Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38171 * 120.02555 * 2 1 4 4 C 1.38241 * 120.05077 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.94317 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47104 * 340.00501 * 5 4 3 7 7 C 1.53000 * 109.47066 * 100.00376 * 5 4 3 8 8 N 1.46895 * 109.47456 * 220.00184 * 5 4 3 9 9 C 1.38284 * 120.11624 * 0.25421 * 4 3 2 10 10 C 1.38130 * 120.05423 * 359.45127 * 9 4 3 11 11 C 1.38707 * 120.02995 * 180.02562 * 2 1 3 12 12 O 1.35904 * 120.05334 * 0.02562 * 11 2 1 13 13 C 1.42903 * 117.00046 * 185.45638 * 12 11 2 14 14 H 1.09002 * 109.46607 * 35.04592 * 13 12 11 15 15 C 1.52995 * 109.47168 * 275.04650 * 13 12 11 16 16 C 1.53000 * 109.47041 * 155.04532 * 13 12 11 17 17 C 1.50698 * 109.47301 * 295.00490 * 16 13 12 18 18 H 1.08003 * 119.99694 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00298 * 180.02562 * 17 16 13 20 20 N 1.31513 * 119.99925 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99749 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46788 * 90.00268 * 21 19 17 23 23 H 1.48495 * 109.47052 * 210.00355 * 21 19 17 24 24 H 1.48495 * 109.47102 * 330.00711 * 21 19 17 25 25 H 1.09004 * 109.46858 * 90.00028 * 1 2 3 26 26 H 1.08993 * 109.47491 * 209.99670 * 1 2 3 27 27 H 1.09004 * 109.47395 * 330.00441 * 1 2 3 28 28 H 1.07994 * 119.97598 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47230 * 180.02562 * 7 5 4 30 30 H 1.09003 * 109.46875 * 299.99649 * 7 5 4 31 31 H 1.08995 * 109.47571 * 60.00022 * 7 5 4 32 32 H 1.00903 * 110.99914 * 300.00200 * 8 5 4 33 33 H 1.00904 * 111.00159 * 63.94991 * 8 5 4 34 34 H 1.08004 * 119.97747 * 179.70369 * 9 4 3 35 35 H 1.07999 * 120.02948 * 180.24653 * 10 9 4 36 36 H 1.09003 * 109.47524 * 60.00310 * 15 13 12 37 37 H 1.09006 * 109.47317 * 179.97438 * 15 13 12 38 38 H 1.08997 * 109.47605 * 299.99833 * 15 13 12 39 39 H 1.09002 * 109.47051 * 55.00109 * 16 13 12 40 40 H 1.09002 * 109.47247 * 175.00170 * 16 13 12 41 41 H 0.97000 * 119.99632 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.3325 2.5031 -0.0011 6 1 3.6765 3.2996 -0.3524 7 6 4.8046 2.8205 1.4192 8 7 5.4959 2.3982 -0.8918 9 6 4.2752 0.0010 -0.0064 10 6 3.5887 -1.1976 -0.0002 11 6 2.2012 -1.2009 -0.0005 12 8 1.5234 -2.3788 -0.0016 13 6 2.2984 -3.5734 0.1190 14 1 3.1500 -3.3893 0.7740 15 6 2.8000 -3.9975 -1.2628 16 6 1.4311 -4.6864 0.7105 17 6 1.0381 -4.3222 2.1190 18 1 1.3737 -3.3902 2.5494 19 6 0.2509 -5.1792 2.8586 20 7 -0.0917 -4.8615 4.0879 21 14 -0.3290 -6.7914 2.1144 22 1 0.6662 -7.8556 2.4019 23 1 -1.6390 -7.1662 2.7046 24 1 -0.4749 -6.6342 0.6450 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 1.6585 2.1316 0.0004 29 1 5.3478 3.7654 1.4189 30 1 3.9413 2.8984 2.0801 31 1 5.4605 2.0240 1.7706 32 1 6.1197 1.6661 -0.5870 33 1 5.2075 2.2529 -1.8478 34 1 5.3552 0.0042 -0.0116 35 1 4.1314 -2.1313 -0.0008 36 1 3.4179 -3.2046 -1.6842 37 1 3.3916 -4.9084 -1.1708 38 1 1.9485 -4.1815 -1.9178 39 1 0.5342 -4.8096 0.1034 40 1 1.9943 -5.6196 0.7202 41 1 -0.6458 -5.4643 4.6081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709962366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -53.858308 kcal Electronic energy + Delta-G solvation = -19973.970485 eV Core-core repulsion = 17045.387386 eV Total energy + Delta-G solvation = -2928.583100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37394 -39.31827 -36.60691 -35.24600 -33.75061 -33.16526 -30.77275 -29.85616 -29.37188 -27.63779 -25.15655 -24.04420 -23.66899 -21.44793 -20.79418 -19.11964 -18.86639 -17.46227 -16.63130 -16.55557 -16.36948 -15.96715 -15.71257 -15.00771 -14.79082 -14.56132 -14.48872 -14.06851 -13.83439 -13.68367 -13.56507 -13.51634 -13.22894 -12.91293 -12.88687 -12.58763 -12.50428 -12.35866 -12.08789 -11.93054 -11.76368 -11.63830 -11.27307 -11.20659 -10.79293 -9.76884 -9.74313 -8.84455 -8.30196 -6.34494 0.37514 0.48251 1.33795 1.37077 1.48481 2.34488 2.44903 2.76838 3.06080 3.70339 3.78747 3.83621 3.94249 3.97842 4.14346 4.31536 4.33609 4.34982 4.44589 4.52387 4.63200 4.69422 4.78629 4.80907 4.90156 4.93846 4.95600 5.03300 5.10267 5.16965 5.26412 5.30706 5.34002 5.43054 5.55854 5.59253 5.60516 5.95734 6.22723 6.24114 6.58955 6.65174 6.73568 7.28188 8.87270 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.004624 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.993523 B = 6053.513573 C = 6276.627747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.141 4.141 3 C -0.077 4.077 4 C -0.160 4.160 5 C 0.141 3.859 6 H 0.094 0.906 7 C -0.140 4.140 8 N -0.839 5.839 9 C -0.085 4.085 10 C -0.216 4.216 11 C 0.111 3.889 12 O -0.317 6.317 13 C 0.095 3.905 14 H 0.057 0.943 15 C -0.167 4.167 16 C -0.009 4.009 17 C -0.522 4.522 18 H 0.021 0.979 19 C 0.004 3.996 20 N -0.953 5.953 21 Si 0.952 3.048 22 H -0.260 1.260 23 H -0.285 1.285 24 H -0.246 1.246 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.343 0.657 33 H 0.347 0.653 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.050 0.950 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 11.406 -12.549 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C -0.095 4.095 4 C -0.162 4.162 5 C 0.029 3.971 6 H 0.112 0.888 7 C -0.197 4.197 8 N -0.368 5.368 9 C -0.103 4.103 10 C -0.235 4.235 11 C 0.065 3.935 12 O -0.231 6.231 13 C 0.039 3.961 14 H 0.075 0.925 15 C -0.224 4.224 16 C -0.047 4.047 17 C -0.560 4.560 18 H 0.040 0.960 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.185 1.185 23 H -0.211 1.211 24 H -0.169 1.169 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.952 12.063 -12.197 19.350 hybrid contribution -0.785 -1.993 0.342 2.169 sum 8.166 10.070 -11.856 17.569 Atomic orbital electron populations 1.20557 0.90531 1.02267 1.02383 1.19598 0.97112 0.90960 1.06532 1.20970 0.93872 0.96603 0.98092 1.20900 0.94123 0.96987 1.04186 1.20293 0.90742 0.91751 0.94351 0.88770 1.21794 1.01277 1.02079 0.94580 1.59097 1.17098 1.54241 1.06370 1.20864 1.00228 0.90920 0.98276 1.21429 0.92783 1.00319 1.08978 1.19379 0.91527 0.86492 0.96147 1.86157 1.37250 1.12820 1.86857 1.22443 0.93635 0.83044 0.96955 0.92497 1.22326 1.01913 1.02757 0.95418 1.19682 0.96269 0.94319 0.94384 1.21249 1.31685 1.04749 0.98353 0.96010 1.26026 0.95694 1.02581 0.94981 1.70083 1.38722 1.39275 1.11269 0.85636 0.78033 0.78830 0.80019 1.18487 1.21115 1.16934 0.90574 0.94069 0.90052 0.83368 0.90934 0.92401 0.93200 0.84329 0.83987 0.84190 0.85119 0.91433 0.89333 0.91795 0.95628 0.93151 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 9.79 71.24 0.70 -2.50 16 2 C -0.14 -4.71 5.89 -19.77 -0.12 -4.83 16 3 C -0.08 -2.03 9.32 22.25 0.21 -1.82 16 4 C -0.16 -3.78 4.95 -19.85 -0.10 -3.88 16 5 C 0.14 2.55 3.59 44.17 0.16 2.71 16 6 H 0.09 1.56 8.00 -2.39 -0.02 1.54 16 7 C -0.14 -2.53 9.47 71.98 0.68 -1.85 16 8 N -0.84 -13.31 9.05 -171.81 -1.56 -14.87 16 9 C -0.08 -2.16 9.29 22.25 0.21 -1.95 16 10 C -0.22 -6.92 8.24 22.37 0.18 -6.73 16 11 C 0.11 4.16 6.57 22.50 0.15 4.30 16 12 O -0.32 -13.77 8.60 -92.47 -0.80 -14.56 16 13 C 0.09 3.83 2.17 30.59 0.07 3.90 16 14 H 0.06 2.34 6.31 -2.39 -0.02 2.33 16 15 C -0.17 -5.01 9.17 71.98 0.66 -4.35 16 16 C -0.01 -0.44 3.75 29.85 0.11 -0.33 16 17 C -0.52 -30.95 9.43 25.60 0.24 -30.71 16 18 H 0.02 1.46 7.99 -2.91 -0.02 1.43 16 19 C 0.00 0.21 5.47 84.66 0.46 0.68 16 20 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 21 Si 0.95 44.31 27.47 68.60 1.88 46.20 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 25 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.04 1.60 7.53 -2.39 -0.02 1.59 16 27 H 0.08 2.14 8.09 -2.38 -0.02 2.12 16 28 H 0.15 3.03 8.03 -2.91 -0.02 3.01 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.34 5.01 7.33 -89.69 -0.66 4.36 16 33 H 0.35 4.97 9.06 -89.69 -0.81 4.16 16 34 H 0.14 2.75 6.65 -2.91 -0.02 2.73 16 35 H 0.13 3.99 5.43 -2.91 -0.02 3.98 16 36 H 0.07 1.81 6.91 -2.39 -0.02 1.79 16 37 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 40 H 0.05 2.18 7.57 -2.39 -0.02 2.17 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -70.50 330.21 2.95 -67.55 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.50 Total: 23.82 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 3.61 Total: -47.37 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.26 Total: -75.64 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.80 Total: -14.56 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -70.50 2.95 -67.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.693 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds