924 1.5332 4.5551 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 2.2587 1.5012 -2.1229 30 1 3.0874 3.8186 -2.1238 31 1 3.3149 5.0502 -0.0047 32 1 2.7073 5.2442 2.2990 33 1 1.9780 3.8767 3.1742 34 1 5.1311 5.3575 2.1340 35 1 6.1109 4.1012 2.6111 36 1 4.2161 5.5984 4.3744 37 1 3.3824 4.2063 5.1063 38 1 5.5454 3.0079 5.2906 39 1 6.3790 4.3999 4.5588 40 1 5.6023 4.5649 6.1516 41 1 3.3436 -0.9058 5.6642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709319850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:58 Heat of formation + Delta-G solvation = -45.925006 kcal Electronic energy + Delta-G solvation = -20950.814631 eV Core-core repulsion = 18022.575545 eV Total energy + Delta-G solvation = -2928.239086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03118 -38.11767 -37.90759 -34.97275 -34.13933 -32.46888 -31.34380 -29.89116 -28.63097 -26.68794 -24.81709 -24.49191 -22.30543 -21.40929 -21.09078 -19.77837 -18.39751 -17.28214 -16.67320 -16.47347 -16.07942 -15.66012 -15.32901 -15.07145 -14.80337 -14.59647 -14.33274 -14.10220 -14.02229 -13.70668 -13.48053 -13.20432 -12.99421 -12.74062 -12.59908 -12.40653 -12.27250 -12.17845 -12.04301 -11.84517 -11.78874 -11.59915 -11.38382 -11.20063 -10.39948 -9.46893 -9.28414 -9.08756 -8.23912 -5.92191 0.61846 0.66424 1.33952 1.35472 1.53706 2.40522 2.90954 3.09400 3.72208 3.78251 3.94882 4.00775 4.11556 4.18260 4.22619 4.33670 4.40803 4.53947 4.58782 4.68457 4.76952 4.77433 4.79773 4.87430 4.91711 5.03819 5.09492 5.14194 5.16982 5.23922 5.31659 5.38555 5.48785 5.55254 5.70078 5.74909 5.80034 6.01645 6.11793 6.37659 6.41512 6.80149 7.14587 8.00906 8.91322 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.011466 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.662067 B = 2441.423303 C = 4141.149805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.134 4.134 6 C -0.096 4.096 7 C -0.099 4.099 8 C -0.056 4.056 9 C 0.097 3.903 10 H 0.059 0.941 11 N -0.834 5.834 12 C -0.148 4.148 13 C -0.146 4.146 14 C 0.091 3.909 15 O -0.285 6.285 16 C -0.314 4.314 17 H 0.044 0.956 18 C 0.001 3.999 19 N -0.945 5.945 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.344 0.656 35 H 0.340 0.660 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.028 0.972 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 10.737 -8.231 13.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.152 4.152 6 C -0.114 4.114 7 C -0.100 4.100 8 C -0.094 4.094 9 C -0.015 4.015 10 H 0.078 0.922 11 N -0.365 5.365 12 C -0.188 4.188 13 C -0.204 4.204 14 C 0.047 3.953 15 O -0.199 6.199 16 C -0.391 4.391 17 H 0.062 0.938 18 C -0.192 4.192 19 N -0.592 5.592 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.190 1.190 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.159 0.841 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.229 10.184 -8.576 13.371 hybrid contribution -0.043 -0.089 1.713 1.716 sum -1.272 10.095 -6.863 12.273 Atomic orbital electron populations 1.21606 0.94125 1.01822 1.01323 1.20356 0.96841 0.92621 1.01794 1.20488 1.01739 0.96953 0.93436 1.21095 1.00261 0.95871 0.96612 1.21355 1.00576 0.94509 0.98742 1.20987 0.99003 1.00538 0.90848 1.20271 0.98861 0.94311 0.96555 1.20347 0.96534 0.98971 0.93497 1.21334 0.90975 0.99542 0.89646 0.92229 1.58804 1.05402 1.18651 1.53635 1.22235 0.98218 1.00867 0.97466 1.21711 0.97424 1.00317 1.00926 1.18973 0.98312 0.91919 0.86069 1.83434 1.35868 1.67927 1.32705 1.19937 0.88882 1.27154 1.03154 0.93828 1.24832 1.01127 0.96869 0.96394 1.69749 1.33625 1.37312 1.18504 0.85491 0.80803 0.79102 0.77078 1.20122 1.20778 1.19045 0.91261 0.91601 0.94899 0.90004 0.93677 0.84093 0.83210 0.84190 0.89611 0.93351 0.84279 0.84634 0.90069 0.93665 0.95277 0.91445 0.91559 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.89 71.98 0.71 -3.69 16 2 C -0.08 -3.00 5.79 29.85 0.17 -2.83 16 3 C -0.13 -5.00 5.15 -19.75 -0.10 -5.11 16 4 C -0.12 -3.84 9.68 22.25 0.22 -3.62 16 5 C -0.13 -3.84 10.04 22.30 0.22 -3.61 16 6 C -0.10 -3.00 9.54 22.25 0.21 -2.79 16 7 C -0.10 -3.86 4.90 -19.74 -0.10 -3.96 16 8 C -0.06 -2.03 4.70 29.85 0.14 -1.89 16 9 C 0.10 3.50 2.79 44.91 0.13 3.62 16 10 H 0.06 2.87 5.63 -2.39 -0.01 2.86 16 11 N -0.83 -24.38 8.78 -168.69 -1.48 -25.86 16 12 C -0.15 -4.67 5.58 30.59 0.17 -4.50 16 13 C -0.15 -4.39 9.68 71.98 0.70 -3.70 16 14 C 0.09 4.12 5.54 22.58 0.13 4.25 16 15 O -0.29 -15.01 6.98 -22.78 -0.16 -15.17 16 16 C -0.31 -18.16 7.59 67.92 0.52 -17.64 16 17 H 0.04 2.82 7.58 -2.91 -0.02 2.80 16 18 C 0.00 0.08 5.49 84.83 0.47 0.55 16 19 N -0.94 -57.95 13.96 21.61 0.30 -57.65 16 20 Si 0.95 47.47 28.62 68.60 1.96 49.43 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 24 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 2.62 8.05 -2.39 -0.02 2.60 16 28 H 0.04 2.09 7.01 -2.39 -0.02 2.07 16 29 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.15 3.11 8.06 -2.92 -0.02 3.09 16 31 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.09 2.49 8.05 -2.39 -0.02 2.47 16 33 H 0.05 2.02 7.70 -2.39 -0.02 2.00 16 34 H 0.34 7.87 9.00 -89.69 -0.81 7.06 16 35 H 0.34 9.46 7.55 -89.70 -0.68 8.78 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.70 6.87 -2.39 -0.02 1.69 16 40 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -67.23 332.93 3.74 -63.49 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.47 Total: 30.68 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 3.58 Total: -44.91 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.18 Total: -83.51 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.16 Total: -15.17 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.96 Total: 49.43 kcal Total: -67.23 3.74 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709319850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.563 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds