Wall clock time and date at job start Mon Mar 30 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99625 * 2 1 4 4 H 1.48504 * 109.46853 * 270.00176 * 3 2 1 5 5 H 1.48498 * 109.47472 * 29.99967 * 3 2 1 6 6 H 1.48501 * 109.47327 * 150.00365 * 3 2 1 7 7 C 1.37872 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00488 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.64116 * 56.85963 * 9 7 2 11 11 C 1.55156 * 110.72292 * 293.52295 * 9 7 2 12 12 C 1.55124 * 101.48665 * 205.97076 * 11 9 7 13 13 N 1.47425 * 104.72614 * 37.29203 * 12 11 9 14 14 C 1.34775 * 125.65011 * 155.81839 * 13 12 11 15 15 O 1.21283 * 120.00134 * 179.69133 * 14 13 12 16 16 C 1.50699 * 119.99809 * 359.69432 * 14 13 12 17 17 C 1.53005 * 109.46899 * 180.02562 * 16 14 13 18 18 H 1.09002 * 115.55067 * 330.58136 * 17 16 14 19 19 C 1.53005 * 117.49765 * 116.25150 * 17 16 14 20 20 C 1.52999 * 117.51737 * 184.88171 * 17 16 14 21 21 H 1.09003 * 117.50034 * 0.02562 * 20 17 16 22 22 C 1.52994 * 117.50151 * 145.02748 * 20 17 16 23 23 C 1.53001 * 117.50053 * 248.74652 * 22 20 17 24 24 C 1.52999 * 117.50437 * 180.08708 * 22 20 17 25 25 C 1.47024 * 108.69971 * 335.55277 * 13 12 11 26 26 H 0.97004 * 120.00413 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.99972 * 324.20602 * 11 9 7 28 28 H 1.08990 * 111.00613 * 88.01963 * 11 9 7 29 29 H 1.09002 * 110.49251 * 278.44824 * 12 11 9 30 30 H 1.09002 * 110.34529 * 156.05613 * 12 11 9 31 31 H 1.08995 * 109.47597 * 60.00196 * 16 14 13 32 32 H 1.09005 * 109.47153 * 299.99574 * 16 14 13 33 33 H 1.09004 * 117.49360 * 215.00124 * 19 17 16 34 34 H 1.08995 * 117.49694 * 359.97438 * 19 17 16 35 35 H 1.09005 * 115.54866 * 34.41517 * 22 20 17 36 36 H 1.08996 * 117.49884 * 359.97438 * 23 22 20 37 37 H 1.09004 * 117.49586 * 145.01583 * 23 22 20 38 38 H 1.09003 * 117.49870 * 214.98583 * 24 22 20 39 39 H 1.09004 * 117.49603 * 359.97438 * 24 22 20 40 40 H 1.09005 * 109.87701 * 120.70301 * 25 13 12 41 41 H 1.08997 * 109.88576 * 241.71421 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.5757 -2.5537 -0.8521 11 6 0.4755 -2.6841 1.3327 12 6 0.3778 -4.2298 1.4210 13 7 1.6657 -4.7174 0.8949 14 6 2.2312 -5.9070 1.1805 15 8 3.2961 -6.2072 0.6837 16 6 1.5401 -6.8642 2.1171 17 6 2.3872 -8.1291 2.2700 18 1 3.0011 -8.3908 1.4081 19 6 2.9504 -8.4387 3.6586 20 6 1.8013 -9.2770 3.0946 21 1 0.8118 -9.1313 3.5281 22 6 2.1217 -10.7042 2.6464 23 6 0.9733 -11.5415 2.0798 24 6 1.5341 -11.8521 3.4698 25 6 2.2282 -3.6937 0.0020 26 1 -0.4851 0.8400 0.0004 27 1 1.0381 -2.2763 2.1725 28 1 -0.5152 -2.2339 1.2734 29 1 -0.4456 -4.5957 0.8076 30 1 0.2483 -4.5428 2.4571 31 1 0.5632 -7.1276 1.7119 32 1 1.4140 -6.3919 3.0914 33 1 3.9347 -8.9041 3.7101 34 1 2.7176 -7.7410 4.4630 35 1 3.1118 -10.8502 2.2143 36 1 -0.0107 -11.0756 2.0268 37 1 1.2079 -12.2385 1.2752 38 1 2.1375 -12.7533 3.5792 39 1 0.9195 -11.5904 4.3311 40 1 3.2031 -3.3750 0.3711 41 1 2.3269 -4.0951 -1.0065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712929045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:13 Heat of formation + Delta-G solvation = -1.081823 kcal Electronic energy + Delta-G solvation = -19345.721154 eV Core-core repulsion = 16419.426615 eV Total energy + Delta-G solvation = -2926.294539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63082 -38.49385 -36.75843 -35.52082 -33.04165 -30.74372 -29.12367 -28.20185 -24.87128 -23.75955 -22.63229 -22.38364 -20.95100 -20.21591 -19.66330 -18.57080 -16.90792 -16.39819 -15.69967 -15.60155 -15.29804 -14.60611 -14.43413 -13.84404 -13.72398 -13.23049 -12.60939 -12.57820 -12.21410 -12.01387 -11.81770 -11.64128 -11.34864 -11.31772 -11.24792 -11.14650 -11.01070 -10.82327 -10.77648 -10.49203 -9.87661 -9.82526 -9.56788 -9.50732 -9.21091 -8.99525 -8.49794 -7.97073 -6.12123 -4.15101 3.09541 3.26884 3.30770 3.33839 3.37716 3.60680 4.04417 4.31101 4.38201 4.65049 4.71006 4.86502 4.97025 5.09239 5.15613 5.20111 5.23380 5.42213 5.46652 5.59123 5.62909 5.66620 5.70729 5.78196 5.89884 5.90748 5.97639 5.98927 6.13364 6.25672 6.32903 6.36114 6.65934 6.84538 6.99144 7.10614 7.43435 7.68964 7.86915 8.17053 8.27704 8.67383 8.86949 9.49807 10.97906 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.051307 B = 0.003249 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.605018 B = 8615.201910 C = 8775.510689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.042 0.958 11 C -0.110 4.110 12 C 0.091 3.909 13 N -0.612 5.612 14 C 0.522 3.478 15 O -0.555 6.555 16 C -0.106 4.106 17 C -0.125 4.125 18 H 0.118 0.882 19 C -0.170 4.170 20 C -0.124 4.124 21 H 0.103 0.897 22 C -0.120 4.120 23 C -0.178 4.178 24 C -0.180 4.180 25 C 0.111 3.889 26 H 0.262 0.738 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.134 -17.450 7.250 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.060 0.940 11 C -0.149 4.149 12 C -0.031 4.031 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.435 6.435 16 C -0.145 4.145 17 C -0.144 4.144 18 H 0.136 0.864 19 C -0.206 4.206 20 C -0.142 4.142 21 H 0.121 0.879 22 C -0.138 4.138 23 C -0.215 4.215 24 C -0.217 4.217 25 C -0.011 4.011 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.696 -17.544 7.003 18.903 hybrid contribution 0.304 0.992 0.051 1.039 sum -0.392 -16.552 7.053 17.996 Atomic orbital electron populations 1.69942 1.05907 1.26778 1.50104 1.24955 0.94890 0.99160 0.94754 0.86559 0.79882 0.83184 0.78206 1.20592 1.21205 1.19838 1.21040 0.92932 0.89882 1.51417 0.92283 1.19719 0.92767 0.91076 0.93990 0.93958 1.22805 1.02332 0.89188 1.00574 1.22597 0.84954 0.98305 0.97292 1.48754 1.22461 1.16399 1.46835 1.20117 0.85346 0.81281 0.82247 1.90640 1.22631 1.75976 1.54215 1.21179 0.99407 0.93928 1.00020 1.22137 1.01898 0.94179 0.96166 0.86387 1.23101 0.97921 1.02751 0.96874 1.21855 0.98005 0.89961 1.04365 0.87887 1.21723 0.98013 0.90252 1.03826 1.22948 0.98528 1.03298 0.96761 1.22945 1.04250 0.99464 0.94996 1.22328 0.98885 0.88226 0.91660 0.92880 0.92161 0.90047 0.92236 0.92244 0.88913 0.89152 0.88784 0.88765 0.87815 0.88710 0.88871 0.88960 0.88821 0.92177 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 12.50 55.43 0.69 -23.67 16 2 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.66 8.47 -34.44 -0.29 -13.95 16 8 H 0.06 1.57 7.53 -52.48 -0.40 1.18 16 9 C 0.04 1.04 2.78 -89.94 -0.25 0.79 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.11 -2.34 5.96 -24.47 -0.15 -2.49 16 12 C 0.09 1.56 6.70 -2.41 -0.02 1.55 16 13 N -0.61 -11.75 3.32 -170.38 -0.57 -12.31 16 14 C 0.52 9.54 7.85 -10.99 -0.09 9.45 16 15 O -0.56 -12.01 15.89 5.55 0.09 -11.92 16 16 C -0.11 -1.40 4.98 -27.88 -0.14 -1.54 16 17 C -0.13 -1.58 5.13 -90.61 -0.47 -2.05 16 18 H 0.12 1.74 7.31 -51.93 -0.38 1.36 16 19 C -0.17 -1.84 9.90 -26.73 -0.26 -2.11 16 20 C -0.12 -1.26 5.57 -90.62 -0.50 -1.76 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C -0.12 -1.13 5.84 -90.62 -0.53 -1.66 16 23 C -0.18 -1.51 10.25 -26.70 -0.27 -1.78 16 24 C -0.18 -1.43 10.25 -26.70 -0.27 -1.70 16 25 C 0.11 2.43 6.45 -3.06 -0.02 2.41 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 28 H 0.08 1.81 7.77 -51.93 -0.40 1.41 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.40 7.63 -51.93 -0.40 1.00 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -29.06 337.33 -10.05 -39.12 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.98 Total: 1.17 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.36 Total: -13.21 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.13 Total: -35.98 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.06 -10.05 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712929045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.034 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds