Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38171 * 120.02555 * 2 1 4 4 C 1.38241 * 120.05077 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.94317 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47104 * 340.00501 * 5 4 3 7 7 C 1.53000 * 109.47066 * 100.00376 * 5 4 3 8 8 N 1.46895 * 109.47456 * 220.00184 * 5 4 3 9 9 C 1.38284 * 120.11624 * 0.25421 * 4 3 2 10 10 C 1.38130 * 120.05423 * 359.45127 * 9 4 3 11 11 C 1.38707 * 120.02995 * 180.02562 * 2 1 3 12 12 O 1.35904 * 120.05334 * 0.02562 * 11 2 1 13 13 C 1.42903 * 117.00046 * 185.45638 * 12 11 2 14 14 H 1.09002 * 109.46607 * 35.04592 * 13 12 11 15 15 C 1.52995 * 109.47168 * 275.04650 * 13 12 11 16 16 C 1.53000 * 109.47041 * 155.04532 * 13 12 11 17 17 C 1.50698 * 109.47301 * 295.00490 * 16 13 12 18 18 H 1.08003 * 119.99694 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00298 * 180.02562 * 17 16 13 20 20 N 1.31513 * 119.99925 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99749 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46788 * 90.00268 * 21 19 17 23 23 H 1.48495 * 109.47052 * 210.00355 * 21 19 17 24 24 H 1.48495 * 109.47102 * 330.00711 * 21 19 17 25 25 H 1.09004 * 109.46858 * 90.00028 * 1 2 3 26 26 H 1.08993 * 109.47491 * 209.99670 * 1 2 3 27 27 H 1.09004 * 109.47395 * 330.00441 * 1 2 3 28 28 H 1.07994 * 119.97598 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47230 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.46875 * 299.99649 * 7 5 4 31 31 H 1.08995 * 109.47571 * 60.00022 * 7 5 4 32 32 H 1.00903 * 110.99914 * 300.00200 * 8 5 4 33 33 H 1.00904 * 111.00159 * 63.94991 * 8 5 4 34 34 H 1.08004 * 119.97747 * 179.70369 * 9 4 3 35 35 H 1.07999 * 120.02948 * 180.24653 * 10 9 4 36 36 H 1.09003 * 109.47524 * 60.00310 * 15 13 12 37 37 H 1.09006 * 109.47317 * 179.97438 * 15 13 12 38 38 H 1.08997 * 109.47605 * 299.99833 * 15 13 12 39 39 H 1.09002 * 109.47051 * 55.00109 * 16 13 12 40 40 H 1.09002 * 109.47247 * 175.00170 * 16 13 12 41 41 H 0.97000 * 119.99632 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.3325 2.5031 -0.0011 6 1 3.6765 3.2996 -0.3524 7 6 4.8046 2.8205 1.4192 8 7 5.4959 2.3982 -0.8918 9 6 4.2752 0.0010 -0.0064 10 6 3.5887 -1.1976 -0.0002 11 6 2.2012 -1.2009 -0.0005 12 8 1.5234 -2.3788 -0.0016 13 6 2.2984 -3.5734 0.1190 14 1 3.1500 -3.3893 0.7740 15 6 2.8000 -3.9975 -1.2628 16 6 1.4311 -4.6864 0.7105 17 6 1.0381 -4.3222 2.1190 18 1 1.3737 -3.3902 2.5494 19 6 0.2509 -5.1792 2.8586 20 7 -0.0917 -4.8615 4.0879 21 14 -0.3290 -6.7914 2.1144 22 1 0.6662 -7.8556 2.4019 23 1 -1.6390 -7.1662 2.7046 24 1 -0.4749 -6.6342 0.6450 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 1.6585 2.1316 0.0004 29 1 5.3478 3.7654 1.4189 30 1 3.9413 2.8984 2.0801 31 1 5.4605 2.0240 1.7706 32 1 6.1197 1.6661 -0.5870 33 1 5.2075 2.2529 -1.8478 34 1 5.3552 0.0042 -0.0116 35 1 4.1314 -2.1313 -0.0008 36 1 3.4179 -3.2046 -1.6842 37 1 3.3916 -4.9084 -1.1708 38 1 1.9485 -4.1815 -1.9178 39 1 0.5342 -4.8096 0.1034 40 1 1.9943 -5.6196 0.7202 41 1 -0.6458 -5.4643 4.6081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709962366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -33.979008 kcal Electronic energy + Delta-G solvation = -19973.108454 eV Core-core repulsion = 17045.387386 eV Total energy + Delta-G solvation = -2927.721068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11611 -38.07746 -35.50829 -33.37680 -32.33657 -31.56945 -29.75478 -28.47860 -28.03325 -26.42431 -23.61140 -22.72372 -22.34727 -19.92174 -19.72146 -17.70282 -16.77754 -16.37051 -15.58413 -15.39729 -14.81935 -14.54083 -14.32253 -13.82514 -13.47551 -13.21151 -12.92290 -12.76743 -12.59658 -12.33421 -12.15174 -11.99162 -11.92695 -11.80039 -11.61655 -11.40717 -11.16910 -11.02759 -10.71558 -10.53322 -10.28850 -9.76106 -9.60300 -9.25607 -8.94861 -8.58479 -8.57474 -7.59787 -6.06321 -4.04583 1.54581 1.67269 3.26690 3.35270 3.37719 3.81722 3.95994 4.41512 4.49496 4.79294 4.93194 5.07330 5.22185 5.27524 5.32768 5.42241 5.43780 5.54104 5.63821 5.69545 5.73079 5.87312 5.90047 5.97185 5.99973 6.10247 6.10987 6.14429 6.34835 6.45713 6.49284 6.61767 6.67338 6.79341 6.92842 7.02832 7.08308 7.21023 7.29291 7.69268 8.06792 8.49127 8.98483 9.54167 11.07177 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.004624 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.993523 B = 6053.513573 C = 6276.627747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.172 4.172 5 C 0.135 3.865 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.841 5.841 9 C -0.085 4.085 10 C -0.208 4.208 11 C 0.150 3.850 12 O -0.286 6.286 13 C 0.095 3.905 14 H 0.067 0.933 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.515 4.515 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.338 0.662 33 H 0.341 0.659 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 11.037 -10.532 17.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.121 4.121 3 C -0.095 4.095 4 C -0.174 4.174 5 C 0.023 3.977 6 H 0.101 0.899 7 C -0.198 4.198 8 N -0.370 5.370 9 C -0.104 4.104 10 C -0.226 4.226 11 C 0.103 3.897 12 O -0.199 6.199 13 C 0.039 3.961 14 H 0.085 0.915 15 C -0.237 4.237 16 C -0.048 4.048 17 C -0.553 4.553 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.683 11.679 -10.156 17.279 hybrid contribution -0.465 -2.071 -0.350 2.152 sum 7.217 9.607 -10.506 15.961 Atomic orbital electron populations 1.20608 0.90587 1.03253 1.01782 1.19292 0.96615 0.90420 1.05784 1.20648 0.93175 0.96621 0.99095 1.20509 0.94302 0.95942 1.06627 1.20271 0.90491 0.93028 0.93863 0.89888 1.21799 1.01392 1.01666 0.94923 1.59102 1.17710 1.54031 1.06137 1.20554 0.98846 0.91597 0.99400 1.21290 0.93523 0.99087 1.08732 1.19012 0.90320 0.86904 0.93450 1.86241 1.36010 1.11835 1.85787 1.22563 0.94943 0.83820 0.94757 0.91513 1.22444 1.01528 1.01430 0.98313 1.19721 0.95475 0.92056 0.97509 1.20992 1.31859 1.06665 0.95792 0.90944 1.24988 0.95614 0.98035 0.94669 1.69911 1.37394 1.37325 1.09330 0.86833 0.78459 0.84252 0.80082 1.20273 1.21238 1.18984 0.91944 0.90139 0.92184 0.86025 0.92034 0.92025 0.92723 0.84840 0.84683 0.86863 0.85315 0.92986 0.91386 0.91922 0.95357 0.95009 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.79 36.01 0.35 -1.28 16 2 C -0.12 -1.99 5.89 -104.47 -0.62 -2.60 16 3 C -0.08 -1.07 9.32 -39.61 -0.37 -1.44 16 4 C -0.17 -2.21 4.95 -104.60 -0.52 -2.73 16 5 C 0.14 1.42 3.59 -68.87 -0.25 1.18 16 6 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 7 C -0.14 -1.44 9.47 37.16 0.35 -1.09 16 8 N -0.84 -7.99 9.05 -5.66 -0.05 -8.04 16 9 C -0.09 -1.16 9.29 -39.60 -0.37 -1.53 16 10 C -0.21 -3.33 8.24 -39.43 -0.33 -3.66 16 11 C 0.15 2.75 6.57 -39.22 -0.26 2.49 16 12 O -0.29 -5.96 8.60 -19.44 -0.17 -6.12 16 13 C 0.09 1.89 2.17 -26.73 -0.06 1.83 16 14 H 0.07 1.33 6.31 -51.93 -0.33 1.00 16 15 C -0.18 -2.83 9.17 37.16 0.34 -2.49 16 16 C -0.01 -0.25 3.75 -27.88 -0.10 -0.35 16 17 C -0.52 -14.63 9.43 -34.44 -0.32 -14.96 16 18 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 21 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.47 7.53 -51.93 -0.39 1.07 16 27 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.12 1.40 8.03 -52.49 -0.42 0.98 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 3.01 7.33 -39.29 -0.29 2.72 16 33 H 0.34 2.98 9.06 -39.29 -0.36 2.63 16 34 H 0.11 1.26 6.65 -52.48 -0.35 0.91 16 35 H 0.13 1.97 5.43 -52.49 -0.28 1.69 16 36 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 40 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -30.96 330.21 -7.88 -38.84 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.50 Total: 5.36 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -2.24 Total: -24.75 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.72 Total: -35.06 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.17 Total: -6.12 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.96 -7.88 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.865 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds