Wall clock time and date at job start Mon Mar 30 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38290 * 119.96925 * 2 1 4 4 C 1.38247 * 120.10884 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.05576 * 359.96837 * 4 3 2 6 6 C 1.50694 * 120.02808 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.46884 * 145.00070 * 6 5 4 8 8 C 1.52994 * 109.47731 * 265.00784 * 6 5 4 9 9 N 1.46906 * 109.47116 * 25.00814 * 6 5 4 10 10 C 1.38706 * 119.94440 * 0.28390 * 5 4 3 11 11 O 1.35899 * 120.06043 * 179.72158 * 10 5 4 12 12 C 1.42894 * 117.00500 * 174.33475 * 11 10 5 13 13 H 1.08997 * 109.46939 * 324.80965 * 12 11 10 14 14 C 1.53007 * 109.47295 * 84.81172 * 12 11 10 15 15 C 1.52999 * 109.47158 * 204.81318 * 12 11 10 16 16 C 1.50693 * 109.47294 * 64.99766 * 15 12 11 17 17 H 1.07997 * 120.00323 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99945 * 179.97438 * 16 15 12 19 19 N 1.31510 * 120.00158 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99889 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46816 * 60.00178 * 20 18 16 22 22 H 1.48501 * 109.47201 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47582 * 300.00410 * 20 18 16 24 24 C 1.38124 * 119.97226 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46821 * 90.00372 * 1 2 3 26 26 H 1.08999 * 109.46945 * 210.00490 * 1 2 3 27 27 H 1.08999 * 109.47177 * 330.00085 * 1 2 3 28 28 H 1.08000 * 119.94589 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.97242 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47851 * 180.02562 * 8 6 5 31 31 H 1.09011 * 109.47091 * 299.99786 * 8 6 5 32 32 H 1.08992 * 109.47331 * 59.99595 * 8 6 5 33 33 H 1.00897 * 111.00022 * 179.97438 * 9 6 5 34 34 H 1.00902 * 110.99929 * 303.95357 * 9 6 5 35 35 H 1.09001 * 109.47019 * 180.02562 * 14 12 11 36 36 H 1.08999 * 109.46524 * 300.00094 * 14 12 11 37 37 H 1.09000 * 109.46596 * 60.00151 * 14 12 11 38 38 H 1.08998 * 109.47117 * 185.00359 * 15 12 11 39 39 H 1.09005 * 109.47212 * 304.99690 * 15 12 11 40 40 H 0.96996 * 120.00005 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.02751 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.2753 0.0071 -0.0004 6 6 5.7822 0.0115 -0.0016 7 1 6.1484 -0.8289 0.5881 8 6 6.2916 -0.1133 -1.4388 9 7 6.2687 1.2685 0.5829 10 6 3.5847 -1.1958 -0.0057 11 8 4.2658 -2.3717 -0.0113 12 6 3.4947 -3.5687 0.1091 13 1 2.6461 -3.3893 0.7692 14 6 2.9871 -3.9895 -1.2716 15 6 4.3681 -4.6814 0.6923 16 6 4.7673 -4.3210 2.1000 17 1 4.4314 -3.3915 2.5354 18 6 5.5606 -5.1785 2.8325 19 7 5.9692 -6.3106 2.3026 20 14 6.0560 -4.7314 4.5773 21 1 4.8382 -4.5686 5.4113 22 1 6.9036 -5.8114 5.1433 23 1 6.8206 -3.4584 4.5640 24 6 2.1971 -1.1965 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6565 2.1325 0.0004 29 1 4.1176 2.1382 -0.0010 30 1 7.3816 -0.1106 -1.4396 31 1 5.9307 -1.0460 -1.8725 32 1 5.9254 0.7271 -2.0284 33 1 7.2772 1.2957 0.5938 34 1 5.8904 2.0653 0.0929 35 1 2.3985 -4.9024 -1.1796 36 1 2.3649 -3.1968 -1.6869 37 1 3.8358 -4.1689 -1.9315 38 1 3.8074 -5.6161 0.7016 39 1 5.2621 -4.8002 0.0802 40 1 6.5269 -6.9139 2.8181 41 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709959952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:39 Heat of formation + Delta-G solvation = -53.302600 kcal Electronic energy + Delta-G solvation = -20366.928857 eV Core-core repulsion = 17438.369855 eV Total energy + Delta-G solvation = -2928.559002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36378 -38.94083 -37.05313 -35.48053 -33.57181 -32.49040 -30.81699 -29.70640 -29.32898 -27.59704 -25.36573 -24.05069 -23.36878 -21.69149 -21.09248 -18.69868 -18.52440 -17.64546 -16.79872 -16.56544 -16.06875 -15.74132 -15.39213 -14.97334 -14.66637 -14.58620 -14.35978 -14.20221 -13.97480 -13.73793 -13.48671 -13.42206 -13.18319 -13.04137 -12.69173 -12.66448 -12.56019 -12.47082 -12.27702 -11.86169 -11.72314 -11.60544 -11.25683 -11.04860 -10.60396 -9.74462 -9.51212 -8.84775 -8.23122 -6.31755 0.43840 0.61740 1.35450 1.38449 1.46471 2.38132 2.50089 2.85694 3.11407 3.61005 3.82245 3.97788 4.01250 4.09174 4.20450 4.30038 4.34197 4.38057 4.42595 4.52911 4.72043 4.77041 4.77830 4.86458 4.90542 4.94107 4.99657 5.09331 5.15174 5.16467 5.32391 5.37850 5.45551 5.52628 5.64197 5.72959 5.74325 6.05334 6.17779 6.25539 6.64423 6.74526 6.80329 7.35583 8.88354 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.006463 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.221353 B = 4331.272361 C = 4913.312370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.058 4.058 3 C -0.167 4.167 4 C -0.068 4.068 5 C -0.138 4.138 6 C 0.139 3.861 7 H 0.055 0.945 8 C -0.166 4.166 9 N -0.842 5.842 10 C 0.121 3.879 11 O -0.314 6.314 12 C 0.095 3.905 13 H 0.059 0.941 14 C -0.165 4.165 15 C 0.031 3.969 16 C -0.530 4.530 17 H 0.046 0.954 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.275 1.275 24 C -0.227 4.227 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.351 0.649 34 H 0.348 0.652 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.024 0.976 39 H -0.002 1.002 40 H 0.265 0.735 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 16.118 -7.709 19.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.058 4.058 3 C -0.185 4.185 4 C -0.086 4.086 5 C -0.139 4.139 6 C 0.027 3.973 7 H 0.073 0.927 8 C -0.226 4.226 9 N -0.374 5.374 10 C 0.074 3.926 11 O -0.228 6.228 12 C 0.040 3.960 13 H 0.077 0.923 14 C -0.222 4.222 15 C -0.006 4.006 16 C -0.568 4.568 17 H 0.065 0.935 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.780 3.220 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.200 1.200 24 C -0.246 4.246 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.168 0.832 29 H 0.167 0.833 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.367 15.673 -7.023 18.688 hybrid contribution 0.886 -0.513 0.011 1.024 sum -6.481 15.161 -7.011 17.917 Atomic orbital electron populations 1.20840 0.89035 1.03535 1.03304 1.20063 0.97492 0.92038 0.96187 1.21190 0.93882 0.98156 1.05270 1.20948 0.94296 0.96657 0.96747 1.19287 0.95468 0.91081 1.08069 1.19859 0.90513 0.92943 0.93940 0.92707 1.22430 1.01244 1.02142 0.96741 1.58885 1.14499 1.03189 1.60854 1.19308 0.91408 0.86333 0.95535 1.86176 1.37114 1.12693 1.86804 1.22523 0.93809 0.83115 0.96589 0.92271 1.22290 1.01502 1.02411 0.96025 1.19083 0.94397 0.92339 0.94745 1.21380 1.31439 1.04413 0.99594 0.93549 1.25797 0.95911 0.94872 1.02505 1.70044 1.36672 1.11256 1.38946 0.85653 0.78625 0.77910 0.79825 1.19192 1.20155 1.20015 1.21315 0.92626 0.99884 1.10793 0.89756 0.91777 0.89714 0.83212 0.83316 0.91576 0.93782 0.91198 0.83538 0.83647 0.90148 0.91249 0.92507 0.95772 0.98318 0.92632 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 10.01 71.24 0.71 -1.37 16 2 C -0.06 -1.53 5.88 -19.88 -0.12 -1.65 16 3 C -0.17 -4.01 9.70 22.28 0.22 -3.79 16 4 C -0.07 -1.80 9.26 22.26 0.21 -1.59 16 5 C -0.14 -4.60 5.07 -19.77 -0.10 -4.70 16 6 C 0.14 4.44 3.32 44.16 0.15 4.59 16 7 H 0.05 2.25 7.70 -2.38 -0.02 2.23 16 8 C -0.17 -4.56 9.46 71.98 0.68 -3.87 16 9 N -0.84 -20.97 8.93 -171.80 -1.53 -22.51 16 10 C 0.12 4.59 6.57 22.51 0.15 4.74 16 11 O -0.31 -13.99 8.70 -92.42 -0.80 -14.79 16 12 C 0.10 4.14 2.17 30.60 0.07 4.21 16 13 H 0.06 2.55 6.32 -2.39 -0.02 2.53 16 14 C -0.17 -5.71 9.17 71.98 0.66 -5.05 16 15 C 0.03 1.69 4.68 29.85 0.14 1.83 16 16 C -0.53 -31.40 8.88 25.60 0.23 -31.17 16 17 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 18 C 0.01 0.43 5.46 84.66 0.46 0.89 16 19 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 20 Si 0.96 46.23 29.54 68.60 2.03 48.25 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 24 C -0.23 -7.53 7.89 22.37 0.18 -7.35 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 27 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.15 2.99 6.19 -2.91 -0.02 2.98 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.35 7.51 9.04 -89.70 -0.81 6.70 16 34 H 0.35 6.69 7.01 -89.69 -0.63 6.06 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.10 6.90 -2.39 -0.02 2.08 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.13 4.10 5.43 -2.91 -0.02 4.09 16 Total: -1.00 -69.16 333.29 3.19 -65.97 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.41 Total: 24.17 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.63 Total: -44.31 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.25 Total: -79.30 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.80 Total: -14.79 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -69.16 3.19 -65.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709959952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.669 kcal (2) G-P(sol) polarization free energy of solvation -69.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds