Wall clock time and date at job start Mon Mar 30 2020 06:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38287 * 119.94465 * 2 1 4 4 C 1.38118 * 120.05876 * 179.97438 * 3 2 1 5 5 C 1.38756 * 119.94136 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05557 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99832 * 5.47908 * 6 5 4 8 8 H 1.09001 * 109.47381 * 35.03454 * 7 6 5 9 9 C 1.53002 * 109.47092 * 275.03354 * 7 6 5 10 10 C 1.52999 * 109.46909 * 155.03409 * 7 6 5 11 11 C 1.50695 * 109.47151 * 294.99911 * 10 7 6 12 12 H 1.08002 * 120.00328 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99948 * 179.97438 * 11 10 7 14 14 N 1.31510 * 120.00190 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00063 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47060 * 60.00236 * 15 13 11 17 17 H 1.48497 * 109.47090 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46982 * 300.00290 * 15 13 11 19 19 C 1.38705 * 119.89027 * 359.97438 * 5 4 3 20 20 C 1.50706 * 120.03106 * 179.97438 * 19 5 4 21 21 H 1.08996 * 109.46879 * 39.99746 * 20 19 5 22 22 C 1.52999 * 109.46796 * 280.00202 * 20 19 5 23 23 N 1.46899 * 109.46988 * 159.99994 * 20 19 5 24 24 C 1.38173 * 119.94510 * 0.25550 * 19 5 4 25 25 H 1.09006 * 109.46609 * 89.99943 * 1 2 3 26 26 H 1.09001 * 109.46962 * 209.99916 * 1 2 3 27 27 H 1.09002 * 109.47004 * 329.99902 * 1 2 3 28 28 H 1.08006 * 119.97074 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.03119 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46851 * 179.97438 * 9 7 6 31 31 H 1.08992 * 109.47253 * 300.00099 * 9 7 6 32 32 H 1.09000 * 109.47010 * 60.00154 * 9 7 6 33 33 H 1.09000 * 109.47408 * 55.00372 * 10 7 6 34 34 H 1.09000 * 109.47241 * 175.00184 * 10 7 6 35 35 H 0.97004 * 120.00587 * 179.97438 * 14 13 11 36 36 H 1.08990 * 109.47641 * 59.99594 * 22 20 19 37 37 H 1.09001 * 109.46849 * 180.02562 * 22 20 19 38 38 H 1.09006 * 109.47021 * 299.99518 * 22 20 19 39 39 H 1.00901 * 110.99998 * 60.00251 * 23 20 19 40 40 H 1.00904 * 110.99327 * 183.95476 * 23 20 19 41 41 H 1.07999 * 119.97431 * 179.74670 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0016 6 8 5.6325 0.0000 0.0027 7 6 6.2811 1.2675 0.1242 8 1 5.6958 1.9140 0.7781 9 6 6.4009 1.9137 -1.2575 10 6 7.6773 1.0710 0.7181 11 6 7.5552 0.5490 2.1265 12 1 6.5793 0.3744 2.5550 13 6 8.6893 0.2933 2.8677 14 7 9.8777 0.5054 2.3458 15 14 8.5380 -0.3545 4.6133 16 1 7.8186 -1.6535 4.5986 17 1 9.8932 -0.5451 5.1898 18 1 7.7819 0.6208 5.4393 19 6 3.5788 -1.2005 0.0027 20 6 4.3304 -2.5068 0.0033 21 1 5.1942 -2.4286 0.6634 22 6 4.8013 -2.8248 -1.4173 23 7 3.4467 -3.5799 0.4780 24 6 2.1971 -1.1979 -0.0027 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6559 2.1328 -0.0004 29 1 4.1171 2.1370 0.0001 30 1 6.8953 2.8807 -1.1647 31 1 6.9862 1.2672 -1.9114 32 1 5.4062 2.0536 -1.6806 33 1 8.2325 0.3551 0.1121 34 1 8.2052 2.0246 0.7286 35 1 10.6756 0.3258 2.8674 36 1 5.4569 -2.0286 -1.7696 37 1 5.3445 -3.7698 -1.4170 38 1 3.9374 -2.9030 -2.0775 39 1 2.6377 -3.6724 -0.1179 40 1 3.9455 -4.4542 0.5489 41 1 1.6557 -2.1324 -0.0060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709960090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:10 Heat of formation + Delta-G solvation = -34.323599 kcal Electronic energy + Delta-G solvation = -20323.239720 eV Core-core repulsion = 17395.503709 eV Total energy + Delta-G solvation = -2927.736011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03469 -37.60096 -35.79373 -33.52438 -31.88490 -31.09782 -30.00593 -28.44186 -27.47353 -26.03096 -23.51919 -23.31416 -21.88091 -19.94846 -19.70693 -17.67838 -16.35674 -16.21469 -15.39685 -14.80030 -14.54722 -14.35987 -14.28197 -13.66955 -13.48558 -13.24794 -13.12296 -12.97896 -12.55002 -12.15048 -12.06785 -11.92378 -11.75772 -11.49119 -11.41367 -11.34215 -10.94133 -10.75789 -10.65536 -10.48949 -10.27344 -9.91025 -9.35426 -9.09828 -8.70716 -8.43905 -8.37039 -7.47009 -6.00431 -4.01617 1.66083 1.80797 3.36402 3.39687 3.44484 3.94922 4.07683 4.47906 4.68637 4.94617 5.09817 5.17144 5.36527 5.42005 5.45717 5.51026 5.60722 5.62364 5.67614 5.72621 5.79686 5.87906 5.94332 5.98785 6.09606 6.17572 6.26235 6.30166 6.42285 6.57821 6.62583 6.75990 6.85712 6.87626 7.15159 7.31582 7.51602 7.54950 7.60601 7.96247 8.19481 8.38227 9.02054 9.61883 11.10865 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.005998 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.369020 B = 4667.355292 C = 5037.857316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.145 4.145 3 C -0.084 4.084 4 C -0.212 4.212 5 C 0.150 3.850 6 O -0.288 6.288 7 C 0.086 3.914 8 H 0.062 0.938 9 C -0.177 4.177 10 C 0.027 3.973 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.113 4.113 20 C 0.135 3.865 21 H 0.101 0.899 22 C -0.176 4.176 23 N -0.842 5.842 24 C -0.069 4.069 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.333 0.667 40 H 0.341 0.659 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 -2.543 -7.851 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.145 4.145 3 C -0.103 4.103 4 C -0.230 4.230 5 C 0.102 3.898 6 O -0.200 6.200 7 C 0.031 3.969 8 H 0.080 0.920 9 C -0.234 4.234 10 C -0.010 4.010 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.114 4.114 20 C 0.024 3.976 21 H 0.119 0.881 22 C -0.235 4.235 23 N -0.371 5.371 24 C -0.088 4.088 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.618 -2.276 -7.156 16.433 hybrid contribution 0.231 -0.466 0.071 0.525 sum -14.387 -2.742 -7.085 16.269 Atomic orbital electron populations 1.20633 0.91720 1.02141 1.01410 1.19646 0.95635 0.93102 1.06136 1.20725 0.93388 0.97214 0.98932 1.21296 0.95018 0.97600 1.09116 1.18964 0.84231 0.92987 0.93598 1.86254 1.14078 1.33913 1.85786 1.22852 0.97110 0.82211 0.94758 0.92040 1.22409 1.01271 1.01333 0.98420 1.19247 0.87614 0.98214 0.95909 1.21081 0.92568 1.43446 0.98010 0.92648 1.24960 0.95317 0.95650 0.98305 1.69938 0.97366 1.49126 1.37256 0.86663 0.76992 0.79707 0.84743 1.20105 1.21307 1.20271 1.19029 0.93069 0.92510 1.06773 1.20098 0.94760 0.87897 0.94859 0.88110 1.22514 1.01284 1.02055 0.97642 1.58973 1.11227 1.09357 1.57576 1.20520 0.92471 0.97250 0.98511 0.92127 0.92063 0.92176 0.86609 0.85294 0.91476 0.92021 0.93324 0.95375 0.94500 0.92926 0.91203 0.92783 0.93348 0.85405 0.84634 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.14 -2.00 5.88 -104.60 -0.62 -2.61 16 3 C -0.08 -1.22 9.69 -39.61 -0.38 -1.61 16 4 C -0.21 -3.53 8.24 -39.43 -0.33 -3.86 16 5 C 0.15 2.79 6.57 -39.22 -0.26 2.53 16 6 O -0.29 -6.05 8.70 -19.43 -0.17 -6.21 16 7 C 0.09 1.79 2.17 -26.73 -0.06 1.73 16 8 H 0.06 1.26 6.31 -51.93 -0.33 0.94 16 9 C -0.18 -3.01 9.17 37.16 0.34 -2.67 16 10 C 0.03 0.68 4.68 -27.89 -0.13 0.55 16 11 C -0.51 -14.54 8.88 -34.44 -0.31 -14.84 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.11 -1.89 5.10 -104.47 -0.53 -2.42 16 20 C 0.13 2.11 3.25 -68.86 -0.22 1.89 16 21 H 0.10 1.91 7.85 -51.93 -0.41 1.50 16 22 C -0.18 -2.44 9.46 37.16 0.35 -2.09 16 23 N -0.84 -10.80 8.71 -5.65 -0.05 -10.85 16 24 C -0.07 -1.01 8.90 -39.60 -0.35 -1.36 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.13 2.06 5.43 -52.49 -0.28 1.78 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.09 8.05 -51.93 -0.42 0.68 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.33 3.57 7.28 -39.29 -0.29 3.29 16 40 H 0.34 3.79 9.07 -39.29 -0.36 3.43 16 41 H 0.12 1.52 6.25 -52.49 -0.33 1.20 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -30.61 333.46 -8.24 -38.85 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.53 Total: 6.01 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.23 Total: -23.86 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.69 Total: -36.90 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.17 Total: -6.21 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.61 -8.24 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709960090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.523 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds