Wall clock time and date at job start Mon Mar 30 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38290 * 119.96925 * 2 1 4 4 C 1.38247 * 120.10884 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.05576 * 359.96837 * 4 3 2 6 6 C 1.50694 * 120.02808 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46884 * 145.00070 * 6 5 4 8 8 C 1.52994 * 109.47731 * 265.00784 * 6 5 4 9 9 N 1.46906 * 109.47116 * 25.00814 * 6 5 4 10 10 C 1.38706 * 119.94440 * 0.28390 * 5 4 3 11 11 O 1.35899 * 120.06043 * 179.72158 * 10 5 4 12 12 C 1.42894 * 117.00500 * 174.33475 * 11 10 5 13 13 H 1.08997 * 109.46939 * 324.80965 * 12 11 10 14 14 C 1.53007 * 109.47295 * 84.81172 * 12 11 10 15 15 C 1.52999 * 109.47158 * 204.81318 * 12 11 10 16 16 C 1.50693 * 109.47294 * 64.99766 * 15 12 11 17 17 H 1.07997 * 120.00323 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99945 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00158 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46816 * 60.00178 * 20 18 16 22 22 H 1.48501 * 109.47201 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47582 * 300.00410 * 20 18 16 24 24 C 1.38124 * 119.97226 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46821 * 90.00372 * 1 2 3 26 26 H 1.08999 * 109.46945 * 210.00490 * 1 2 3 27 27 H 1.08999 * 109.47177 * 330.00085 * 1 2 3 28 28 H 1.08000 * 119.94589 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.97242 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47851 * 180.02562 * 8 6 5 31 31 H 1.09011 * 109.47091 * 299.99786 * 8 6 5 32 32 H 1.08992 * 109.47331 * 59.99595 * 8 6 5 33 33 H 1.00897 * 111.00022 * 179.97438 * 9 6 5 34 34 H 1.00902 * 110.99929 * 303.95357 * 9 6 5 35 35 H 1.09001 * 109.47019 * 180.02562 * 14 12 11 36 36 H 1.08999 * 109.46524 * 300.00094 * 14 12 11 37 37 H 1.09000 * 109.46596 * 60.00151 * 14 12 11 38 38 H 1.08998 * 109.47117 * 185.00359 * 15 12 11 39 39 H 1.09005 * 109.47212 * 304.99690 * 15 12 11 40 40 H 0.96996 * 120.00005 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.02751 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2753 0.0071 -0.0004 6 6 5.7822 0.0115 -0.0016 7 1 6.1484 -0.8289 0.5881 8 6 6.2916 -0.1133 -1.4388 9 7 6.2687 1.2685 0.5829 10 6 3.5847 -1.1958 -0.0057 11 8 4.2658 -2.3717 -0.0113 12 6 3.4947 -3.5687 0.1091 13 1 2.6461 -3.3893 0.7692 14 6 2.9871 -3.9895 -1.2716 15 6 4.3681 -4.6814 0.6923 16 6 4.7673 -4.3210 2.1000 17 1 4.4314 -3.3915 2.5354 18 6 5.5606 -5.1785 2.8325 19 7 5.9692 -6.3106 2.3026 20 14 6.0560 -4.7314 4.5773 21 1 4.8382 -4.5686 5.4113 22 1 6.9036 -5.8114 5.1433 23 1 6.8206 -3.4584 4.5640 24 6 2.1971 -1.1965 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6565 2.1325 0.0004 29 1 4.1176 2.1382 -0.0010 30 1 7.3816 -0.1106 -1.4396 31 1 5.9307 -1.0460 -1.8725 32 1 5.9254 0.7271 -2.0284 33 1 7.2772 1.2957 0.5938 34 1 5.8904 2.0653 0.0929 35 1 2.3985 -4.9024 -1.1796 36 1 2.3649 -3.1968 -1.6869 37 1 3.8358 -4.1689 -1.9315 38 1 3.8074 -5.6161 0.7016 39 1 5.2621 -4.8002 0.0802 40 1 6.5269 -6.9139 2.8181 41 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709959952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:40 Heat of formation + Delta-G solvation = -34.347625 kcal Electronic energy + Delta-G solvation = -20366.106908 eV Core-core repulsion = 17438.369855 eV Total energy + Delta-G solvation = -2927.737053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05120 -37.54115 -35.91577 -33.49019 -31.92790 -31.20346 -29.56623 -28.54948 -27.44736 -26.54034 -23.48714 -22.73786 -22.03863 -20.29091 -19.68892 -17.33783 -16.36378 -16.32508 -15.54593 -14.75762 -14.60158 -14.33120 -14.18998 -13.72848 -13.45075 -13.27345 -13.23788 -12.90744 -12.55374 -12.19911 -12.02591 -11.92963 -11.73407 -11.46849 -11.41449 -11.33712 -10.96042 -10.74982 -10.65122 -10.51050 -10.30233 -9.93520 -9.36050 -9.10485 -8.65858 -8.36976 -8.33753 -7.56105 -6.00233 -4.01419 1.61622 1.84034 3.36823 3.40034 3.45058 3.94066 4.06226 4.48307 4.71396 4.93075 5.07659 5.15970 5.36057 5.39083 5.46902 5.50749 5.60378 5.62949 5.65818 5.75296 5.85235 5.86911 5.89942 5.93349 6.05310 6.18580 6.25842 6.27675 6.43389 6.58239 6.63983 6.75581 6.83453 6.89258 7.14913 7.32535 7.51664 7.56578 7.60801 7.96573 8.18961 8.38336 9.02335 9.62142 11.11103 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.006463 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.221353 B = 4331.272361 C = 4913.312370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.174 4.174 4 C -0.070 4.070 5 C -0.120 4.120 6 C 0.135 3.865 7 H 0.102 0.898 8 C -0.176 4.176 9 N -0.842 5.842 10 C 0.158 3.842 11 O -0.287 6.287 12 C 0.087 3.913 13 H 0.062 0.938 14 C -0.177 4.177 15 C 0.027 3.973 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.214 4.214 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.341 0.659 34 H 0.332 0.668 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.261 0.739 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 13.435 -7.784 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.192 4.192 4 C -0.088 4.088 5 C -0.121 4.121 6 C 0.024 3.976 7 H 0.120 0.880 8 C -0.235 4.235 9 N -0.371 5.371 10 C 0.110 3.890 11 O -0.200 6.200 12 C 0.031 3.969 13 H 0.080 0.920 14 C -0.234 4.234 15 C -0.010 4.010 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.233 4.233 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.071 12.971 -7.089 15.980 hybrid contribution 0.513 0.221 0.047 0.560 sum -5.558 13.192 -7.043 15.954 Atomic orbital electron populations 1.20774 0.91637 1.02560 1.01945 1.19627 0.95544 0.92690 0.97588 1.20727 0.93997 0.97015 1.07490 1.20595 0.93618 0.96677 0.97906 1.19012 0.94925 0.90722 1.07486 1.20117 0.90645 0.93294 0.93591 0.88029 1.22527 1.00563 1.02553 0.97857 1.58988 1.13553 1.03787 1.60819 1.18940 0.90287 0.86847 0.92907 1.86257 1.36160 1.11870 1.85692 1.22854 0.95317 0.83961 0.94771 0.92046 1.22412 1.01374 1.01220 0.98438 1.19249 0.94948 0.90796 0.95995 1.21086 1.31172 1.04770 0.98126 0.92621 1.24960 0.95990 0.94985 0.98298 1.69937 1.36095 1.10353 1.37313 0.86663 0.78634 0.78095 0.84722 1.20260 1.21309 1.20069 1.21184 0.93282 0.98717 1.10113 0.91438 0.91644 0.91738 0.86722 0.86059 0.92746 0.91417 0.93338 0.84673 0.85415 0.91463 0.93326 0.92001 0.94478 0.95365 0.92923 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.05 -0.79 5.88 -104.64 -0.62 -1.40 16 3 C -0.17 -2.40 9.70 -39.56 -0.38 -2.78 16 4 C -0.07 -1.01 9.26 -39.60 -0.37 -1.37 16 5 C -0.12 -2.02 5.07 -104.48 -0.53 -2.55 16 6 C 0.13 2.12 3.32 -68.87 -0.23 1.89 16 7 H 0.10 1.95 7.70 -51.93 -0.40 1.55 16 8 C -0.18 -2.42 9.46 37.15 0.35 -2.06 16 9 N -0.84 -11.03 8.93 -5.65 -0.05 -11.08 16 10 C 0.16 2.95 6.57 -39.22 -0.26 2.69 16 11 O -0.29 -6.07 8.70 -19.42 -0.17 -6.24 16 12 C 0.09 1.80 2.17 -26.73 -0.06 1.74 16 13 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 14 C -0.18 -3.02 9.17 37.16 0.34 -2.68 16 15 C 0.03 0.69 4.68 -27.89 -0.13 0.56 16 16 C -0.51 -14.60 8.88 -34.44 -0.31 -14.91 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C -0.21 -3.59 7.89 -39.43 -0.31 -3.91 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.45 6.19 -52.49 -0.32 1.13 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.34 3.86 9.04 -39.29 -0.36 3.50 16 34 H 0.33 3.64 7.01 -39.29 -0.28 3.36 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.74 6.90 -51.93 -0.36 0.38 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 41 H 0.13 2.09 5.43 -52.49 -0.28 1.80 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -30.82 333.29 -8.23 -39.05 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.51 Total: 6.28 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -2.23 Total: -24.07 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.69 Total: -37.19 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.17 Total: -6.24 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.82 -8.23 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709959952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.701 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds