Wall clock time and date at job start Mon Mar 30 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48501 * 109.46946 * 269.99749 * 3 2 1 5 5 H 1.48498 * 109.47213 * 30.00237 * 3 2 1 6 6 H 1.48497 * 109.46973 * 150.00399 * 3 2 1 7 7 C 1.37882 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00357 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99643 * 179.97438 * 7 2 1 10 10 H 1.08999 * 110.91895 * 56.09474 * 9 7 2 11 11 C 1.55154 * 111.00498 * 292.19109 * 9 7 2 12 12 C 1.54322 * 102.94204 * 206.42365 * 11 9 7 13 13 N 1.47019 * 107.27223 * 22.19795 * 12 11 9 14 14 C 1.34775 * 125.65013 * 181.03860 * 13 12 11 15 15 O 1.21285 * 120.00015 * 180.02562 * 14 13 12 16 16 C 1.50694 * 120.00038 * 0.02562 * 14 13 12 17 17 C 1.55930 * 115.92275 * 297.94031 * 16 14 13 18 18 C 1.54580 * 104.64661 * 199.96804 * 17 16 14 19 19 C 1.55931 * 104.64275 * 359.97438 * 18 17 16 20 20 C 1.55929 * 104.49771 * 289.72304 * 19 18 17 21 21 C 1.55699 * 104.74189 * 70.92556 * 20 19 18 22 22 C 1.56951 * 116.22722 * 180.02562 * 16 14 13 23 23 C 1.47426 * 108.70209 * 1.05519 * 13 12 11 24 24 H 0.97004 * 119.99757 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.71557 * 88.06460 * 11 9 7 26 26 H 1.09002 * 110.72203 * 324.78982 * 11 9 7 27 27 H 1.09001 * 109.88768 * 262.77536 * 12 11 9 28 28 H 1.09003 * 109.87844 * 141.61039 * 12 11 9 29 29 H 1.09006 * 110.40168 * 318.75682 * 17 16 14 30 30 H 1.08997 * 110.40424 * 81.17554 * 17 16 14 31 31 H 1.08997 * 110.40311 * 241.21022 * 18 17 16 32 32 H 1.09004 * 110.50142 * 118.83831 * 18 17 16 33 33 H 1.08997 * 115.92278 * 160.03290 * 19 18 17 34 34 H 1.09000 * 110.39852 * 189.06890 * 20 19 18 35 35 H 1.08998 * 110.39854 * 311.37254 * 20 19 18 36 36 H 1.09002 * 109.84864 * 240.79957 * 21 20 19 37 37 H 1.09002 * 111.46200 * 118.05319 * 21 20 19 38 38 H 1.09002 * 112.02487 * 296.35369 * 22 16 14 39 39 H 1.08995 * 112.02815 * 62.87437 * 22 16 14 40 40 H 1.08998 * 110.36718 * 94.71247 * 23 13 12 41 41 H 1.09005 * 110.36600 * 217.03808 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.9010 -0.6264 0.8439 11 6 4.0671 -0.6468 -1.3424 12 6 5.4483 -1.3270 -1.4476 13 7 5.4083 -2.5293 -0.6025 14 6 6.4290 -3.3881 -0.4094 15 8 6.2824 -4.3518 0.3122 16 6 7.7523 -3.1508 -1.0900 17 6 7.7301 -3.1696 -2.6490 18 6 9.1993 -3.4222 -3.0579 19 6 9.9710 -3.5316 -1.7074 20 6 9.9648 -2.0809 -1.1356 21 6 8.4890 -1.8302 -0.7075 22 6 8.8786 -4.2058 -0.8037 23 6 4.0667 -2.6403 -0.0016 24 1 -0.4850 0.8401 0.0004 25 1 4.1732 0.4373 -1.3020 26 1 3.4274 -0.9421 -2.1741 27 1 6.2237 -0.6489 -1.0910 28 1 5.6455 -1.6075 -2.4823 29 1 7.0912 -3.9756 -3.0103 30 1 7.3878 -2.2098 -3.0358 31 1 9.5793 -2.5866 -3.6456 32 1 9.2845 -4.3517 -3.6210 33 1 10.9374 -4.0339 -1.7501 34 1 10.6184 -2.0125 -0.2660 35 1 10.2758 -1.3697 -1.9007 36 1 8.0788 -0.9899 -1.2677 37 1 8.4101 -1.6479 0.3643 38 1 9.1688 -4.2190 0.2469 39 1 8.6083 -5.1994 -1.1608 40 1 3.4330 -3.2897 -0.6056 41 1 4.1378 -3.0197 1.0178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710863944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:57 Heat of formation + Delta-G solvation = -56.724074 kcal Electronic energy + Delta-G solvation = -20797.168593 eV Core-core repulsion = 17868.461224 eV Total energy + Delta-G solvation = -2928.707369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.87986 -39.98622 -38.38158 -34.98682 -32.87350 -31.36230 -30.79130 -30.02053 -28.63847 -27.00401 -24.35633 -23.12950 -22.17173 -21.39637 -20.28171 -19.81746 -18.92513 -17.80121 -17.08411 -16.75431 -16.33490 -16.17423 -15.85445 -15.29184 -14.85773 -14.52621 -14.30308 -13.79281 -13.56313 -13.52126 -13.29233 -13.14045 -12.87423 -12.70606 -12.54016 -12.14472 -12.01733 -11.99479 -11.88868 -11.79673 -11.61159 -11.53066 -11.23186 -11.15256 -10.86162 -10.78701 -10.72285 -9.63750 -8.30216 -6.37244 1.34778 1.40210 1.49866 1.52753 2.00656 2.35047 3.03382 3.30082 3.44472 3.55166 3.75410 3.85214 4.13165 4.16336 4.22180 4.26433 4.32440 4.36443 4.49051 4.52328 4.56722 4.59040 4.65580 4.73992 4.81930 4.88379 5.01311 5.06274 5.10820 5.12942 5.15284 5.18530 5.25137 5.25730 5.35655 5.40231 5.46806 5.51476 5.64456 6.24825 6.58758 6.67939 7.10756 7.28659 8.86446 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.005214 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.133321 B = 5368.577141 C = 5710.855021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.251 1.251 5 H -0.295 1.295 6 H -0.243 1.243 7 C -0.520 4.520 8 H 0.031 0.969 9 C 0.007 3.993 10 H 0.041 0.959 11 C -0.136 4.136 12 C 0.104 3.896 13 N -0.611 5.611 14 C 0.545 3.455 15 O -0.595 6.595 16 C -0.106 4.106 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.103 4.103 23 C 0.124 3.876 24 H 0.268 0.732 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.634 -0.078 -8.014 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.176 1.176 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.049 0.951 9 C -0.012 4.012 10 H 0.059 0.941 11 C -0.174 4.174 12 C -0.018 4.018 13 N -0.343 5.343 14 C 0.335 3.665 15 O -0.476 6.476 16 C -0.109 4.109 17 C -0.145 4.145 18 C -0.149 4.149 19 C -0.110 4.110 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.141 4.141 23 C 0.001 3.999 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 23.460 -0.511 -7.653 24.682 hybrid contribution -1.101 0.285 0.548 1.263 sum 22.358 -0.226 -7.105 23.461 Atomic orbital electron populations 1.70055 1.08459 1.28313 1.52015 1.25872 0.95393 1.03185 0.93611 0.85855 0.79434 0.78076 0.79914 1.17581 1.22202 1.16656 1.21021 0.90360 0.93241 1.51183 0.95089 1.20211 0.94090 0.92090 0.94838 0.94106 1.22967 0.95124 0.99823 0.99529 1.22372 0.98348 0.85781 0.95297 1.48698 1.11850 1.26243 1.47526 1.20306 0.84951 0.80725 0.80494 1.90635 1.84080 1.31516 1.41393 1.22894 0.90122 1.00093 0.97804 1.22645 0.98887 1.02503 0.90485 1.22618 0.92631 1.02837 0.96831 1.23621 0.97747 0.95509 0.94157 1.22785 0.94103 0.96511 1.01352 1.22863 0.96382 0.94581 1.00825 1.23411 0.93869 0.96808 0.99980 1.22062 0.82169 0.98787 0.96839 0.92348 0.90674 0.91109 0.89306 0.89118 0.92971 0.89597 0.89257 0.91084 0.85917 0.91180 0.89143 0.89690 0.92796 0.92069 0.92086 0.93228 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 2 C 0.02 0.96 5.47 84.66 0.46 1.42 16 3 Si 0.94 41.58 24.95 68.60 1.71 43.29 16 4 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.24 -9.81 6.44 99.48 0.64 -9.17 16 7 C -0.52 -29.09 9.08 25.60 0.23 -28.86 16 8 H 0.03 1.95 8.01 -2.91 -0.02 1.93 16 9 C 0.01 0.33 2.39 -10.15 -0.02 0.30 16 10 H 0.04 1.86 6.99 -2.39 -0.02 1.84 16 11 C -0.14 -4.97 5.41 31.78 0.17 -4.80 16 12 C 0.10 3.00 5.68 86.73 0.49 3.49 16 13 N -0.61 -21.98 3.33 -811.80 -2.70 -24.68 16 14 C 0.54 19.43 7.25 87.66 0.64 20.06 16 15 O -0.59 -26.32 16.76 -3.04 -0.05 -26.37 16 16 C -0.11 -2.63 0.88 -49.50 -0.04 -2.68 16 17 C -0.11 -2.08 5.16 32.15 0.17 -1.91 16 18 C -0.11 -1.51 6.21 32.15 0.20 -1.31 16 19 C -0.09 -1.30 5.19 -7.37 -0.04 -1.34 16 20 C -0.11 -1.49 6.24 32.54 0.20 -1.29 16 21 C -0.11 -2.12 5.23 32.56 0.17 -1.95 16 22 C -0.10 -2.32 5.65 33.38 0.19 -2.13 16 23 C 0.12 5.39 6.35 86.86 0.55 5.94 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.07 2.54 5.72 -2.39 -0.01 2.53 16 26 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 27 H 0.09 2.12 6.17 -2.39 -0.01 2.11 16 28 H 0.09 2.14 6.33 -2.39 -0.02 2.13 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.09 1.42 6.24 -2.39 -0.01 1.41 16 31 H 0.09 0.88 7.83 -2.39 -0.02 0.86 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.89 7.84 -2.39 -0.02 0.87 16 36 H 0.08 1.42 6.20 -2.39 -0.01 1.41 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 2.27 8.01 -2.39 -0.02 2.26 16 41 H 0.05 2.28 8.04 -2.38 -0.02 2.26 16 Total: -1.00 -70.24 306.53 3.57 -66.68 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.94 Total: 14.02 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 3.37 Total: -15.05 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.40 Total: -82.58 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.71 Total: 43.29 kcal Total: -70.24 3.57 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710863944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.954 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds