Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48509 * 109.46834 * 240.00102 * 3 2 1 5 5 H 1.48499 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47312 * 120.00659 * 3 2 1 7 7 C 1.37880 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00468 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99929 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.88297 * 303.88019 * 9 7 2 11 11 C 1.55151 * 111.00335 * 67.80286 * 9 7 2 12 12 C 1.54334 * 103.01745 * 153.38131 * 11 9 7 13 13 N 1.47021 * 107.26965 * 338.14154 * 12 11 9 14 14 C 1.34776 * 125.65398 * 178.84695 * 13 12 11 15 15 O 1.21279 * 120.00405 * 185.10494 * 14 13 12 16 16 C 1.50706 * 119.99535 * 5.10163 * 14 13 12 17 17 C 1.55933 * 115.91824 * 56.41278 * 16 14 13 18 18 C 1.54585 * 104.74206 * 160.08698 * 17 16 14 19 19 C 1.55926 * 104.64379 * 359.94098 * 18 17 16 20 20 C 1.55922 * 104.49904 * 70.28068 * 19 18 17 21 21 C 1.54803 * 104.68142 * 289.77881 * 20 19 18 22 22 C 1.56950 * 100.65148 * 326.21787 * 19 18 17 23 23 C 1.47428 * 108.69976 * 358.58836 * 13 12 11 24 24 H 0.96998 * 120.00015 * 359.97438 * 1 2 3 25 25 H 1.08995 * 110.72338 * 271.94418 * 11 9 7 26 26 H 1.09001 * 110.71822 * 35.03794 * 11 9 7 27 27 H 1.09004 * 109.98938 * 218.66641 * 12 11 9 28 28 H 1.09000 * 109.77716 * 97.49866 * 12 11 9 29 29 H 1.08992 * 110.40348 * 41.23820 * 17 16 14 30 30 H 1.09003 * 110.40058 * 278.93729 * 17 16 14 31 31 H 1.08995 * 110.39911 * 118.73287 * 18 17 16 32 32 H 1.08997 * 110.39896 * 241.14372 * 18 17 16 33 33 H 1.09003 * 115.91533 * 199.96672 * 19 18 17 34 34 H 1.08993 * 110.40607 * 48.50995 * 20 19 18 35 35 H 1.08999 * 110.40421 * 170.93245 * 20 19 18 36 36 H 1.09000 * 110.46252 * 241.14966 * 21 20 19 37 37 H 1.08995 * 110.46211 * 118.76732 * 21 20 19 38 38 H 1.08996 * 112.02292 * 170.30333 * 22 19 18 39 39 H 1.08996 * 112.03057 * 296.82682 * 22 19 18 40 40 H 1.09004 * 110.36979 * 143.19538 * 23 13 12 41 41 H 1.09011 * 110.36370 * 265.51487 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5653 -2.5520 0.8452 11 6 0.4985 -2.7069 -1.3414 12 6 0.4003 -4.2433 -1.4506 13 7 1.4584 -4.8097 -0.6014 14 6 1.6920 -6.1229 -0.4083 15 8 2.5353 -6.4783 0.3876 16 6 0.9052 -7.1498 -1.1815 17 6 0.9663 -7.0274 -2.7348 18 6 0.5461 -8.4207 -3.2560 19 6 0.2714 -9.2567 -1.9688 20 6 -1.0361 -8.6461 -1.3783 21 6 -0.6166 -7.2500 -0.8574 22 6 1.3414 -8.6491 -0.9944 23 6 2.2257 -3.7032 -0.0010 24 1 -0.4850 0.8400 0.0004 25 1 -0.4933 -2.2566 -1.3008 26 1 1.0724 -2.2980 -2.1730 27 1 0.5491 -4.5536 -2.4849 28 1 -0.5759 -4.5764 -1.0982 29 1 1.9801 -6.7907 -3.0577 30 1 0.2696 -6.2651 -3.0836 31 1 -0.3583 -8.3438 -3.8593 32 1 1.3533 -8.8690 -3.8353 33 1 0.2911 -10.3397 -2.0909 34 1 -1.7944 -8.5483 -2.1551 35 1 -1.4071 -9.2621 -0.5592 36 1 -0.7816 -7.1790 0.2177 37 1 -1.1684 -6.4674 -1.3781 38 1 1.2007 -8.9904 0.0312 39 1 2.3589 -8.8255 -1.3431 40 1 2.5191 -3.9542 1.0183 41 1 3.1048 -3.4793 -0.6055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710863942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = -59.499698 kcal Electronic energy + Delta-G solvation = -20697.620292 eV Core-core repulsion = 17768.792563 eV Total energy + Delta-G solvation = -2928.827729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.86093 -39.93160 -38.27905 -34.99056 -32.44842 -31.39221 -30.67046 -29.87123 -28.65588 -26.87258 -24.45535 -23.10098 -22.03761 -21.47054 -20.27510 -19.75505 -18.52658 -17.76112 -16.97256 -16.66590 -16.46098 -16.19674 -15.87588 -15.21382 -14.49448 -14.43016 -14.18673 -13.53550 -13.49072 -13.44273 -13.13410 -13.02959 -12.92912 -12.72455 -12.57975 -12.32660 -12.12974 -12.00406 -11.91120 -11.79337 -11.58564 -11.35067 -11.20451 -10.98605 -10.84484 -10.75285 -10.51414 -9.58290 -8.17230 -6.27162 1.43974 1.44846 1.52248 1.53703 2.05754 2.43840 3.14719 3.31929 3.46378 3.54951 3.80479 4.02662 4.21434 4.24287 4.29279 4.30173 4.37574 4.44359 4.52514 4.55367 4.57346 4.59694 4.75981 4.77863 4.82712 5.01297 5.05330 5.08163 5.15715 5.19565 5.22945 5.25300 5.34037 5.36114 5.40073 5.49045 5.54146 5.73531 5.84348 6.25373 6.63542 6.78885 7.12971 7.40824 8.92472 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041511 B = 0.004599 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.360894 B = 6086.722043 C = 6312.606471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.042 3.958 10 H 0.009 0.991 11 C -0.104 4.104 12 C 0.105 3.895 13 N -0.611 5.611 14 C 0.544 3.456 15 O -0.596 6.596 16 C -0.107 4.107 17 C -0.109 4.109 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.101 4.101 23 C 0.115 3.885 24 H 0.264 0.736 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -16.285 -8.665 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.073 0.927 9 C 0.023 3.977 10 H 0.027 0.973 11 C -0.143 4.143 12 C -0.016 4.016 13 N -0.342 5.342 14 C 0.335 3.665 15 O -0.478 6.478 16 C -0.110 4.110 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.109 4.109 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.007 4.007 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.906 -16.407 -8.260 18.780 hybrid contribution 0.703 1.503 0.632 1.775 sum -3.203 -14.904 -7.629 17.046 Atomic orbital electron populations 1.70033 1.07105 1.27682 1.50395 1.25660 0.95664 1.02179 0.94274 0.85649 0.78427 0.78972 0.78836 1.19399 1.20744 1.20058 1.21223 0.93017 0.91222 1.52019 0.92711 1.19703 0.92822 0.91213 0.93996 0.97258 1.22439 1.01058 0.91938 0.98838 1.22363 0.90091 0.94486 0.94692 1.48724 1.33299 1.04862 1.47317 1.20269 0.82702 0.81777 0.81790 1.90614 1.37713 1.80794 1.38637 1.22920 0.96890 0.94174 0.97020 1.22678 1.01623 0.99829 0.90545 1.22619 1.02333 0.92981 0.96927 1.23618 0.93537 0.99733 0.94004 1.22633 0.97365 0.93724 1.01021 1.22652 0.91341 0.99875 1.00665 1.23446 0.99275 0.91245 0.99925 1.22291 0.95412 0.86572 0.96457 0.92711 0.91640 0.92706 0.89469 0.90786 0.92859 0.90002 0.89371 0.90828 0.85656 0.89322 0.90965 0.93273 0.90195 0.92045 0.91848 0.93758 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 12.62 21.45 0.27 -50.70 16 2 C 0.02 1.20 5.37 84.66 0.45 1.66 16 3 Si 0.96 42.57 29.54 68.60 2.03 44.59 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -29.08 8.49 25.60 0.22 -28.87 16 8 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 9 C 0.04 2.09 2.85 -10.15 -0.03 2.06 16 10 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 11 C -0.10 -4.48 5.90 31.78 0.19 -4.29 16 12 C 0.11 3.60 5.70 86.73 0.49 4.09 16 13 N -0.61 -24.02 3.33 -811.74 -2.70 -26.72 16 14 C 0.54 20.85 7.27 87.66 0.64 21.49 16 15 O -0.60 -27.48 16.76 -3.03 -0.05 -27.53 16 16 C -0.11 -2.93 0.91 -49.40 -0.04 -2.97 16 17 C -0.11 -2.36 4.98 32.15 0.16 -2.20 16 18 C -0.11 -1.69 6.21 32.15 0.20 -1.49 16 19 C -0.09 -1.42 5.19 -7.38 -0.04 -1.46 16 20 C -0.11 -1.74 6.21 32.22 0.20 -1.54 16 21 C -0.11 -2.44 5.33 32.22 0.17 -2.27 16 22 C -0.10 -2.43 5.69 33.48 0.19 -2.24 16 23 C 0.12 5.25 6.37 86.85 0.55 5.81 16 24 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.06 2.98 7.84 -2.39 -0.02 2.96 16 26 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 27 H 0.09 2.47 5.97 -2.38 -0.01 2.45 16 28 H 0.07 2.30 6.60 -2.39 -0.02 2.28 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.63 6.01 -2.39 -0.01 1.62 16 31 H 0.09 1.04 7.83 -2.39 -0.02 1.02 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.08 7.83 -2.39 -0.02 1.07 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.68 6.43 -2.39 -0.02 1.67 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 2.13 7.99 -2.39 -0.02 2.11 16 41 H 0.06 2.56 8.01 -2.38 -0.02 2.54 16 Total: -1.00 -64.53 313.78 3.90 -60.63 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.00 Total: 11.97 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 3.35 Total: -12.24 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.43 Total: -77.43 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.53 3.90 -60.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710863942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.135 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds