Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38287 * 119.94465 * 2 1 4 4 C 1.38118 * 120.05876 * 179.97438 * 3 2 1 5 5 C 1.38756 * 119.94136 * 359.97438 * 4 3 2 6 6 O 1.35902 * 120.05557 * 180.02562 * 5 4 3 7 7 C 1.42900 * 116.99832 * 5.47908 * 6 5 4 8 8 H 1.09001 * 109.47381 * 35.03454 * 7 6 5 9 9 C 1.53002 * 109.47092 * 275.03354 * 7 6 5 10 10 C 1.52999 * 109.46909 * 155.03409 * 7 6 5 11 11 C 1.50695 * 109.47151 * 294.99911 * 10 7 6 12 12 H 1.08002 * 120.00328 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99948 * 179.97438 * 11 10 7 14 14 N 1.31510 * 120.00190 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00063 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47060 * 60.00236 * 15 13 11 17 17 H 1.48497 * 109.47090 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46982 * 300.00290 * 15 13 11 19 19 C 1.38705 * 119.89027 * 359.97438 * 5 4 3 20 20 C 1.50706 * 120.03106 * 179.97438 * 19 5 4 21 21 H 1.08996 * 109.46879 * 39.99746 * 20 19 5 22 22 C 1.52999 * 109.46796 * 280.00202 * 20 19 5 23 23 N 1.46899 * 109.46988 * 159.99994 * 20 19 5 24 24 C 1.38173 * 119.94510 * 0.25550 * 19 5 4 25 25 H 1.09006 * 109.46609 * 89.99943 * 1 2 3 26 26 H 1.09001 * 109.46962 * 209.99916 * 1 2 3 27 27 H 1.09002 * 109.47004 * 329.99902 * 1 2 3 28 28 H 1.08006 * 119.97074 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.03119 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46851 * 179.97438 * 9 7 6 31 31 H 1.08992 * 109.47253 * 300.00099 * 9 7 6 32 32 H 1.09000 * 109.47010 * 60.00154 * 9 7 6 33 33 H 1.09000 * 109.47408 * 55.00372 * 10 7 6 34 34 H 1.09000 * 109.47241 * 175.00184 * 10 7 6 35 35 H 0.97004 * 120.00587 * 179.97438 * 14 13 11 36 36 H 1.08990 * 109.47641 * 59.99594 * 22 20 19 37 37 H 1.09001 * 109.46849 * 180.02562 * 22 20 19 38 38 H 1.09006 * 109.47021 * 299.99518 * 22 20 19 39 39 H 1.00901 * 110.99998 * 60.00251 * 23 20 19 40 40 H 1.00904 * 110.99327 * 183.95476 * 23 20 19 41 41 H 1.07999 * 119.97431 * 179.74670 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0000 0.0016 6 8 5.6325 0.0000 0.0027 7 6 6.2811 1.2675 0.1242 8 1 5.6958 1.9140 0.7781 9 6 6.4009 1.9137 -1.2575 10 6 7.6773 1.0710 0.7181 11 6 7.5552 0.5490 2.1265 12 1 6.5793 0.3744 2.5550 13 6 8.6893 0.2933 2.8677 14 7 9.8777 0.5054 2.3458 15 14 8.5380 -0.3545 4.6133 16 1 7.8186 -1.6535 4.5986 17 1 9.8932 -0.5451 5.1898 18 1 7.7819 0.6208 5.4393 19 6 3.5788 -1.2005 0.0027 20 6 4.3304 -2.5068 0.0033 21 1 5.1942 -2.4286 0.6634 22 6 4.8013 -2.8248 -1.4173 23 7 3.4467 -3.5799 0.4780 24 6 2.1971 -1.1979 -0.0027 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6559 2.1328 -0.0004 29 1 4.1171 2.1370 0.0001 30 1 6.8953 2.8807 -1.1647 31 1 6.9862 1.2672 -1.9114 32 1 5.4062 2.0536 -1.6806 33 1 8.2325 0.3551 0.1121 34 1 8.2052 2.0246 0.7286 35 1 10.6756 0.3258 2.8674 36 1 5.4569 -2.0286 -1.7696 37 1 5.3445 -3.7698 -1.4170 38 1 3.9374 -2.9030 -2.0775 39 1 2.6377 -3.6724 -0.1179 40 1 3.9455 -4.4542 0.5489 41 1 1.6557 -2.1324 -0.0060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709960090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = -52.995778 kcal Electronic energy + Delta-G solvation = -20324.049407 eV Core-core repulsion = 17395.503709 eV Total energy + Delta-G solvation = -2928.545697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34460 -38.98774 -36.93015 -35.49078 -33.58127 -32.35780 -31.21499 -29.54545 -29.37532 -27.11926 -25.24669 -24.71080 -23.30832 -21.30889 -21.05692 -19.07343 -18.53423 -17.50028 -16.69947 -16.46284 -16.05813 -15.75611 -15.56942 -14.86717 -14.68382 -14.55730 -14.25646 -14.17185 -14.01142 -13.75250 -13.51150 -13.37870 -13.18902 -13.00794 -12.67906 -12.65773 -12.57617 -12.48030 -12.27069 -11.87221 -11.69124 -11.56483 -11.23022 -11.01442 -10.59838 -9.81531 -9.58649 -8.74516 -8.22498 -6.31059 0.46608 0.59121 1.35937 1.38616 1.46727 2.38469 2.51499 2.86051 3.12065 3.58854 3.82161 4.01218 4.02362 4.09536 4.21409 4.30669 4.33223 4.40227 4.46393 4.54331 4.63236 4.76069 4.84905 4.90837 4.95431 4.98039 5.01161 5.15093 5.16369 5.19274 5.29621 5.37687 5.45518 5.53446 5.63107 5.74349 5.75398 6.05697 6.18352 6.24762 6.63501 6.75250 6.81068 7.36215 8.88909 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.005998 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.369020 B = 4667.355292 C = 5037.857316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.137 4.137 3 C -0.089 4.089 4 C -0.221 4.221 5 C 0.111 3.889 6 O -0.314 6.314 7 C 0.095 3.905 8 H 0.060 0.940 9 C -0.165 4.165 10 C 0.031 3.969 11 C -0.529 4.529 12 H 0.046 0.954 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.955 3.045 16 H -0.275 1.275 17 H -0.277 1.277 18 H -0.268 1.268 19 C -0.127 4.127 20 C 0.139 3.861 21 H 0.056 0.944 22 C -0.167 4.167 23 N -0.840 5.840 24 C -0.072 4.072 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.069 0.931 33 H -0.002 1.002 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.348 0.652 40 H 0.351 0.649 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.828 -2.883 -7.794 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C -0.106 4.106 4 C -0.239 4.239 5 C 0.064 3.936 6 O -0.227 6.227 7 C 0.039 3.961 8 H 0.078 0.922 9 C -0.222 4.222 10 C -0.006 4.006 11 C -0.567 4.567 12 H 0.065 0.935 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.780 3.220 16 H -0.200 1.200 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.128 4.128 20 C 0.028 3.972 21 H 0.075 0.925 22 C -0.226 4.226 23 N -0.372 5.372 24 C -0.090 4.090 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.017 0.983 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.571 -2.619 -7.108 19.134 hybrid contribution 1.035 -0.391 0.038 1.107 sum -16.536 -3.009 -7.069 18.234 Atomic orbital electron populations 1.20709 0.88742 1.03380 1.02905 1.20143 0.97764 0.92394 1.03473 1.21086 0.92526 0.98942 0.98096 1.21434 0.96229 0.96908 1.09371 1.19306 0.83163 0.94644 0.96455 1.86175 1.16024 1.33628 1.86914 1.22527 0.94316 0.82711 0.96561 0.92192 1.22288 1.02593 1.01326 0.96033 1.19082 0.90420 0.96348 0.94712 1.21372 0.92271 1.43590 0.99458 0.93543 1.25795 0.94964 0.95828 1.02502 1.70046 0.98029 1.49979 1.38876 0.85650 0.77440 0.79056 0.79846 1.20005 1.20211 1.19245 1.19307 0.94226 0.92257 1.06992 1.19850 0.93778 0.88802 0.94807 0.92542 1.22420 1.01648 1.01628 0.96880 1.58876 1.11373 1.09169 1.57798 1.20835 0.91489 0.98828 0.97839 0.90359 0.90908 0.90960 0.83817 0.85288 0.90195 0.92541 0.91211 0.98318 0.95839 0.92659 0.93733 0.91576 0.91326 0.83682 0.83504 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.14 -3.36 5.88 -19.85 -0.12 -3.48 16 3 C -0.09 -2.36 9.69 22.25 0.22 -2.14 16 4 C -0.22 -7.25 8.24 22.37 0.18 -7.06 16 5 C 0.11 4.18 6.57 22.51 0.15 4.33 16 6 O -0.31 -13.83 8.70 -92.45 -0.80 -14.64 16 7 C 0.09 4.08 2.17 30.59 0.07 4.15 16 8 H 0.06 2.56 6.31 -2.39 -0.02 2.54 16 9 C -0.17 -5.69 9.17 71.98 0.66 -5.03 16 10 C 0.03 1.68 4.68 29.85 0.14 1.82 16 11 C -0.53 -31.15 8.88 25.60 0.23 -30.92 16 12 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 13 C 0.01 0.42 5.46 84.66 0.46 0.88 16 14 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 15 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 16 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 C -0.13 -4.22 5.10 -19.77 -0.10 -4.32 16 20 C 0.14 4.41 3.25 44.17 0.14 4.56 16 21 H 0.06 2.28 7.85 -2.39 -0.02 2.26 16 22 C -0.17 -4.62 9.46 71.98 0.68 -3.94 16 23 N -0.84 -20.46 8.71 -171.80 -1.50 -21.95 16 24 C -0.07 -1.93 8.90 22.26 0.20 -1.73 16 25 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 27 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.13 4.10 5.43 -2.91 -0.02 4.08 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.09 6.91 -2.39 -0.02 2.08 16 33 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.04 1.45 8.05 -2.39 -0.02 1.43 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.35 6.60 7.28 -89.69 -0.65 5.94 16 40 H 0.35 7.37 9.07 -89.69 -0.81 6.55 16 41 H 0.15 3.14 6.25 -2.91 -0.02 3.12 16 Total: -1.00 -68.35 333.46 3.19 -65.16 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.44 Total: 23.80 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 3.62 Total: -43.81 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.21 Total: -78.60 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.80 Total: -14.64 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -68.35 3.19 -65.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709960090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.163 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds