Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38285 * 119.94651 * 2 1 4 4 C 1.38124 * 120.05683 * 179.74210 * 3 2 1 5 5 C 1.38755 * 119.93881 * 0.51461 * 4 3 2 6 6 O 1.35905 * 120.04954 * 179.73754 * 5 4 3 7 7 C 1.42895 * 117.00176 * 354.52412 * 6 5 4 8 8 H 1.08993 * 109.47192 * 324.93324 * 7 6 5 9 9 C 1.52998 * 109.47653 * 84.93900 * 7 6 5 10 10 C 1.53004 * 109.47090 * 204.93986 * 7 6 5 11 11 C 1.50697 * 109.47443 * 64.99388 * 10 7 6 12 12 H 1.08004 * 119.99724 * 0.02562 * 11 10 7 13 13 C 1.37875 * 119.99920 * 180.27690 * 11 10 7 14 14 N 1.31508 * 120.00431 * 359.72473 * 13 11 10 15 15 Si 1.86806 * 119.99879 * 179.72795 * 13 11 10 16 16 H 1.48497 * 109.47026 * 59.99640 * 15 13 11 17 17 H 1.48500 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47102 * 300.00117 * 15 13 11 19 19 C 1.38704 * 119.89169 * 359.46933 * 5 4 3 20 20 C 1.50703 * 120.02659 * 180.29918 * 19 5 4 21 21 H 1.08996 * 109.47242 * 39.99347 * 20 19 5 22 22 C 1.53000 * 109.47003 * 279.99391 * 20 19 5 23 23 N 1.46897 * 109.46981 * 160.00067 * 20 19 5 24 24 C 1.38165 * 119.94637 * 0.27239 * 19 5 4 25 25 H 1.08995 * 109.47249 * 270.01766 * 1 2 3 26 26 H 1.09002 * 109.47047 * 30.01989 * 1 2 3 27 27 H 1.09003 * 109.47304 * 150.01786 * 1 2 3 28 28 H 1.07995 * 119.96986 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.02843 * 180.28265 * 4 3 2 30 30 H 1.08998 * 109.47659 * 180.02562 * 9 7 6 31 31 H 1.09003 * 109.46894 * 300.00299 * 9 7 6 32 32 H 1.09000 * 109.47022 * 59.99204 * 9 7 6 33 33 H 1.09011 * 109.46457 * 304.99597 * 10 7 6 34 34 H 1.08997 * 109.47468 * 185.00256 * 10 7 6 35 35 H 0.96999 * 120.00696 * 179.97438 * 14 13 11 36 36 H 1.09009 * 109.46901 * 60.00203 * 22 20 19 37 37 H 1.08996 * 109.47479 * 179.97438 * 22 20 19 38 38 H 1.08998 * 109.47568 * 300.00636 * 22 20 19 39 39 H 1.00903 * 111.00057 * 176.04578 * 23 20 19 40 40 H 1.00905 * 110.99817 * 299.99634 * 23 20 19 41 41 H 1.08001 * 119.97500 * 180.02562 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0054 5 6 4.2734 -0.0001 0.0000 6 8 5.6325 -0.0001 -0.0001 7 6 6.2812 1.2678 -0.1160 8 1 5.6967 1.9167 -0.7681 9 6 6.3995 1.9087 1.2682 10 6 7.6781 1.0736 -0.7092 11 6 7.5577 0.5569 -2.1197 12 1 6.5822 0.3846 -2.5502 13 6 8.6927 0.2991 -2.8587 14 7 9.8804 0.5093 -2.3347 15 14 8.5434 -0.3486 -4.6045 16 1 7.7905 0.6278 -5.4320 17 1 9.8993 -0.5417 -5.1785 18 1 7.8217 -1.6464 -4.5910 19 6 3.5787 -1.2007 0.0003 20 6 4.3303 -2.5069 0.0013 21 1 5.1936 -2.4288 0.6621 22 6 4.8022 -2.8248 -1.4190 23 7 3.4463 -3.5801 0.4752 24 6 2.1970 -1.1980 0.0004 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5136 28 1 1.6560 2.1327 0.0004 29 1 4.1172 2.1369 0.0100 30 1 6.8940 2.8761 1.1797 31 1 5.4043 2.0471 1.6908 32 1 6.9840 1.2597 1.9203 33 1 8.2326 0.3552 -0.1052 34 1 8.2061 2.0272 -0.7154 35 1 10.6790 0.3276 -2.8545 36 1 5.4581 -2.0284 -1.7707 37 1 5.3462 -3.7693 -1.4183 38 1 3.9389 -2.9028 -2.0798 39 1 3.9065 -4.4766 0.4243 40 1 3.1209 -3.3934 1.4119 41 1 1.6556 -2.1325 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709960092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = -53.708980 kcal Electronic energy + Delta-G solvation = -20385.678166 eV Core-core repulsion = 17457.101541 eV Total energy + Delta-G solvation = -2928.576624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33314 -38.95110 -36.81831 -35.48203 -33.56416 -32.34609 -31.22915 -29.70650 -29.36845 -27.12637 -25.24442 -24.62865 -23.27424 -21.28113 -20.91336 -18.97915 -18.51913 -17.29767 -16.75018 -16.54822 -16.14892 -15.71797 -15.52065 -15.36266 -14.70197 -14.65939 -14.28844 -14.09992 -13.78151 -13.50411 -13.40010 -13.20394 -13.10056 -12.88127 -12.83595 -12.66370 -12.59133 -12.48487 -12.26070 -12.03630 -11.69904 -11.53895 -11.22973 -11.01679 -10.59378 -9.79916 -9.57609 -8.75765 -8.21904 -6.30240 0.46774 0.59366 1.36116 1.38346 1.46318 2.38447 2.50730 2.87236 3.12931 3.52510 3.82438 4.01955 4.07572 4.12629 4.21057 4.32035 4.39464 4.41154 4.46967 4.58006 4.65014 4.78237 4.89570 4.94348 4.96020 4.98920 5.01844 5.15485 5.19773 5.29762 5.30084 5.37646 5.45617 5.55098 5.59157 5.75216 5.76888 6.07657 6.18852 6.22456 6.62284 6.75139 6.81512 7.36928 8.89643 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.006184 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.123835 B = 4526.362922 C = 5072.681593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.141 4.141 3 C -0.086 4.086 4 C -0.223 4.223 5 C 0.112 3.888 6 O -0.314 6.314 7 C 0.095 3.905 8 H 0.061 0.939 9 C -0.166 4.166 10 C 0.031 3.969 11 C -0.525 4.525 12 H 0.048 0.952 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.952 3.048 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.272 1.272 19 C -0.135 4.135 20 C 0.147 3.853 21 H 0.025 0.975 22 C -0.135 4.135 23 N -0.834 5.834 24 C -0.063 4.063 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.055 0.945 33 H -0.003 1.003 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.351 0.649 40 H 0.348 0.652 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 -2.583 6.703 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C -0.104 4.104 4 C -0.242 4.242 5 C 0.066 3.934 6 O -0.228 6.228 7 C 0.039 3.961 8 H 0.079 0.921 9 C -0.223 4.223 10 C -0.006 4.006 11 C -0.563 4.563 12 H 0.067 0.933 13 C -0.190 4.190 14 N -0.570 5.570 15 Si 0.777 3.223 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.197 1.197 19 C -0.136 4.136 20 C 0.036 3.964 21 H 0.043 0.957 22 C -0.192 4.192 23 N -0.366 5.366 24 C -0.081 4.081 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.016 0.984 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.165 0.835 40 H 0.162 0.838 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.419 -2.544 6.073 18.621 hybrid contribution 1.552 -0.088 -0.192 1.567 sum -15.866 -2.632 5.881 17.124 Atomic orbital electron populations 1.20696 0.88845 1.03275 1.02860 1.20179 0.97748 0.92457 1.03752 1.21094 0.92535 0.98916 0.97818 1.21424 0.96196 0.96890 1.09640 1.19343 0.83127 0.94684 0.96262 1.86175 1.16041 1.33597 1.86975 1.22528 0.94358 0.82695 0.96529 0.92089 1.22295 1.02572 1.01367 0.96083 1.19083 0.90329 0.96322 0.94826 1.21354 0.92283 1.43516 0.99191 0.93326 1.25779 0.94974 0.95872 1.02403 1.70046 0.98041 1.50043 1.38901 0.85689 0.77424 0.79198 0.79956 1.19265 1.20415 1.19702 1.19339 0.94304 0.92027 1.07921 1.19693 0.92049 0.88703 0.95969 0.95663 1.21682 1.00635 1.01049 0.95868 1.58712 1.42879 1.04390 1.30596 1.20946 0.91551 0.98866 0.96774 0.90446 0.90935 0.91061 0.83839 0.85289 0.90175 0.91236 0.92628 0.98424 0.95888 0.92715 0.94397 0.91831 0.91989 0.83482 0.83849 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.14 -3.49 5.88 -19.85 -0.12 -3.61 16 3 C -0.09 -2.28 9.69 22.25 0.22 -2.06 16 4 C -0.22 -7.26 8.24 22.37 0.18 -7.08 16 5 C 0.11 4.21 6.57 22.50 0.15 4.36 16 6 O -0.31 -13.75 8.69 -92.48 -0.80 -14.56 16 7 C 0.09 4.05 2.17 30.59 0.07 4.12 16 8 H 0.06 2.57 6.31 -2.39 -0.02 2.55 16 9 C -0.17 -5.70 9.17 71.98 0.66 -5.04 16 10 C 0.03 1.67 4.68 29.85 0.14 1.80 16 11 C -0.53 -30.45 8.88 25.60 0.23 -30.22 16 12 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 13 C 0.01 0.45 5.46 84.65 0.46 0.91 16 14 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 15 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 C -0.13 -4.48 5.06 -19.77 -0.10 -4.58 16 20 C 0.15 4.67 3.24 44.17 0.14 4.81 16 21 H 0.03 0.91 7.85 -2.39 -0.02 0.89 16 22 C -0.13 -4.63 9.43 71.98 0.68 -3.96 16 23 N -0.83 -19.15 7.90 -171.81 -1.36 -20.51 16 24 C -0.06 -1.74 8.91 22.25 0.20 -1.54 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 27 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 29 H 0.13 4.06 5.43 -2.91 -0.02 4.05 16 30 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.08 6.91 -2.39 -0.02 2.07 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.04 1.60 8.05 -2.38 -0.02 1.58 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.35 6.87 8.99 -89.69 -0.81 6.06 16 40 H 0.35 6.93 8.94 -89.69 -0.80 6.13 16 41 H 0.15 3.59 7.14 -2.91 -0.02 3.57 16 Total: -1.00 -66.33 335.04 3.19 -63.14 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.58 Total: 23.91 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 3.62 Total: -43.06 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.07 Total: -76.83 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.80 Total: -14.56 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.33 3.19 -63.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709960092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.432 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds