Wall clock time and date at job start Mon Mar 30 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48501 * 109.46946 * 269.99749 * 3 2 1 5 5 H 1.48498 * 109.47213 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.46973 * 150.00399 * 3 2 1 7 7 C 1.37882 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00357 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99643 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.91895 * 56.09474 * 9 7 2 11 11 C 1.55154 * 111.00498 * 292.19109 * 9 7 2 12 12 C 1.54322 * 102.94204 * 206.42365 * 11 9 7 13 13 N 1.47019 * 107.27223 * 22.19795 * 12 11 9 14 14 C 1.34775 * 125.65013 * 181.03860 * 13 12 11 15 15 O 1.21285 * 120.00015 * 180.02562 * 14 13 12 16 16 C 1.50694 * 120.00038 * 0.02562 * 14 13 12 17 17 C 1.55930 * 115.92275 * 297.94031 * 16 14 13 18 18 C 1.54580 * 104.64661 * 199.96804 * 17 16 14 19 19 C 1.55931 * 104.64275 * 359.97438 * 18 17 16 20 20 C 1.55929 * 104.49771 * 289.72304 * 19 18 17 21 21 C 1.55699 * 104.74189 * 70.92556 * 20 19 18 22 22 C 1.56951 * 116.22722 * 180.02562 * 16 14 13 23 23 C 1.47426 * 108.70209 * 1.05519 * 13 12 11 24 24 H 0.97004 * 119.99757 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.71557 * 88.06460 * 11 9 7 26 26 H 1.09002 * 110.72203 * 324.78982 * 11 9 7 27 27 H 1.09001 * 109.88768 * 262.77536 * 12 11 9 28 28 H 1.09003 * 109.87844 * 141.61039 * 12 11 9 29 29 H 1.09006 * 110.40168 * 318.75682 * 17 16 14 30 30 H 1.08997 * 110.40424 * 81.17554 * 17 16 14 31 31 H 1.08997 * 110.40311 * 241.21022 * 18 17 16 32 32 H 1.09004 * 110.50142 * 118.83831 * 18 17 16 33 33 H 1.08997 * 115.92278 * 160.03290 * 19 18 17 34 34 H 1.09000 * 110.39852 * 189.06890 * 20 19 18 35 35 H 1.08998 * 110.39854 * 311.37254 * 20 19 18 36 36 H 1.09002 * 109.84864 * 240.79957 * 21 20 19 37 37 H 1.09002 * 111.46200 * 118.05319 * 21 20 19 38 38 H 1.09002 * 112.02487 * 296.35369 * 22 16 14 39 39 H 1.08995 * 112.02815 * 62.87437 * 22 16 14 40 40 H 1.08998 * 110.36718 * 94.71247 * 23 13 12 41 41 H 1.09005 * 110.36600 * 217.03808 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.9010 -0.6264 0.8439 11 6 4.0671 -0.6468 -1.3424 12 6 5.4483 -1.3270 -1.4476 13 7 5.4083 -2.5293 -0.6025 14 6 6.4290 -3.3881 -0.4094 15 8 6.2824 -4.3518 0.3122 16 6 7.7523 -3.1508 -1.0900 17 6 7.7301 -3.1696 -2.6490 18 6 9.1993 -3.4222 -3.0579 19 6 9.9710 -3.5316 -1.7074 20 6 9.9648 -2.0809 -1.1356 21 6 8.4890 -1.8302 -0.7075 22 6 8.8786 -4.2058 -0.8037 23 6 4.0667 -2.6403 -0.0016 24 1 -0.4850 0.8401 0.0004 25 1 4.1732 0.4373 -1.3020 26 1 3.4274 -0.9421 -2.1741 27 1 6.2237 -0.6489 -1.0910 28 1 5.6455 -1.6075 -2.4823 29 1 7.0912 -3.9756 -3.0103 30 1 7.3878 -2.2098 -3.0358 31 1 9.5793 -2.5866 -3.6456 32 1 9.2845 -4.3517 -3.6210 33 1 10.9374 -4.0339 -1.7501 34 1 10.6184 -2.0125 -0.2660 35 1 10.2758 -1.3697 -1.9007 36 1 8.0788 -0.9899 -1.2677 37 1 8.4101 -1.6479 0.3643 38 1 9.1688 -4.2190 0.2469 39 1 8.6083 -5.1994 -1.1608 40 1 3.4330 -3.2897 -0.6056 41 1 4.1378 -3.0197 1.0178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710863944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:57 Heat of formation + Delta-G solvation = -38.048960 kcal Electronic energy + Delta-G solvation = -20796.358779 eV Core-core repulsion = 17868.461224 eV Total energy + Delta-G solvation = -2927.897555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80289 -38.68639 -36.81039 -33.02720 -31.16511 -30.60484 -29.64319 -28.52716 -27.74939 -25.18908 -22.80560 -22.37445 -20.86566 -19.66707 -19.47307 -18.52414 -17.01103 -16.64650 -15.61177 -15.52328 -15.12013 -15.00151 -14.31043 -13.83067 -13.35121 -12.95648 -12.74240 -12.71382 -12.50384 -12.13570 -11.98332 -11.86279 -11.66895 -11.33249 -11.15966 -11.10587 -10.99077 -10.92155 -10.75770 -10.40042 -10.20606 -10.08653 -9.94643 -9.69566 -9.36188 -9.18064 -8.64555 -8.12308 -6.15942 -4.16887 2.90304 3.20183 3.30419 3.31182 3.42072 4.24029 4.31896 4.33228 4.40134 4.86833 4.97574 5.02473 5.12977 5.16258 5.24328 5.28264 5.29919 5.35205 5.54300 5.56651 5.70191 5.70879 5.80089 5.82979 5.88892 5.92781 5.97763 6.09134 6.09663 6.12017 6.17286 6.21874 6.41812 6.54929 6.66167 6.73342 6.90056 7.32418 7.62587 8.00289 8.41520 8.54551 8.87283 9.44931 10.96874 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.005214 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.133321 B = 5368.577141 C = 5710.855021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.008 3.992 10 H 0.042 0.958 11 C -0.141 4.141 12 C 0.098 3.902 13 N -0.609 5.609 14 C 0.552 3.448 15 O -0.549 6.549 16 C -0.098 4.098 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.095 4.095 23 C 0.118 3.882 24 H 0.265 0.735 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.700 -2.237 -6.103 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.096 0.904 9 C -0.011 4.011 10 H 0.060 0.940 11 C -0.179 4.179 12 C -0.025 4.025 13 N -0.342 5.342 14 C 0.339 3.661 15 O -0.427 6.427 16 C -0.101 4.101 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.147 4.147 22 C -0.133 4.133 23 C -0.003 4.003 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.492 -2.667 -5.718 20.488 hybrid contribution 0.235 1.113 -0.117 1.143 sum 19.727 -1.555 -5.835 20.630 Atomic orbital electron populations 1.69891 1.06283 1.27099 1.50146 1.24951 0.94640 0.98938 0.94201 0.86919 0.80301 0.83771 0.78499 1.20130 1.21726 1.18896 1.20814 0.87805 0.94819 1.51528 0.90432 1.20361 0.97040 0.90966 0.92745 0.93980 1.23100 0.93545 0.98819 1.02429 1.22245 0.99737 0.86629 0.93882 1.48644 1.13010 1.25160 1.47368 1.19353 0.83707 0.81825 0.81181 1.90667 1.83137 1.29634 1.39302 1.22881 0.92681 0.98092 0.96445 1.22600 0.97085 1.02313 0.92665 1.22611 0.94664 1.01505 0.96742 1.23584 0.97888 0.95855 0.95180 1.22780 0.96017 0.96235 1.00389 1.22817 0.94794 0.95657 1.01458 1.23347 0.92816 0.97305 0.99821 1.22395 0.80339 0.99822 0.97726 0.92484 0.92103 0.90272 0.92206 0.92108 0.91474 0.90903 0.91544 0.91707 0.88176 0.91807 0.91443 0.90981 0.91305 0.90843 0.90828 0.91564 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 20.59 24.95 -169.99 -4.24 16.35 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -5.93 6.44 56.52 0.36 -5.56 16 7 C -0.51 -13.77 9.08 -34.44 -0.31 -14.08 16 8 H 0.08 2.27 8.01 -52.49 -0.42 1.85 16 9 C 0.01 0.19 2.39 -89.62 -0.21 -0.02 16 10 H 0.04 0.98 6.99 -51.93 -0.36 0.61 16 11 C -0.14 -2.72 5.41 -24.90 -0.13 -2.86 16 12 C 0.10 1.57 5.68 -3.07 -0.02 1.56 16 13 N -0.61 -11.15 3.33 -170.52 -0.57 -11.72 16 14 C 0.55 9.87 7.25 -10.99 -0.08 9.79 16 15 O -0.55 -11.72 16.76 5.55 0.09 -11.63 16 16 C -0.10 -1.31 0.88 -150.36 -0.13 -1.44 16 17 C -0.11 -1.23 5.16 -24.34 -0.13 -1.35 16 18 C -0.12 -1.06 6.21 -24.33 -0.15 -1.21 16 19 C -0.11 -0.97 5.19 -85.33 -0.44 -1.41 16 20 C -0.12 -1.06 6.24 -23.73 -0.15 -1.21 16 21 C -0.11 -1.26 5.23 -23.70 -0.12 -1.38 16 22 C -0.10 -1.14 5.65 -22.43 -0.13 -1.27 16 23 C 0.12 2.48 6.35 -2.53 -0.02 2.46 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.06 1.16 5.72 -51.93 -0.30 0.86 16 26 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 27 H 0.06 0.86 6.17 -51.93 -0.32 0.54 16 28 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.78 6.24 -51.93 -0.32 0.45 16 31 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 36 H 0.07 0.79 6.20 -51.93 -0.32 0.46 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.42 8.01 -51.93 -0.42 1.01 16 41 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -30.36 306.53 -8.02 -38.37 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.57 Total: 0.27 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.12 Total: -10.45 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.21 Total: -37.53 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.24 Total: 16.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.36 -8.02 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710863944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.323 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds