Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48509 * 109.46834 * 240.00102 * 3 2 1 5 5 H 1.48499 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47312 * 120.00659 * 3 2 1 7 7 C 1.37880 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00468 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99929 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.88297 * 303.88019 * 9 7 2 11 11 C 1.55151 * 111.00335 * 67.80286 * 9 7 2 12 12 C 1.54334 * 103.01745 * 153.38131 * 11 9 7 13 13 N 1.47021 * 107.26965 * 338.14154 * 12 11 9 14 14 C 1.34776 * 125.65398 * 178.84695 * 13 12 11 15 15 O 1.21279 * 120.00405 * 185.10494 * 14 13 12 16 16 C 1.50706 * 119.99535 * 5.10163 * 14 13 12 17 17 C 1.55933 * 115.91824 * 56.41278 * 16 14 13 18 18 C 1.54585 * 104.74206 * 160.08698 * 17 16 14 19 19 C 1.55926 * 104.64379 * 359.94098 * 18 17 16 20 20 C 1.55922 * 104.49904 * 70.28068 * 19 18 17 21 21 C 1.54803 * 104.68142 * 289.77881 * 20 19 18 22 22 C 1.56950 * 100.65148 * 326.21787 * 19 18 17 23 23 C 1.47428 * 108.69976 * 358.58836 * 13 12 11 24 24 H 0.96998 * 120.00015 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.72338 * 271.94418 * 11 9 7 26 26 H 1.09001 * 110.71822 * 35.03794 * 11 9 7 27 27 H 1.09004 * 109.98938 * 218.66641 * 12 11 9 28 28 H 1.09000 * 109.77716 * 97.49866 * 12 11 9 29 29 H 1.08992 * 110.40348 * 41.23820 * 17 16 14 30 30 H 1.09003 * 110.40058 * 278.93729 * 17 16 14 31 31 H 1.08995 * 110.39911 * 118.73287 * 18 17 16 32 32 H 1.08997 * 110.39896 * 241.14372 * 18 17 16 33 33 H 1.09003 * 115.91533 * 199.96672 * 19 18 17 34 34 H 1.08993 * 110.40607 * 48.50995 * 20 19 18 35 35 H 1.08999 * 110.40421 * 170.93245 * 20 19 18 36 36 H 1.09000 * 110.46252 * 241.14966 * 21 20 19 37 37 H 1.08995 * 110.46211 * 118.76732 * 21 20 19 38 38 H 1.08996 * 112.02292 * 170.30333 * 22 19 18 39 39 H 1.08996 * 112.03057 * 296.82682 * 22 19 18 40 40 H 1.09004 * 110.36979 * 143.19538 * 23 13 12 41 41 H 1.09011 * 110.36370 * 265.51487 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5653 -2.5520 0.8452 11 6 0.4985 -2.7069 -1.3414 12 6 0.4003 -4.2433 -1.4506 13 7 1.4584 -4.8097 -0.6014 14 6 1.6920 -6.1229 -0.4083 15 8 2.5353 -6.4783 0.3876 16 6 0.9052 -7.1498 -1.1815 17 6 0.9663 -7.0274 -2.7348 18 6 0.5461 -8.4207 -3.2560 19 6 0.2714 -9.2567 -1.9688 20 6 -1.0361 -8.6461 -1.3783 21 6 -0.6166 -7.2500 -0.8574 22 6 1.3414 -8.6491 -0.9944 23 6 2.2257 -3.7032 -0.0010 24 1 -0.4850 0.8400 0.0004 25 1 -0.4933 -2.2566 -1.3008 26 1 1.0724 -2.2980 -2.1730 27 1 0.5491 -4.5536 -2.4849 28 1 -0.5759 -4.5764 -1.0982 29 1 1.9801 -6.7907 -3.0577 30 1 0.2696 -6.2651 -3.0836 31 1 -0.3583 -8.3438 -3.8593 32 1 1.3533 -8.8690 -3.8353 33 1 0.2911 -10.3397 -2.0909 34 1 -1.7944 -8.5483 -2.1551 35 1 -1.4071 -9.2621 -0.5592 36 1 -0.7816 -7.1790 0.2177 37 1 -1.1684 -6.4674 -1.3781 38 1 1.2007 -8.9904 0.0312 39 1 2.3589 -8.8255 -1.3431 40 1 2.5191 -3.9542 1.0183 41 1 3.1048 -3.4793 -0.6055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710863942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -43.865919 kcal Electronic energy + Delta-G solvation = -20696.942361 eV Core-core repulsion = 17768.792563 eV Total energy + Delta-G solvation = -2928.149797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71016 -38.52456 -36.59290 -33.04427 -30.78534 -30.54441 -29.36287 -28.28062 -27.67903 -24.98659 -22.84130 -22.25635 -20.62002 -19.68288 -19.38573 -18.37533 -16.71379 -16.40303 -15.43471 -15.39061 -15.03740 -14.75663 -14.56442 -13.66608 -13.11940 -12.72879 -12.64592 -12.55978 -12.31318 -11.84489 -11.76211 -11.59241 -11.33125 -11.20362 -11.09423 -11.02487 -10.99623 -10.85625 -10.71595 -10.50266 -10.27319 -9.98662 -9.78743 -9.47635 -9.22500 -8.99889 -8.47634 -7.95315 -6.11499 -4.14948 3.01161 3.28633 3.33313 3.35877 3.57307 4.33041 4.37789 4.41643 4.47851 4.99421 5.08129 5.12258 5.22347 5.24662 5.33602 5.35998 5.38978 5.62797 5.67871 5.76349 5.79041 5.88111 5.95019 5.95601 6.00792 6.08743 6.10552 6.18260 6.20238 6.25026 6.33675 6.41899 6.62963 6.83921 6.98882 7.11489 7.43639 7.69913 7.88159 8.16825 8.28672 8.67194 8.87112 9.50058 10.98694 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041511 B = 0.004599 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.360894 B = 6086.722043 C = 6312.606471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.047 3.953 10 H 0.042 0.958 11 C -0.114 4.114 12 C 0.094 3.906 13 N -0.607 5.607 14 C 0.551 3.449 15 O -0.554 6.554 16 C -0.097 4.097 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.108 4.108 22 C -0.095 4.095 23 C 0.106 3.894 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -14.961 -6.612 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.028 3.972 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.029 4.029 13 N -0.339 5.339 14 C 0.339 3.661 15 O -0.433 6.433 16 C -0.100 4.100 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.133 4.133 23 C -0.015 4.015 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.896 -15.071 -6.190 16.548 hybrid contribution 0.353 1.081 -0.090 1.141 sum -2.543 -13.990 -6.280 15.544 Atomic orbital electron populations 1.69932 1.05946 1.26897 1.49875 1.24947 0.94859 0.99130 0.94685 0.86623 0.79586 0.82860 0.78748 1.20187 1.21275 1.20166 1.20921 0.92937 0.89847 1.51713 0.92281 1.19819 0.92761 0.91018 0.93619 0.94016 1.22660 1.02565 0.89111 1.00910 1.22386 0.89865 0.97448 0.93202 1.48659 1.33152 1.04891 1.47170 1.19321 0.83007 0.81580 0.82230 1.90647 1.35703 1.80248 1.36693 1.22904 0.96154 0.95003 0.95922 1.22645 1.01935 0.97576 0.92686 1.22613 1.01018 0.95033 0.96853 1.23577 0.95314 0.98379 0.95262 1.22626 0.96887 0.95729 1.00141 1.22607 0.92986 0.97529 1.01430 1.23384 0.98435 0.91975 0.99501 1.22610 0.95614 0.86139 0.97141 0.92813 0.90290 0.92170 0.92643 0.92541 0.91647 0.90756 0.91539 0.91803 0.88252 0.91533 0.91736 0.91527 0.90876 0.90832 0.90994 0.92004 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 12.62 55.43 0.70 -23.77 16 2 C 0.07 1.77 5.37 -17.82 -0.10 1.67 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.64 8.49 -34.44 -0.29 -13.94 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.13 2.85 -89.62 -0.26 0.88 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.43 5.90 -24.89 -0.15 -2.58 16 12 C 0.09 1.65 5.70 -3.06 -0.02 1.63 16 13 N -0.61 -11.83 3.33 -170.50 -0.57 -12.40 16 14 C 0.55 10.44 7.27 -10.98 -0.08 10.36 16 15 O -0.55 -12.34 16.76 5.56 0.09 -12.25 16 16 C -0.10 -1.38 0.91 -150.21 -0.14 -1.52 16 17 C -0.11 -1.35 4.98 -24.33 -0.12 -1.47 16 18 C -0.12 -1.14 6.21 -24.33 -0.15 -1.29 16 19 C -0.11 -1.04 5.19 -85.36 -0.44 -1.49 16 20 C -0.12 -1.14 6.21 -24.22 -0.15 -1.29 16 21 C -0.11 -1.34 5.33 -24.22 -0.13 -1.47 16 22 C -0.10 -1.21 5.69 -22.27 -0.13 -1.34 16 23 C 0.11 2.33 6.37 -2.53 -0.02 2.32 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.08 1.78 7.84 -51.93 -0.41 1.37 16 26 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 27 H 0.06 0.86 5.97 -51.93 -0.31 0.55 16 28 H 0.06 0.92 6.60 -51.93 -0.34 0.58 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.87 6.01 -51.93 -0.31 0.56 16 31 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.88 6.43 -51.93 -0.33 0.54 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.40 7.99 -51.93 -0.41 0.99 16 41 H 0.06 1.29 8.01 -51.92 -0.42 0.87 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -28.97 313.78 -8.92 -37.89 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.69 Total: -0.32 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.16 Total: -9.53 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.13 Total: -36.17 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.97 -8.92 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710863942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.981 kcal (2) G-P(sol) polarization free energy of solvation -28.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds